Sat Mar 1 16:16:37 UTC 2025 I: starting to build libbio-featureio-perl/trixie/amd64 on jenkins on '2025-03-01 16:16'
Sat Mar 1 16:16:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/31665/console.log
Sat Mar 1 16:16:37 UTC 2025 I: Downloading source for trixie/libbio-featureio-perl=1.6.905-2
--2025-03-01 16:16:37-- http://deb.debian.org/debian/pool/main/libb/libbio-featureio-perl/libbio-featureio-perl_1.6.905-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2325 (2.3K) [text/prs.lines.tag]
Saving to: ‘libbio-featureio-perl_1.6.905-2.dsc’
0K .. 100% 383M=0s
2025-03-01 16:16:37 (383 MB/s) - ‘libbio-featureio-perl_1.6.905-2.dsc’ saved [2325/2325]
Sat Mar 1 16:16:37 UTC 2025 I: libbio-featureio-perl_1.6.905-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: libbio-featureio-perl
Binary: libbio-featureio-perl
Architecture: all
Version: 1.6.905-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <michael.crusoe@gmail.com>
Homepage: https://metacpan.org/release/Bio-FeatureIO
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/libbio-featureio-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-featureio-perl.git
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 12)
Build-Depends-Indep: libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl
Package-List:
libbio-featureio-perl deb perl optional arch=all
Checksums-Sha1:
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5cd2dcb01402b65d4303d5385f2d9954 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz
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Sat Mar 1 16:16:37 UTC 2025 I: Checking whether the package is not for us
Sat Mar 1 16:16:37 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net.
Sat Mar 1 16:16:37 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net.
Sat Mar 1 16:19:40 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sat Mar 1 04:16:42 -12 2025
I: pbuilder-time-stamp: 1740845802
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libbio-featureio-perl_1.6.905-2.dsc]
I: copying [./libbio-featureio-perl_1.6.905.orig.tar.gz]
I: copying [./libbio-featureio-perl_1.6.905-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./libbio-featureio-perl_1.6.905-2.dsc: unsupported subcommand
dpkg-source: info: extracting libbio-featureio-perl in libbio-featureio-perl-1.6.905
dpkg-source: info: unpacking libbio-featureio-perl_1.6.905.orig.tar.gz
dpkg-source: info: unpacking libbio-featureio-perl_1.6.905-2.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1737490/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='d3299379f5a4426fa6e44042d594f54a'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='1737490'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qe5NRsp5/pbuilderrc_yflX --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qe5NRsp5/b1 --logfile b1/build.log libbio-featureio-perl_1.6.905-2.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/1737490/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19802 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
Package libbio-perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
Package libtest-most-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtree-dagnode-perl; however:
Package libtree-dagnode-perl is not installed.
pbuilder-satisfydepends-dummy depends on liburi-perl; however:
Package liburi-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-dom-perl; however:
Package libxml-dom-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-dom-xpath-perl; however:
Package libxml-dom-xpath-perl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-slurp-tiny-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtree-dagnode-perl{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-dom-perl{a} libxml-dom-xpath-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-regexp-perl{a} libxml-xpathengine-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-libxml-perl libxml-libxslt-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget
0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded.
Need to get 27.7 MB of archives. After unpacking 97.9 MB will be used.
Writing extended state information...
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Get: 19 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
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Get: 23 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
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Get: 29 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB]
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Get: 34 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get: 36 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get: 39 http://deb.debian.org/debian trixie/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get: 40 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get: 41 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get: 42 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get: 44 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 libfile-slurp-tiny-perl all 0.004-2 [7592 B]
Get: 49 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB]
Get: 51 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 54 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 55 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
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Get: 58 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get: 59 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get: 61 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get: 62 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get: 63 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 64 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB]
Get: 65 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get: 66 http://deb.debian.org/debian trixie/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 67 http://deb.debian.org/debian trixie/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 68 http://deb.debian.org/debian trixie/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB]
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Get: 70 http://deb.debian.org/debian trixie/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB]
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Get: 72 http://deb.debian.org/debian trixie/main amd64 libtest-most-perl all 0.38-1 [25.1 kB]
Get: 73 http://deb.debian.org/debian trixie/main amd64 libtree-dagnode-perl all 1.32-1 [61.7 kB]
Get: 74 http://deb.debian.org/debian trixie/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB]
Get: 75 http://deb.debian.org/debian trixie/main amd64 libxml-perl all 0.08-4 [93.0 kB]
Get: 76 http://deb.debian.org/debian trixie/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B]
Get: 77 http://deb.debian.org/debian trixie/main amd64 libxml-dom-perl all 1.46-2 [152 kB]
Get: 78 http://deb.debian.org/debian trixie/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB]
Get: 79 http://deb.debian.org/debian trixie/main amd64 libxml-dom-xpath-perl all 0.14-4 [9352 B]
Fetched 27.7 MB in 5s (6141 kB/s)
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Reading package lists...
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-> Finished parsing the build-deps
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fakeroot is already the newest version (1.37-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/reproducible-path/libbio-featureio-perl-1.6.905/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-featureio-perl_1.6.905-2_source.changes
dpkg-buildpackage: info: source package libbio-featureio-perl
dpkg-buildpackage: info: source version 1.6.905-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-featureio-perl-1.6.905=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-featureio-perl-1.6.905=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::FeatureIO
Writing MYMETA.yml and MYMETA.json
dh_auto_build
make -j20
make[1]: Entering directory '/build/reproducible-path/libbio-featureio-perl-1.6.905'
cp lib/Bio/FeatureIO.pm blib/lib/Bio/FeatureIO.pm
cp lib/Bio/FeatureIO/bed.pm blib/lib/Bio/FeatureIO/bed.pm
cp lib/Bio/FeatureIO/interpro.pm blib/lib/Bio/FeatureIO/interpro.pm
cp lib/Bio/FeatureIO/ptt.pm blib/lib/Bio/FeatureIO/ptt.pm
cp lib/Bio/FeatureIO/vecscreen_simple.pm blib/lib/Bio/FeatureIO/vecscreen_simple.pm
cp lib/Bio/FeatureIO/gff.pm blib/lib/Bio/FeatureIO/gff.pm
cp lib/Bio/SeqFeature/Annotated.pm blib/lib/Bio/SeqFeature/Annotated.pm
cp lib/Bio/FeatureIO/gtf.pm blib/lib/Bio/FeatureIO/gtf.pm
Manifying 8 pod documents
make[1]: Leaving directory '/build/reproducible-path/libbio-featureio-perl-1.6.905'
dh_auto_test
make -j20 test TEST_VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/libbio-featureio-perl-1.6.905'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/release-SeqFeature/*.t
t/00-compile.t ....................
1..8
ok 1 - Bio/FeatureIO.pm loaded ok
ok 2 - Bio/FeatureIO/bed.pm loaded ok
ok 3 - Bio/FeatureIO/gff.pm loaded ok
ok 4 - Bio/FeatureIO/gtf.pm loaded ok
ok 5 - Bio/FeatureIO/interpro.pm loaded ok
ok 6 - Bio/FeatureIO/ptt.pm loaded ok
ok 7 - Bio/FeatureIO/vecscreen_simple.pm loaded ok
ok 8 - Bio/SeqFeature/Annotated.pm loaded ok
ok
t/bed.t ...........................
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
1..7
ok
t/FeatureIO.t .....................
ok 1 - use Bio::FeatureIO;
ok 2 - use Bio::FeatureIO::gff;
ok 3 - use Bio::FeatureIO::ptt;
ok 4 - use Bio::FeatureIO::vecscreen_simple;
ok 5 - use Bio::SeqFeature::Annotated;
1..5
ok
t/gff.t ...........................
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7 - An object of class 'Bio::SeqFeature::Annotated' isa 'Bio::SeqFeatureI'
ok 8 - An object of class 'Bio::SeqFeature::Annotated' isa 'Bio::SeqFeature::Annotated'
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101
ok 102
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108
ok 109
ok 110
ok 111
ok 112
ok 113
ok 114
ok 115
ok 116
ok 117
ok 118
ok 119
ok 120
ok 121
not ok 122 # TODO Add clustering groups based on grouping within the file
# Failed (TODO) test at t/gff.t line 366.
1..122
ok
t/ptt.t ...........................
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11 - ptt file
1..11
ok
t/release-mojibake.t .............. skipped: these tests are for release candidate testing
t/release-pod-coverage.t .......... skipped: these tests are for release candidate testing
t/release-pod-syntax.t ............ skipped: these tests are for release candidate testing
t/release-SeqFeature/Annotated.t .. skipped: these tests are for release candidate testing
t/vecscreen.t .....................
ok 1
ok 2 - vecscreen_simple gets the correct features
1..2
ok
All tests successful.
Files=10, Tests=155, 5 wallclock secs ( 0.08 usr 0.01 sys + 2.58 cusr 0.46 csys = 3.13 CPU)
Result: PASS
make[1]: Leaving directory '/build/reproducible-path/libbio-featureio-perl-1.6.905'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-featureio-perl/
make -j20 install DESTDIR=/build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/reproducible-path/libbio-featureio-perl-1.6.905'
Manifying 8 pod documents
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO.pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/SeqFeature/Annotated.pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/gtf.pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/ptt.pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/interpro.pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/bed.pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/vecscreen_simple.pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/gff.pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::ptt.3pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::vecscreen_simple.3pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO.3pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::SeqFeature::Annotated.3pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::gtf.3pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::gff.3pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::interpro.3pm
Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::bed.3pm
make[1]: Leaving directory '/build/reproducible-path/libbio-featureio-perl-1.6.905'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-featureio-perl' in '../libbio-featureio-perl_1.6.905-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../libbio-featureio-perl_1.6.905-2_amd64.buildinfo
dpkg-genchanges --build=binary -O../libbio-featureio-perl_1.6.905-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1737490 and its subdirectories
I: Current time: Sat Mar 1 04:19:40 -12 2025
I: pbuilder-time-stamp: 1740845980
Sat Mar 1 16:19:41 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Sat Mar 1 16:19:41 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Sat Mar 1 16:21:42 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Sat Mar 1 16:21:42 UTC 2025 I: libbio-featureio-perl_1.6.905-2_amd64.changes:
Format: 1.8
Date: Mon, 13 Jan 2020 09:01:02 +0100
Source: libbio-featureio-perl
Binary: libbio-featureio-perl
Architecture: all
Version: 1.6.905-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libbio-featureio-perl - Modules for reading, writing, and manipulating sequence features
Changes:
libbio-featureio-perl (1.6.905-2) unstable; urgency=medium
.
* Team upload
* Source-only upload to allow testing migration
Checksums-Sha1:
b4c15279611d9eaf373fe45d405be3f95af085d5 51004 libbio-featureio-perl_1.6.905-2_all.deb
86c26f376f89a1c998ebcdf4f6e39bcf799385e6 6273 libbio-featureio-perl_1.6.905-2_amd64.buildinfo
Checksums-Sha256:
6e940a5f9b00030481ce9df0485a676dd99170a66ad97c25580879cfc52e4bc3 51004 libbio-featureio-perl_1.6.905-2_all.deb
3b4165ea3ffda0dd28cb4a8419c99fd85f4de4c8002905e416237fc75410a84a 6273 libbio-featureio-perl_1.6.905-2_amd64.buildinfo
Files:
f533dd2a6a621066ed85ca3431a9866f 51004 perl optional libbio-featureio-perl_1.6.905-2_all.deb
0254692e57474807960e08ceceeebb38 6273 science optional libbio-featureio-perl_1.6.905-2_amd64.buildinfo
Sat Mar 1 16:21:43 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_17-31665.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Qe5NRsp5/libbio-featureio-perl_1.6.905-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Qe5NRsp5/libbio-featureio-perl_1.6.905-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Qe5NRsp5/libbio-featureio-perl_1.6.905-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Qe5NRsp5/b1/libbio-featureio-perl_1.6.905-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Qe5NRsp5/b2/libbio-featureio-perl_1.6.905-2_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 224ms
CPU time consumed: 224ms
Sat Mar 1 16:21:44 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Sat Mar 1 16:21:44 UTC 2025 I: libbio-featureio-perl from trixie built successfully and reproducibly on amd64.
Sat Mar 1 16:21:45 UTC 2025 I: Submitting .buildinfo files to external archives:
Sat Mar 1 16:21:45 UTC 2025 I: Submitting 8.0K b1/libbio-featureio-perl_1.6.905-2_amd64.buildinfo.asc
Sat Mar 1 16:21:47 UTC 2025 I: Submitting 8.0K b2/libbio-featureio-perl_1.6.905-2_amd64.buildinfo.asc
Sat Mar 1 16:21:48 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Mar 1 16:21:48 UTC 2025 I: Done submitting .buildinfo files.
Sat Mar 1 16:21:48 UTC 2025 I: Removing signed libbio-featureio-perl_1.6.905-2_amd64.buildinfo.asc files:
removed './b1/libbio-featureio-perl_1.6.905-2_amd64.buildinfo.asc'
removed './b2/libbio-featureio-perl_1.6.905-2_amd64.buildinfo.asc'