Mon Aug 4 14:07:25 UTC 2025 I: starting to build libbioparser-dev/trixie/amd64 on jenkins on '2025-08-04 14:07' Mon Aug 4 14:07:25 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/53604/console.log Mon Aug 4 14:07:25 UTC 2025 I: Downloading source for trixie/libbioparser-dev=3.1.0-2 --2025-08-04 14:07:25-- http://deb.debian.org/debian/pool/main/libb/libbioparser-dev/libbioparser-dev_3.1.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1488 (1.5K) [text/prs.lines.tag] Saving to: ‘libbioparser-dev_3.1.0-2.dsc’ 0K . 100% 180M=0s 2025-08-04 14:07:25 (180 MB/s) - ‘libbioparser-dev_3.1.0-2.dsc’ saved [1488/1488] Mon Aug 4 14:07:25 UTC 2025 I: libbioparser-dev_3.1.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbioparser-dev Binary: libbioparser-dev Architecture: all Version: 3.1.0-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvaser/bioparser/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbioparser-dev Vcs-Git: https://salsa.debian.org/med-team/libbioparser-dev.git Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev, libbiosoup-dev (>= 0.11.0-3~) Package-List: libbioparser-dev deb libdevel optional arch=all Checksums-Sha1: 061efd61294089b4b82dc90d72c2fb015e794e7d 1016738 libbioparser-dev_3.1.0.orig.tar.gz a1676f251d1d4d9d230b490e3abccec56a6f03ba 3488 libbioparser-dev_3.1.0-2.debian.tar.xz Checksums-Sha256: ddb48cb456c72cf2955adf056c9204caf65483ec0a5bbba47389bc30ed9fdd05 1016738 libbioparser-dev_3.1.0.orig.tar.gz 2e8ff1d2a4bc79c333e665df30b5a67fca261f7c95e9b7225af3112105b0b74b 3488 libbioparser-dev_3.1.0-2.debian.tar.xz Files: 0d69f4d3e6209c8a818ecb21f5deca89 1016738 libbioparser-dev_3.1.0.orig.tar.gz 724761db6d36c9b3aa33483b73349de6 3488 libbioparser-dev_3.1.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIgEARYKADAWIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCaBeKfBIcbmlsZXNoQGRl Ymlhbi5vcmcACgkQKieQS9ckPtrhQgEAs7aL1EKKITUf2VV7YdfxcJW2CPIqgGAt 6ZBN61lFbcMBAPpjmgEXyWU5opTFuxIo7lvzPxefq6DQEzR5El1FNFMB =gaJ2 -----END PGP SIGNATURE----- Mon Aug 4 14:07:25 UTC 2025 I: Checking whether the package is not for us Mon Aug 4 14:07:25 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Aug 4 14:07:25 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Aug 4 14:08:47 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 6 08:30:26 -12 2026 I: pbuilder-time-stamp: 1788726626 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbioparser-dev_3.1.0-2.dsc] I: copying [./libbioparser-dev_3.1.0.orig.tar.gz] I: copying [./libbioparser-dev_3.1.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbioparser-dev_3.1.0-2.dsc: no acceptable signature found dpkg-source: info: extracting libbioparser-dev in libbioparser-dev-3.1.0 dpkg-source: info: unpacking libbioparser-dev_3.1.0.orig.tar.gz dpkg-source: info: unpacking libbioparser-dev_3.1.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying disable-test-on-32-bit.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3929760/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='dc0bbc02c6e747e8b9edda8cb0dee0b5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3929760' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eGaJjrsI/pbuilderrc_m1Xi --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eGaJjrsI/b1 --logfile b1/build.log libbioparser-dev_3.1.0-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3929760/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev, libbiosoup-dev (>= 0.11.0-3~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbiosoup-dev (>= 0.11.0-3~); however: Package libbiosoup-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbiosoup-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After unpacking 120 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 googletest all 1.16.0-1 [517 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-3 [7972 B] Get: 62 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 33.1 MB in 6s (5328 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbioparser-dev-3.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbioparser-dev_3.1.0-2_source.changes dpkg-buildpackage: info: source package libbioparser-dev dpkg-buildpackage: info: source version 3.1.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_auto_configure -- -Dbioparser_build_tests=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dbioparser_build_tests=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.8") -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: 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-MD -MT CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/mhap_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/paf_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/sam_parser_test.cpp [100%] Linking CXX executable bin/bioparser_test /usr/bin/cmake -E cmake_link_script CMakeFiles/bioparser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/bioparser_test.dir/link.d CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -o bin/bioparser_test /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' [100%] Built target bioparser_test make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' set -e -x; for f in obj-*/bin/*_test; do [ ! -x $f ] || $f; done + [ ! -x obj-x86_64-linux-gnu/bin/bioparser_test ] + obj-x86_64-linux-gnu/bin/bioparser_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 35 tests from 6 test suites. [----------] Global test environment set-up. [----------] 1 test from BioparserParserTest [ RUN ] BioparserParserTest.Create [ OK ] BioparserParserTest.Create (0 ms) [----------] 1 test from BioparserParserTest (0 ms total) [----------] 10 tests from BioparserFastaTest [ RUN ] BioparserFastaTest.ParseWhole [ OK ] BioparserFastaTest.ParseWhole (3 ms) [ RUN ] BioparserFastaTest.ParseWholeWithoutTrimming [ OK ] BioparserFastaTest.ParseWholeWithoutTrimming (2 ms) [ RUN ] BioparserFastaTest.ParseInChunks [ OK ] BioparserFastaTest.ParseInChunks (0 ms) [ RUN ] BioparserFastaTest.FormatError [ OK ] BioparserFastaTest.FormatError (1 ms) [ RUN ] BioparserFastaTest.ParseAndReset [ OK ] BioparserFastaTest.ParseAndReset (0 ms) [ RUN ] BioparserFastaTest.CompressedParseWhole [ OK ] BioparserFastaTest.CompressedParseWhole (1 ms) [ RUN ] BioparserFastaTest.CompressedParseWholeWithoutTrimming [ OK ] BioparserFastaTest.CompressedParseWholeWithoutTrimming (0 ms) [ RUN ] BioparserFastaTest.CompressedParseInChunks [ OK ] BioparserFastaTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserFastaTest.CompressedParseAndReset [ OK ] BioparserFastaTest.CompressedParseAndReset (1 ms) [ RUN ] BioparserFastaTest.CompressedFormatError [ OK ] BioparserFastaTest.CompressedFormatError (2 ms) [----------] 10 tests from BioparserFastaTest (15 ms total) [----------] 6 tests from BioparserFastqTest [ RUN ] BioparserFastqTest.ParseWhole [ OK ] BioparserFastqTest.ParseWhole (0 ms) [ RUN ] BioparserFastqTest.ParseInChunks [ OK ] BioparserFastqTest.ParseInChunks (0 ms) [ RUN ] BioparserFastqTest.FormatError [ OK ] BioparserFastqTest.FormatError (0 ms) [ RUN ] BioparserFastqTest.CompressedParseWhole [ OK ] BioparserFastqTest.CompressedParseWhole (1 ms) [ RUN ] BioparserFastqTest.CompressedParseInChunks [ OK ] BioparserFastqTest.CompressedParseInChunks (1 ms) [ RUN ] BioparserFastqTest.CompressedFormatError [ OK ] BioparserFastqTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserFastqTest (5 ms total) [----------] 6 tests from BioparserMhapTest [ RUN ] BioparserMhapTest.ParseWhole [ OK ] BioparserMhapTest.ParseWhole (0 ms) [ RUN ] BioparserMhapTest.ParseInChunks [ OK ] BioparserMhapTest.ParseInChunks (0 ms) [ RUN ] BioparserMhapTest.FormatError [ OK ] BioparserMhapTest.FormatError (0 ms) [ RUN ] BioparserMhapTest.CompressedParseWhole [ OK ] BioparserMhapTest.CompressedParseWhole (0 ms) [ RUN ] BioparserMhapTest.CompressedParseInChunks [ OK ] BioparserMhapTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserMhapTest.CompressedFormatError [ OK ] BioparserMhapTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserMhapTest (2 ms total) [----------] 6 tests from BioparserPafTest [ RUN ] BioparserPafTest.ParseWhole [ OK ] BioparserPafTest.ParseWhole (0 ms) [ RUN ] BioparserPafTest.ParseInChunks [ OK ] BioparserPafTest.ParseInChunks (0 ms) [ RUN ] BioparserPafTest.FormatError [ OK ] BioparserPafTest.FormatError (0 ms) [ RUN ] BioparserPafTest.CompressedParseWhole [ OK ] BioparserPafTest.CompressedParseWhole (0 ms) [ RUN ] BioparserPafTest.CompressedParseInChunks [ OK ] BioparserPafTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserPafTest.CompressedFormatError [ OK ] BioparserPafTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserPafTest (3 ms total) [----------] 6 tests from BioparserSamTest [ RUN ] BioparserSamTest.ParseWhole [ OK ] BioparserSamTest.ParseWhole (2 ms) [ RUN ] BioparserSamTest.ParseInChunks [ OK ] BioparserSamTest.ParseInChunks (1 ms) [ RUN ] BioparserSamTest.FormatError [ OK ] BioparserSamTest.FormatError (0 ms) [ RUN ] BioparserSamTest.CompressedParseWhole [ OK ] BioparserSamTest.CompressedParseWhole (5 ms) [ RUN ] BioparserSamTest.CompressedParseInChunks [ OK ] BioparserSamTest.CompressedParseInChunks (5 ms) [ RUN ] BioparserSamTest.CompressedFormatError [ OK ] BioparserSamTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserSamTest (15 ms total) [----------] Global test environment tear-down [==========] 35 tests from 6 test suites ran. (43 ms total) [ PASSED ] 35 tests. make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbioparser-dev/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fastq_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/sam_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/mhap_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/paf_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fasta_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserTargets.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfig.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfigVersion.cmake make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' dh_install debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' mv debian/`dh_listpackages`/usr/lib/*/cmake debian/`dh_listpackages`/usr/share rm -rf debian/`dh_listpackages`/usr/lib find debian -name meson.build -delete make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbioparser-dev' in '../libbioparser-dev_3.1.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../libbioparser-dev_3.1.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../libbioparser-dev_3.1.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3929760 and its subdirectories I: Current time: Sun Sep 6 08:31:47 -12 2026 I: pbuilder-time-stamp: 1788726707 Mon Aug 4 14:08:48 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Aug 4 14:08:48 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Aug 4 14:09:50 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Aug 4 14:09:50 UTC 2025 I: libbioparser-dev_3.1.0-2_amd64.changes: Format: 1.8 Date: Sun, 04 May 2025 20:53:43 +0530 Source: libbioparser-dev Binary: libbioparser-dev Architecture: all Version: 3.1.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: libbioparser-dev - library for parsing several formats in bioinformatics Changes: libbioparser-dev (3.1.0-2) unstable; urgency=medium . * Team Upload. * Disable a test on 32 bit arch * Tighten B-D on libbiosoup-dev Checksums-Sha1: 5458b695d234f34c04489c32284caf1e8995e058 9208 libbioparser-dev_3.1.0-2_all.deb 1ed717988684ae6e206294b2e62de29ffda51bea 5764 libbioparser-dev_3.1.0-2_amd64.buildinfo Checksums-Sha256: 2952c6d07b4d1dfaaffedb694941d78571d0298e471b82b29c290d944e34c9cc 9208 libbioparser-dev_3.1.0-2_all.deb b5ee7b4de8cf09c35e7f8cf0c15224b0206221218c94e2e1f56ef1433b50d6f8 5764 libbioparser-dev_3.1.0-2_amd64.buildinfo Files: b95d4fc373298385dcb0ea65702bdd26 9208 libdevel optional libbioparser-dev_3.1.0-2_all.deb 7c5d481f50552a542d32c153906cc66a 5764 science optional libbioparser-dev_3.1.0-2_amd64.buildinfo Mon Aug 4 14:09:51 UTC 2025 I: diffoscope 303 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_30-53604.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eGaJjrsI/libbioparser-dev_3.1.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eGaJjrsI/libbioparser-dev_3.1.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eGaJjrsI/libbioparser-dev_3.1.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eGaJjrsI/b1/libbioparser-dev_3.1.0-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eGaJjrsI/b2/libbioparser-dev_3.1.0-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 175ms CPU time consumed: 177ms Mon Aug 4 14:09:51 UTC 2025 I: diffoscope 303 found no differences in the changes files, and a .buildinfo file also exists. Mon Aug 4 14:09:51 UTC 2025 I: libbioparser-dev from trixie built successfully and reproducibly on amd64. Mon Aug 4 14:09:52 UTC 2025 I: Removing signed libbioparser-dev_3.1.0-2_amd64.buildinfo.asc files: removed './b1/libbioparser-dev_3.1.0-2_amd64.buildinfo.asc' removed './b2/libbioparser-dev_3.1.0-2_amd64.buildinfo.asc'