Wed Mar 5 03:41:04 UTC 2025 I: starting to build librostlab-blast/trixie/amd64 on jenkins on '2025-03-05 03:40'
Wed Mar 5 03:41:04 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/31848/console.log
Wed Mar 5 03:41:04 UTC 2025 I: Downloading source for trixie/librostlab-blast=1.0.1-14
--2025-03-05 03:41:04-- http://deb.debian.org/debian/pool/main/libr/librostlab-blast/librostlab-blast_1.0.1-14.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2562 (2.5K) [text/prs.lines.tag]
Saving to: ‘librostlab-blast_1.0.1-14.dsc’
0K .. 100% 260M=0s
2025-03-05 03:41:04 (260 MB/s) - ‘librostlab-blast_1.0.1-14.dsc’ saved [2562/2562]
Wed Mar 5 03:41:04 UTC 2025 I: librostlab-blast_1.0.1-14.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: librostlab-blast
Binary: librostlab-blast0v5, librostlab-blast0-dev, librostlab-blast-doc
Architecture: any all
Version: 1.0.1-14
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Laszlo Kajan <lkajan@rostlab.org>, Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://rostlab.org/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/librostlab-blast
Vcs-Git: https://salsa.debian.org/med-team/librostlab-blast.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential
Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
Package-List:
librostlab-blast-doc deb doc optional arch=all
librostlab-blast0-dev deb libdevel optional arch=any
librostlab-blast0v5 deb libs optional arch=any
Checksums-Sha1:
5b5cff416807dae2daad3d17540c7fa70bb8bc70 384023 librostlab-blast_1.0.1.orig.tar.gz
472b4689777775ba4118c98a661c1430dff10b6c 6716 librostlab-blast_1.0.1-14.debian.tar.xz
Checksums-Sha256:
7c0a0181253b3006585b7ffb755fb9720181e70d91dd25ec511b5d88bd6ece45 384023 librostlab-blast_1.0.1.orig.tar.gz
c0f2a42b8ecb4688421380e08af81b7357371dba08d57bd905dd33d9083ba826 6716 librostlab-blast_1.0.1-14.debian.tar.xz
Files:
da93e9eed00ac33083748462b50f673f 384023 librostlab-blast_1.0.1.orig.tar.gz
e07c742b448c20ef84090ccf49a9925f 6716 librostlab-blast_1.0.1-14.debian.tar.xz
Dgit: 66db23788cc22202dea379ffb608422472358f3d debian archive/debian/1.0.1-14 https://git.dgit.debian.org/librostlab-blast
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Wed Mar 5 03:41:04 UTC 2025 I: Checking whether the package is not for us
Wed Mar 5 03:41:04 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net.
Wed Mar 5 03:41:04 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net.
Wed Mar 5 03:51:20 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Mar 4 15:41:07 -12 2025
I: pbuilder-time-stamp: 1741146067
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [librostlab-blast_1.0.1-14.dsc]
I: copying [./librostlab-blast_1.0.1.orig.tar.gz]
I: copying [./librostlab-blast_1.0.1-14.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./librostlab-blast_1.0.1-14.dsc: unsupported subcommand
dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.1
dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz
dpkg-source: info: unpacking librostlab-blast_1.0.1-14.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying modernize_c++.patch
dpkg-source: info: applying gcc-12.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/575315/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='ba24fc5b5c3f4e199f55368117a38c50'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='575315'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D60W75Pq/pbuilderrc_Ii0q --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D60W75Pq/b1 --logfile b1/build.log librostlab-blast_1.0.1-14.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/575315/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19802 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs; however:
Package d-shlibs is not installed.
pbuilder-satisfydepends-dummy depends on bison; however:
Package bison is not installed.
pbuilder-satisfydepends-dummy depends on doxygen; however:
Package doxygen is not installed.
pbuilder-satisfydepends-dummy depends on flex; however:
Package flex is not installed.
pbuilder-satisfydepends-dummy depends on graphviz; however:
Package graphviz is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
Package texlive-latex-recommended is not installed.
pbuilder-satisfydepends-dummy depends on librostlab-dev; however:
Package librostlab-dev is not installed.
pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
Package texlive-fonts-recommended is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
Package texlive-latex-extra is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libavif16{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp19{a} libclang1-19{a} libcommons-logging-java{a} libcommons-parent-java{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0t64{a} libgraphite2-3{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libkpathsea6{a} liblab-gamut1{a} liblerc4{a} libllvm19{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpathplan4{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} librostlab3-dev{a} librostlab3t64{a} libsharpyuv0{a} libsm6{a} libsvtav1enc2{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} libz3-4{a} libzzip-0-13t64{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl default-jre dvisvgm fonts-liberation libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lmodern lynx psmisc ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 157 newly installed, 0 to remove and 0 not upgraded.
Need to get 211 MB of archives. After unpacking 802 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 flex amd64 2.6.4-8.2+b4 [423 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-1 [27.1 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 media-types all 12.0.0 [28.9 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get: 14 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-1 [10.0 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-1 [28.1 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 22 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB]
Get: 27 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get: 30 http://deb.debian.org/debian trixie/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get: 31 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0050 [42.7 kB]
Get: 32 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 33 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 34 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 36 http://deb.debian.org/debian trixie/main amd64 bison amd64 2:3.8.2+dfsg-1+b2 [1170 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.109 [11.1 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 39 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 40 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 41 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 42 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 44 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB]
Get: 49 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 51 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB]
Get: 54 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB]
Get: 55 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB]
Get: 56 http://deb.debian.org/debian trixie/main amd64 libclang-cpp19 amd64 1:19.1.7-1+b1 [13.2 MB]
Get: 57 http://deb.debian.org/debian trixie/main amd64 libclang1-19 amd64 1:19.1.7-1+b1 [7614 kB]
Get: 58 http://deb.debian.org/debian trixie/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB]
Get: 59 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get: 61 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.47-1 [282 kB]
Get: 62 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 63 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 64 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 65 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB]
Get: 66 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB]
Get: 67 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2 [463 kB]
Get: 68 http://deb.debian.org/debian trixie/main amd64 fonts-lmodern all 2.005-1 [4540 kB]
Get: 69 http://deb.debian.org/debian trixie/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB]
Get: 70 http://deb.debian.org/debian trixie/main amd64 libcdt5 amd64 2.42.4-2+b4 [40.5 kB]
Get: 71 http://deb.debian.org/debian trixie/main amd64 libcgraph6 amd64 2.42.4-2+b4 [64.2 kB]
Get: 72 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.12.0-1 [1870 kB]
Get: 73 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB]
Get: 74 http://deb.debian.org/debian trixie/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB]
Get: 75 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.19.0-3 [350 kB]
Get: 76 http://deb.debian.org/debian trixie/main amd64 librav1e0.7 amd64 0.7.1-9+b1 [946 kB]
Get: 77 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB]
Get: 78 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB]
Get: 79 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [174 kB]
Get: 80 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.1.1-1 [117 kB]
Get: 81 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get: 82 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.19.5-1+b1 [11.5 kB]
Get: 83 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b3 [189 kB]
Get: 84 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.19.5-1+b1 [15.5 kB]
Get: 85 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.19.5-1+b1 [514 kB]
Get: 86 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB]
Get: 87 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 88 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.83.4-1 [1512 kB]
Get: 89 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 90 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB]
Get: 91 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB]
Get: 92 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get: 93 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 94 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 95 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get: 96 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get: 97 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 98 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 99 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 100 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 101 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 102 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB]
Get: 103 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB]
Get: 104 http://deb.debian.org/debian trixie/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB]
Get: 105 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 106 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 107 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 108 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 109 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB]
Get: 110 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get: 111 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-3 [415 kB]
Get: 112 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get: 113 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get: 114 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get: 115 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB]
Get: 116 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB]
Get: 117 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB]
Get: 118 http://deb.debian.org/debian trixie/main amd64 libpathplan4 amd64 2.42.4-2+b4 [42.8 kB]
Get: 119 http://deb.debian.org/debian trixie/main amd64 libgvc6 amd64 2.42.4-2+b4 [685 kB]
Get: 120 http://deb.debian.org/debian trixie/main amd64 libgvpr2 amd64 2.42.4-2+b4 [193 kB]
Get: 121 http://deb.debian.org/debian trixie/main amd64 liblab-gamut1 amd64 2.42.4-2+b4 [198 kB]
Get: 122 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB]
Get: 123 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get: 124 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB]
Get: 125 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get: 126 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB]
Get: 127 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB]
Get: 128 http://deb.debian.org/debian trixie/main amd64 graphviz amd64 2.42.4-2+b4 [619 kB]
Get: 129 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 33-2 [5852 B]
Get: 130 http://deb.debian.org/debian trixie/main amd64 libcommons-parent-java all 56-1 [10.8 kB]
Get: 131 http://deb.debian.org/debian trixie/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB]
Get: 132 http://deb.debian.org/debian trixie/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB]
Get: 133 http://deb.debian.org/debian trixie/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5+b1 [157 kB]
Get: 134 http://deb.debian.org/debian trixie/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB]
Get: 135 http://deb.debian.org/debian trixie/main amd64 libpaper2 amd64 2.2.5-0.3+b1 [16.6 kB]
Get: 136 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 2.2.5-0.3+b1 [16.4 kB]
Get: 137 http://deb.debian.org/debian trixie/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB]
Get: 138 http://deb.debian.org/debian trixie/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB]
Get: 139 http://deb.debian.org/debian trixie/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5+b1 [49.4 kB]
Get: 140 http://deb.debian.org/debian trixie/main amd64 librostlab3t64 amd64 1.0.20-14 [5076 B]
Get: 141 http://deb.debian.org/debian trixie/main amd64 librostlab3-dev amd64 1.0.20-14 [12.6 kB]
Get: 142 http://deb.debian.org/debian trixie/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5+b1 [63.0 kB]
Get: 143 http://deb.debian.org/debian trixie/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB]
Get: 144 http://deb.debian.org/debian trixie/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5+b1 [115 kB]
Get: 145 http://deb.debian.org/debian trixie/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB]
Get: 146 http://deb.debian.org/debian trixie/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [59.0 kB]
Get: 147 http://deb.debian.org/debian trixie/main amd64 tex-common all 6.18 [32.5 kB]
Get: 148 http://deb.debian.org/debian trixie/main amd64 preview-latex-style all 13.2-1 [350 kB]
Get: 149 http://deb.debian.org/debian trixie/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get: 150 http://deb.debian.org/debian trixie/main amd64 texlive-binaries amd64 2024.20240313.70630+ds-5+b1 [8504 kB]
Get: 151 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 152 http://deb.debian.org/debian trixie/main amd64 texlive-base all 2024.20250114-1 [22.8 MB]
Get: 153 http://deb.debian.org/debian trixie/main amd64 texlive-fonts-recommended all 2024.20250114-1 [4991 kB]
Get: 154 http://deb.debian.org/debian trixie/main amd64 texlive-latex-base all 2024.20250114-1 [1282 kB]
Get: 155 http://deb.debian.org/debian trixie/main amd64 texlive-latex-recommended all 2024.20250114-1 [8760 kB]
Get: 156 http://deb.debian.org/debian trixie/main amd64 texlive-pictures all 2024.20250114-1 [17.1 MB]
Get: 157 http://deb.debian.org/debian trixie/main amd64 texlive-latex-extra all 2024.20250114-1 [24.7 MB]
Fetched 211 MB in 32s (6544 kB/s)
Preconfiguring packages ...
Selecting previously unselected package m4.
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Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package flex.
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Unpacking flex (2.6.4-8.2+b4) ...
Selecting previously unselected package libpython3.13-minimal:amd64.
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Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ...
Selecting previously unselected package libexpat1:amd64.
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Unpacking libexpat1:amd64 (2.6.4-1) ...
Selecting previously unselected package python3.13-minimal.
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Unpacking python3.13-minimal (3.13.2-1) ...
Setting up libpython3.13-minimal:amd64 (3.13.2-1) ...
Setting up libexpat1:amd64 (2.6.4-1) ...
Setting up python3.13-minimal (3.13.2-1) ...
Selecting previously unselected package python3-minimal.
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Unpacking python3-minimal (3.13.2-1) ...
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Unpacking media-types (12.0.0) ...
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Unpacking netbase (6.4) ...
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Unpacking tzdata (2025a-2) ...
Selecting previously unselected package libffi8:amd64.
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Unpacking libffi8:amd64 (3.4.7-1) ...
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Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:amd64.
Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:amd64 (8.2-6) ...
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Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ...
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Unpacking python3.13 (3.13.2-1) ...
Selecting previously unselected package libpython3-stdlib:amd64.
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Setting up python3-minimal (3.13.2-1) ...
Selecting previously unselected package python3.
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Preparing to unpack .../000-python3_3.13.2-1_amd64.deb ...
Unpacking python3 (3.13.2-1) ...
Selecting previously unselected package libproc2-0:amd64.
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Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
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Unpacking procps (2:4.0.4-7) ...
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Unpacking file (1:5.45-3+b1) ...
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Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:amd64.
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Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
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Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
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Unpacking bsdextrautils (2.40.4-5) ...
Selecting previously unselected package libpipeline1:amd64.
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Moving old data out of the way
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Unpacking bison (2:3.8.2+dfsg-1+b2) ...
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Unpacking libdebhelper-perl (13.24.1) ...
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Unpacking libtool (2.5.4-3) ...
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Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
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Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
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Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
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Unpacking dh-strip-nondeterminism (1.14.1-2) ...
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Unpacking libelf1t64:amd64 (0.192-4) ...
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Unpacking dwz (0.15-1+b1) ...
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Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Selecting previously unselected package gettext.
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/librostlab-blast-1.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librostlab-blast_1.0.1-14_source.changes
dpkg-buildpackage: info: source package librostlab-blast
dpkg-buildpackage: info: source version 1.0.1-14
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_auto_clean
rm -f lib/librostlab-blast.tag
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:9: warning: The macro 'AC_PROG_LIBTOOL' is obsolete.
configure.ac:9: You should run autoupdate.
m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:11: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete
./lib/autoconf/programs.m4:743: _AC_PROG_LEX is expanded from...
./lib/autoconf/programs.m4:736: AC_PROG_LEX is expanded from...
configure.ac:11: the top level
configure.ac:7: installing './compile'
configure.ac:5: installing './missing'
lib/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf=No
./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf=No
checking for a BSD-compatible install... /usr/bin/install -c
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checking whether the compiler supports GNU C++... yes
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checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
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checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
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checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
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checking for lex output file root... lex.yy
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
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config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_auto_build
make -j20
make[2]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
make all-recursive
make[3]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
Making all in lib
make[4]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
mkdir -p rostlab
/bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex
/bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:1.1-9: warning: POSIX Yacc does not support %skeleton [-Wyacc]
1 | %skeleton "lalr1.cc"
| ^~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:1.11-20: warning: POSIX Yacc does not support string literals [-Wyacc]
1 | %skeleton "lalr1.cc"
| ^~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:20.1-8: warning: POSIX Yacc does not support %require [-Wyacc]
20 | %require "2.4.1"
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:20.10-16: warning: POSIX Yacc does not support string literals [-Wyacc]
20 | %require "2.4.1"
| ^~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:21.1-8: warning: POSIX Yacc does not support %defines [-Wyacc]
21 | %defines
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.1-7: warning: POSIX Yacc does not support %define [-Wyacc]
22 | %define namespace "rostlab::blast"
| ^~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.19-34: warning: POSIX Yacc does not support string literals [-Wyacc]
22 | %define namespace "rostlab::blast"
| ^~~~~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.1-34: warning: deprecated directive: '%define namespace "rostlab::blast"', use '%define api.namespace {rostlab::blast}' [-Wdeprecated]
22 | %define namespace "rostlab::blast"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.namespace {rostlab::blast}
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:24.1-5: warning: POSIX Yacc does not support %code [-Wyacc]
24 | %code requires {
| ^~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:37.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc]
37 | %error-verbose
| ^~~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:37.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated]
37 | %error-verbose
| ^~~~~~~~~~~~~~
| %define parse.error verbose
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:39.1-15: warning: POSIX Yacc does not support %initial-action [-Wyacc]
39 | %initial-action
| ^~~~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:53.1-5: warning: POSIX Yacc does not support %code [-Wyacc]
53 | %code {
| ^~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:59.29-41: warning: POSIX Yacc does not support string literals [-Wyacc]
59 | %token END 0 "end of file"
| ^~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:72.29-36: warning: POSIX Yacc does not support string literals [-Wyacc]
72 | %token QUERYEQ "Query="
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:73.29-39: warning: POSIX Yacc does not support string literals [-Wyacc]
73 | %token DATABASECOLON "Database:"
| ^~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:74.29-48: warning: POSIX Yacc does not support string literals [-Wyacc]
74 | %token RESFROMROUND "Results from round"
| ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:75.29-37: warning: POSIX Yacc does not support string literals [-Wyacc]
75 | %token SCOREEQ "Score ="
| ^~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:76.29-38: warning: POSIX Yacc does not support string literals [-Wyacc]
76 | %token EXPECTEQ "Expect ="
| ^~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:77.29-37: warning: POSIX Yacc does not support string literals [-Wyacc]
77 | %token METHODCOLON "Method:"
| ^~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:78.29-42: warning: POSIX Yacc does not support string literals [-Wyacc]
78 | %token IDENTITIESEQ "Identities ="
| ^~~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:79.29-41: warning: POSIX Yacc does not support string literals [-Wyacc]
79 | %token POSITIVESEQ "Positives ="
| ^~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:80.29-36: warning: POSIX Yacc does not support string literals [-Wyacc]
80 | %token GAPSEQ "Gaps ="
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:81.29-38: warning: POSIX Yacc does not support string literals [-Wyacc]
81 | %token STRANDEQ "Strand ="
| ^~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:82.29-37: warning: POSIX Yacc does not support string literals [-Wyacc]
82 | %token FRAMEEQ "Frame ="
| ^~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:83.29-36: warning: POSIX Yacc does not support string literals [-Wyacc]
83 | %token QUERYCOLON "Query:"
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:84.29-36: warning: POSIX Yacc does not support string literals [-Wyacc]
84 | %token SBJCTCOLON "Sbjct:"
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:88.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
88 | %destructor { delete $$; } <sval>
| ^~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:90.1-8: warning: POSIX Yacc does not support %printer [-Wyacc]
90 | %printer { debug_stream () << *$$; } <sval>
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:91.1-8: warning: POSIX Yacc does not support %printer [-Wyacc]
91 | %printer { debug_stream () << $$; } <ival>
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:109.9-16: warning: POSIX Yacc does not support string literals [-Wyacc]
109 | query: "Query=" STRING INT
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:122.11-21: warning: POSIX Yacc does not support string literals [-Wyacc]
122 | database: "Database:" STRING INT INT
| ^~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:137.15-34: warning: POSIX Yacc does not support string literals [-Wyacc]
137 | | "Results from round" INT
| ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:201.19-27: warning: POSIX Yacc does not support string literals [-Wyacc]
201 | hsp_headerfield: "Score =" num INT
| ^~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:203.19-28: warning: POSIX Yacc does not support string literals [-Wyacc]
203 | | "Expect =" num
| ^~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:205.19-27: warning: POSIX Yacc does not support string literals [-Wyacc]
205 | | "Method:" STRING
| ^~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:207.19-32: warning: POSIX Yacc does not support string literals [-Wyacc]
207 | | "Identities =" INT
| ^~~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:209.19-31: warning: POSIX Yacc does not support string literals [-Wyacc]
209 | | "Positives =" INT
| ^~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:211.19-26: warning: POSIX Yacc does not support string literals [-Wyacc]
211 | | "Gaps =" INT
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:213.19-28: warning: POSIX Yacc does not support string literals [-Wyacc]
213 | | "Strand =" STRING '/' STRING
| ^~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:215.19-27: warning: POSIX Yacc does not support string literals [-Wyacc]
215 | | "Frame =" INT '/' INT
| ^~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:217.19-27: warning: POSIX Yacc does not support string literals [-Wyacc]
217 | | "Frame =" INT
| ^~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:224.15-22: warning: POSIX Yacc does not support string literals [-Wyacc]
224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:224.46-53: warning: POSIX Yacc does not support string literals [-Wyacc]
224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:247.15-22: warning: POSIX Yacc does not support string literals [-Wyacc]
247 | | "Query:" '0' /* bug as far as I can tell */
| ^~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.1-34: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated]
22 | %define namespace "rostlab::blast"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
updating rostlab/blast-parser-location.h
updating rostlab/blast-parser-position.h
updating rostlab/blast-parser-stack.h
updating rostlab/blast-parser-parser.h
sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp
sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h
sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h
make all-am
make[5]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp
\
\
/bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c blast-parser-parser.cpp -o librostlab_blast_la-blast-parser-parser.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c librostlab_blast_la-blast-parser-scanner.cpp -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 0:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab-blast.la -rpath /usr/lib/x86_64-linux-gnu librostlab_blast_la-blast-parser-driver.lo librostlab_blast_la-blast-parser-parser.lo librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/librostlab_blast_la-blast-parser-driver.o .libs/librostlab_blast_la-blast-parser-parser.o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-blast-1.0.1=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab-blast.so.0 -o .libs/librostlab-blast.so.0.0.0
libtool: link: (cd ".libs" && rm -f "librostlab-blast.so.0" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so.0")
libtool: link: (cd ".libs" && rm -f "librostlab-blast.so" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so")
libtool: link: ar cr .libs/librostlab-blast.a librostlab_blast_la-blast-parser-driver.o librostlab_blast_la-blast-parser-parser.o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
libtool: link: ranlib .libs/librostlab-blast.a
libtool: link: ( cd ".libs" && rm -f "librostlab-blast.la" && ln -s "../librostlab-blast.la" "librostlab-blast.la" )
make[5]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[4]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[4]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
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make[2]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
/usr/bin/make -C lib doxygen-doc
make[2]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
rm -rf ../doxygen-doc
SRCDIR='.' PROJECT='librostlab-blast' DOCDIR='../doxygen-doc' VERSION='1.0.1' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./Doxyfile
warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete.
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warning: Tag 'DOT_TRANSPARENT' at line 1611 of file './Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
Using the default: a4!
warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
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error: Tag file '/usr/share/doc/librostlab-doc/librostlab.tag' does not exist or is not a file. Skipping it...
/build/reproducible-path/librostlab-blast-1.0.1/lib/rostlab/blast-parser-location.h:34: warning: the name 'location.hh' supplied as the argument in the \file statement is not an input file
/build/reproducible-path/librostlab-blast-1.0.1/lib/rostlab/blast-parser-parser.h:35: warning: the name 'y.tab.h' supplied as the argument in the \file statement is not an input file
Doxygen version used: 1.9.8
Notice: Output directory '../doxygen-doc' does not exist. I have created it for you.
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type lookup cache used 573/65536 hits=1135 misses=666
symbol lookup cache used 476/65536 hits=2431 misses=476
finished...
make[2]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_auto_test
make -j20 check "TESTSUITEFLAGS=-j20 --verbose" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
Making check in lib
make[2]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make check-am
make[3]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[2]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[2]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
make[2]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
make -j1 install DESTDIR=/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
Making install in lib
make[2]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make install-am
make[3]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[4]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
/usr/bin/mkdir -p '/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu'
/bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.so.0.0.0
libtool: install: (cd /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; })
libtool: install: (cd /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; })
libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.la
libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.a
libtool: install: chmod 644 /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.a
libtool: install: ranlib /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.a
libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu'
/usr/bin/mkdir -p '/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
/usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
/usr/bin/mkdir -p '/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
/usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
make[4]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[3]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[2]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1/lib'
make[2]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
make[3]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
make[3]: Nothing to be done for 'install-exec-am'.
/usr/bin/mkdir -p '/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/share/doc/librostlab-blast/examples'
/usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/share/doc/librostlab-blast/examples'
make[3]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
make[2]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
d-shlibmove --commit \
--multiarch \
--exclude-la \
--v5 \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/librostlab-blast0-dev/usr/lib/x86_64-linux-gnu
install -d -m 755 debian/librostlab-blast0v5/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.a debian/librostlab-blast0-dev/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.so debian/librostlab-blast0-dev/usr/lib/x86_64-linux-gnu
mv /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.so.0 debian/librostlab-blast0v5/usr/lib/x86_64-linux-gnu
mv /build/reproducible-path/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.so.0.0.0 debian/librostlab-blast0v5/usr/lib/x86_64-linux-gnu
PKGDEV=librostlab-blast0-dev
PKGSHL=librostlab-blast0v5
install -d -m 755 debian/librostlab-blast0-dev/usr/include
mv debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev/usr/include
find debian -name "lib*.la" -delete
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
debian/rules override_dh_installdocs-indep
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_installdocs
dh_installdocs: warning: Cannot auto-detect main package for librostlab-blast-doc. If the default is wrong, please use --doc-main-package
find debian -name "*.md5" -delete
sed -i 's@<path>/.*/lib/rostlab/</path>@/fakebuildpath/lib/rostlab/</path>@' \
debian/librostlab-blast-doc/usr/share/doc/librostlab-blast-doc/librostlab-blast.tag
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_installdocs -Nlibrostlab-blast-doc
dh_installchangelogs
dh_installexamples
dh_perl
debian/rules override_dh_link
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
find debian -name jquery.js -delete
dh_link
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_strip_nondeterminism
debian/rules override_dh_compress
make[1]: Entering directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_compress -Xlibrostlab-blast.tag
make[1]: Leaving directory '/build/reproducible-path/librostlab-blast-1.0.1'
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: Depends field of package librostlab-blast-doc: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-14_amd64.deb'.
dpkg-deb: building package 'librostlab-blast0v5-dbgsym' in '../librostlab-blast0v5-dbgsym_1.0.1-14_amd64.deb'.
dpkg-deb: building package 'librostlab-blast-doc' in '../librostlab-blast-doc_1.0.1-14_all.deb'.
dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-14_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../librostlab-blast_1.0.1-14_amd64.buildinfo
dpkg-genchanges --build=binary -O../librostlab-blast_1.0.1-14_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/575315 and its subdirectories
I: Current time: Tue Mar 4 15:51:20 -12 2025
I: pbuilder-time-stamp: 1741146680
Wed Mar 5 03:51:21 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Wed Mar 5 03:51:21 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Wed Mar 5 03:56:58 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Wed Mar 5 03:56:59 UTC 2025 I: librostlab-blast_1.0.1-14_amd64.changes:
Format: 1.8
Date: Wed, 24 Apr 2024 13:16:38 +0200
Source: librostlab-blast
Binary: librostlab-blast-doc librostlab-blast0-dev librostlab-blast0v5 librostlab-blast0v5-dbgsym
Architecture: all amd64
Version: 1.0.1-14
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra
librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra
librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI BLAST progra
Closes: 1048643
Changes:
librostlab-blast (1.0.1-14) unstable; urgency=medium
.
* d/control: add myself to uploaders.
* d/control: declare compliance to standards version 4.7.0.
* d/clean: new: cleanup doxygen-doc/. (Closes: #1048643)
* d/control: mark librostlab-blast0v5 M-A: same.
* d/control: mark librostlab-blast-doc M-A: foreign.
Checksums-Sha1:
478c845dbd2fb861c19627ec6298f44691253651 414888 librostlab-blast-doc_1.0.1-14_all.deb
50d34840a5de5bbaa6839f396668508071177ab2 91552 librostlab-blast0-dev_1.0.1-14_amd64.deb
9b366fce0bfc8097e348e4f17c97368091154bcc 417960 librostlab-blast0v5-dbgsym_1.0.1-14_amd64.deb
251beaba55630cba80c477a973aa8469fc1ceee4 76976 librostlab-blast0v5_1.0.1-14_amd64.deb
6ffe11d6347caa15383900d7263ffff8a119b082 9922 librostlab-blast_1.0.1-14_amd64.buildinfo
Checksums-Sha256:
f2d01e570366bd5df53aa2e02d68845018e86cf7be1ab1cdbb1f4e09a030e0a4 414888 librostlab-blast-doc_1.0.1-14_all.deb
7a33d11623e293e38187f642e9a6b18fab422d4118031b0a238a86eb0fb5245f 91552 librostlab-blast0-dev_1.0.1-14_amd64.deb
9d643db389db2c4e77ae6677c79ab8bc696ce6b37b5e39d0fc6f9dc58b9e2d70 417960 librostlab-blast0v5-dbgsym_1.0.1-14_amd64.deb
0132061e9f85b970b5af6feb1bd92441ed49499cde97a25fd76d0be8fe188a92 76976 librostlab-blast0v5_1.0.1-14_amd64.deb
39af2b70a62b1d37f3067f39a06b22810ced86ce8cc495a7a1b1783bf9dbc87a 9922 librostlab-blast_1.0.1-14_amd64.buildinfo
Files:
fca453b3a729be255c1bc03c437d9647 414888 doc optional librostlab-blast-doc_1.0.1-14_all.deb
21db5f8c5d40bb8e52ce2d1d5357b34a 91552 libdevel optional librostlab-blast0-dev_1.0.1-14_amd64.deb
85caec99bafe7b7d1d24ed38461b58ab 417960 debug optional librostlab-blast0v5-dbgsym_1.0.1-14_amd64.deb
23c19d872aa396912682305e2e6774c4 76976 libs optional librostlab-blast0v5_1.0.1-14_amd64.deb
28cccd59a72b74bccbfc243575bd653a 9922 science optional librostlab-blast_1.0.1-14_amd64.buildinfo
Wed Mar 5 03:57:00 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_17-31848.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.D60W75Pq/librostlab-blast_1.0.1-14.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.D60W75Pq/librostlab-blast_1.0.1-14.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.D60W75Pq/librostlab-blast_1.0.1-14.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.D60W75Pq/b1/librostlab-blast_1.0.1-14_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.D60W75Pq/b2/librostlab-blast_1.0.1-14_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.004s)
0.004s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 236ms
CPU time consumed: 233ms
Wed Mar 5 03:57:01 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Wed Mar 5 03:57:01 UTC 2025 I: librostlab-blast from trixie built successfully and reproducibly on amd64.
Wed Mar 5 03:57:02 UTC 2025 I: Submitting .buildinfo files to external archives:
Wed Mar 5 03:57:02 UTC 2025 I: Submitting 12K b1/librostlab-blast_1.0.1-14_amd64.buildinfo.asc
Wed Mar 5 03:57:04 UTC 2025 I: Submitting 12K b2/librostlab-blast_1.0.1-14_amd64.buildinfo.asc
Wed Mar 5 03:57:06 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Mar 5 03:57:06 UTC 2025 I: Done submitting .buildinfo files.
Wed Mar 5 03:57:06 UTC 2025 I: Removing signed librostlab-blast_1.0.1-14_amd64.buildinfo.asc files:
removed './b1/librostlab-blast_1.0.1-14_amd64.buildinfo.asc'
removed './b2/librostlab-blast_1.0.1-14_amd64.buildinfo.asc'