Mon Feb 24 22:15:48 UTC 2025 I: starting to build lighter/trixie/amd64 on jenkins on '2025-02-24 22:15'
Mon Feb 24 22:15:48 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/47949/console.log
Mon Feb 24 22:15:48 UTC 2025 I: Downloading source for trixie/lighter=1.1.3-1
--2025-02-24 22:15:49-- http://deb.debian.org/debian/pool/main/l/lighter/lighter_1.1.3-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2375 (2.3K) [text/prs.lines.tag]
Saving to: ‘lighter_1.1.3-1.dsc’
0K .. 100% 412M=0s
2025-02-24 22:15:49 (412 MB/s) - ‘lighter_1.1.3-1.dsc’ saved [2375/2375]
Mon Feb 24 22:15:49 UTC 2025 I: lighter_1.1.3-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: lighter
Binary: lighter
Architecture: any
Version: 1.1.3-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/mourisl/Lighter
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/lighter
Vcs-Git: https://salsa.debian.org/med-team/lighter.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), zlib1g-dev
Package-List:
lighter deb science optional arch=any
Checksums-Sha1:
4514e90d49f23146b25ebcefd8c6eec87f391ef2 1431989 lighter_1.1.3.orig-debian-tests-data.tar.gz
4a4f367668bf20fbcac195fee837f9936e219479 48575 lighter_1.1.3.orig.tar.gz
54b36092e807ace7ed802ee2e0046d48a92d7ac8 16240 lighter_1.1.3-1.debian.tar.xz
Checksums-Sha256:
3f66775854ba9ff5509e8c8ca922c718f0fca97b8986fe044b3ed354abda180b 1431989 lighter_1.1.3.orig-debian-tests-data.tar.gz
c8a251c410805f82dad77e40661f0faf14ec82dedb3ff717094ba8ff4ef94465 48575 lighter_1.1.3.orig.tar.gz
5644a2eb3e7e45fa582d088ebd152f17c1041ceab3e27077c120d630af0fa092 16240 lighter_1.1.3-1.debian.tar.xz
Files:
baf7c8d62a6bbadfe389ed2bb4878ef9 1431989 lighter_1.1.3.orig-debian-tests-data.tar.gz
d9a8572227640ce7c5249f41b339d5d6 48575 lighter_1.1.3.orig.tar.gz
38fd04b458e7f17938e82297c5d535fe 16240 lighter_1.1.3-1.debian.tar.xz
Dgit: c24cffee4b1c15a4997f7f80316e518031c41fbf debian archive/debian/1.1.3-1 https://git.dgit.debian.org/lighter
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Mon Feb 24 22:15:49 UTC 2025 I: Checking whether the package is not for us
Mon Feb 24 22:15:49 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net.
Mon Feb 24 22:15:49 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net.
Mon Feb 24 22:16:44 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Feb 24 10:15:50 -12 2025
I: pbuilder-time-stamp: 1740435350
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [lighter_1.1.3-1.dsc]
I: copying [./lighter_1.1.3.orig-debian-tests-data.tar.gz]
I: copying [./lighter_1.1.3.orig.tar.gz]
I: copying [./lighter_1.1.3-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./lighter_1.1.3-1.dsc: unsupported subcommand
dpkg-source: info: extracting lighter in lighter-1.1.3
dpkg-source: info: unpacking lighter_1.1.3.orig.tar.gz
dpkg-source: info: unpacking lighter_1.1.3.orig-debian-tests-data.tar.gz
dpkg-source: info: unpacking lighter_1.1.3-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying ftbfs.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying auto-gitignore
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2746535/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='2129a847b220424dbc743eeb0ef15669'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2746535'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zNTnRJdt/pbuilderrc_PQ8n --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zNTnRJdt/b1 --logfile b1/build.log lighter_1.1.3-1.dsc'
SUDO_GID='111'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2746535/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19802 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded.
Need to get 21.5 MB of archives. After unpacking 79.3 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB]
Get: 31 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Fetched 21.5 MB in 0s (61.4 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 19802 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
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Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ...
Unpacking file (1:5.45-3+b1) ...
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Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ...
Unpacking gettext-base (0.23.1-1) ...
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Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
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Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ...
Unpacking groff-base (1.23.0-7) ...
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Preparing to unpack .../07-bsdextrautils_2.40.4-4_amd64.deb ...
Unpacking bsdextrautils (2.40.4-4) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
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Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ...
Unpacking man-db (2.13.0-1) ...
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Preparing to unpack .../10-m4_1.4.19-5_amd64.deb ...
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Unpacking libtool (2.5.4-3) ...
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Unpacking dh-strip-nondeterminism (1.14.1-2) ...
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Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
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Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libpipeline1:amd64 (1.5.8-1) ...
Setting up libicu72:amd64 (72.1-6) ...
Setting up bsdextrautils (2.40.4-4) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libmagic1t64:amd64 (1:5.45-3+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:amd64 (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libunistring5:amd64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
Reading state information...
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Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/lighter-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lighter_1.1.3-1_source.changes
dpkg-buildpackage: info: source package lighter
dpkg-buildpackage: info: source version 1.1.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
dh_auto_clean
make -j20 clean
make[1]: Entering directory '/build/reproducible-path/lighter-1.1.3'
rm -f *.o *.gch lighter
make[1]: Leaving directory '/build/reproducible-path/lighter-1.1.3'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j20 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/lighter-1.1.3'
g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lighter-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.cpp
g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lighter-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ErrorCorrection.o ErrorCorrection.cpp
g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lighter-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o GetKmers.o GetKmers.cpp
In file included from Store.h:10,
from main.cpp:13:
bloom_filter.hpp: In member function 'void bloom_filter::Input(FILE*)':
bloom_filter.hpp:799:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
799 | fread( patterns, sizeof( patterns ), 1, fp ) ;
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bloom_filter.hpp:800:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
800 | fread( bit_table_,sizeof( unsigned char ), raw_table_size_, fp ) ;
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ErrorCorrection.h:8,
from main.cpp:14:
Reads.h: In member function 'void Reads::OutputBatch(_Read*, int, bool, int)':
Reads.h:414:80: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
414 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~
Reads.h:414:67: note: directive argument in the range [1, 2147483647]
414 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from main.cpp:1:
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void Reads::OutputBatch(_Read*, int, bool, int)' at Reads.h:414:14:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 14 and 23 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Reads.h: In member function 'void Reads::OutputBatch(_Read*, int, bool, int)':
Reads.h:414:80: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
414 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~
Reads.h:414:67: note: directive argument in the range [1, 2147483647]
414 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~~~~~~~~~~~~~~~
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void Reads::OutputBatch(_Read*, int, bool, int)' at Reads.h:414:14:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 14 and 23 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Reads.h: In member function 'void Reads::OutputBatch(_Read*, int, bool, int)':
Reads.h:420:88: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
420 | sprintf( buffer3, " bad_suffix=%d", badSuffix ) ;
| ^~
Reads.h:420:75: note: directive argument in the range [1, 2147483647]
420 | sprintf( buffer3, " bad_suffix=%d", badSuffix ) ;
| ^~~~~~~~~~~~~~~~
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void Reads::OutputBatch(_Read*, int, bool, int)' at Reads.h:420:15:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 14 and 23 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Reads.h: In function 'int main(int, char**)':
Reads.h:314:72: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
314 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~
In member function 'void Reads::Output(int, int, int, int, bool)',
inlined from 'int main(int, char**)' at main.cpp:771:16:
Reads.h:314:59: note: directive argument in the range [1, 2147483647]
314 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~~~~~~~~~~~~~~~
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void Reads::Output(int, int, int, int, bool)' at Reads.h:314:13,
inlined from 'int main(int, char**)' at main.cpp:771:16:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 14 and 23 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Reads.h: In function 'int main(int, char**)':
Reads.h:320:80: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
320 | sprintf( buffer3, " bad_suffix=%d", badSuffix ) ;
| ^~
In member function 'void Reads::Output(int, int, int, int, bool)',
inlined from 'int main(int, char**)' at main.cpp:771:16:
Reads.h:320:67: note: directive argument in the range [1, 2147483647]
320 | sprintf( buffer3, " bad_suffix=%d", badSuffix ) ;
| ^~~~~~~~~~~~~~~~
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void Reads::Output(int, int, int, int, bool)' at Reads.h:320:14,
inlined from 'int main(int, char**)' at main.cpp:771:16:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 14 and 23 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Reads.h: In function 'int main(int, char**)':
Reads.h:414:80: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
414 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~
In member function 'void Reads::OutputBatch(_Read*, int, bool, int)',
inlined from 'int main(int, char**)' at main.cpp:808:21:
Reads.h:414:67: note: directive argument in the range [1, 2147483647]
414 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~~~~~~~~~~~~~~~
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void Reads::OutputBatch(_Read*, int, bool, int)' at Reads.h:414:14,
inlined from 'int main(int, char**)' at main.cpp:808:21:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 14 and 23 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Reads.h: In function 'int main(int, char**)':
Reads.h:414:80: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
414 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~
In member function 'void Reads::OutputBatch(_Read*, int, bool, int)',
inlined from 'int main(int, char**)' at main.cpp:808:21:
Reads.h:414:67: note: directive argument in the range [1, 2147483647]
414 | sprintf( buffer2, " bad_prefix=%d", badPrefix ) ;
| ^~~~~~~~~~~~~~~~
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void Reads::OutputBatch(_Read*, int, bool, int)' at Reads.h:414:14,
inlined from 'int main(int, char**)' at main.cpp:808:21:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 14 and 23 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Reads.h: In function 'int main(int, char**)':
Reads.h:420:88: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
420 | sprintf( buffer3, " bad_suffix=%d", badSuffix ) ;
| ^~
In member function 'void Reads::OutputBatch(_Read*, int, bool, int)',
inlined from 'int main(int, char**)' at main.cpp:808:21:
Reads.h:420:75: note: directive argument in the range [1, 2147483647]
420 | sprintf( buffer3, " bad_suffix=%d", badSuffix ) ;
| ^~~~~~~~~~~~~~~~
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void Reads::OutputBatch(_Read*, int, bool, int)' at Reads.h:420:15,
inlined from 'int main(int, char**)' at main.cpp:808:21:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 14 and 23 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -o lighter -g -O2 -ffile-prefix-map=/build/reproducible-path/lighter-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 ErrorCorrection.o GetKmers.o main.o -lpthread -lz -Wl,-z,relro -Wl,-z,now
make[1]: Leaving directory '/build/reproducible-path/lighter-1.1.3'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/lighter/
dh_install
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'lighter' in '../lighter_1.1.3-1_amd64.deb'.
dpkg-deb: building package 'lighter-dbgsym' in '../lighter-dbgsym_1.1.3-1_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../lighter_1.1.3-1_amd64.buildinfo
dpkg-genchanges --build=binary -O../lighter_1.1.3-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2746535 and its subdirectories
I: Current time: Mon Feb 24 10:16:43 -12 2025
I: pbuilder-time-stamp: 1740435403
Mon Feb 24 22:16:44 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net.
Mon Feb 24 22:16:44 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net.
Mon Feb 24 22:17:34 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net.
Mon Feb 24 22:17:34 UTC 2025 I: lighter_1.1.3-1_amd64.changes:
Format: 1.8
Date: Sat, 09 Nov 2024 20:11:20 +0100
Source: lighter
Binary: lighter lighter-dbgsym
Architecture: amd64
Version: 1.1.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
lighter - fast and memory-efficient sequencing error corrector
Changes:
lighter (1.1.3-1) unstable; urgency=medium
.
* New upstream version 1.1.3
* ftbfs.patch: unfuzz.
* d/control: declare compliance to standards version 4.7.0.
Checksums-Sha1:
67135cbf1af32ee1ffb0b273f541b4ea628496ba 183448 lighter-dbgsym_1.1.3-1_amd64.deb
c04f4ccb00538277a1654537416d57a5a6b3e6cc 4901 lighter_1.1.3-1_amd64.buildinfo
5ea1c8e9cdd69e28cdd99fde79122061a7ad0737 49248 lighter_1.1.3-1_amd64.deb
Checksums-Sha256:
e940c7e1ab5957cf08be3e3a684ed3b324092c3b2c4af395543abee739a2ed0c 183448 lighter-dbgsym_1.1.3-1_amd64.deb
c0ee0e6b742780f87b68f3a39f2ee82b61900a5026e89f2b5c59ece0d82a5f8b 4901 lighter_1.1.3-1_amd64.buildinfo
b3a873b544b2693f98215b3963292ffb8a3a3039896f6596db660204ce48bda1 49248 lighter_1.1.3-1_amd64.deb
Files:
66b08d43f817e327e4023f61580faabd 183448 debug optional lighter-dbgsym_1.1.3-1_amd64.deb
9ed929118d6412870fe8ae022b370b36 4901 science optional lighter_1.1.3-1_amd64.buildinfo
e3b1d46a4bdf8e91018f9c6e2e890af9 49248 science optional lighter_1.1.3-1_amd64.deb
Mon Feb 24 22:17:35 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_23-47949.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zNTnRJdt/lighter_1.1.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zNTnRJdt/lighter_1.1.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zNTnRJdt/lighter_1.1.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zNTnRJdt/b1/lighter_1.1.3-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zNTnRJdt/b2/lighter_1.1.3-1_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 217ms
CPU time consumed: 218ms
Mon Feb 24 22:17:36 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Mon Feb 24 22:17:36 UTC 2025 I: lighter from trixie built successfully and reproducibly on amd64.
Mon Feb 24 22:17:37 UTC 2025 I: Submitting .buildinfo files to external archives:
Mon Feb 24 22:17:37 UTC 2025 I: Submitting 8.0K b1/lighter_1.1.3-1_amd64.buildinfo.asc
Mon Feb 24 22:17:39 UTC 2025 I: Submitting 8.0K b2/lighter_1.1.3-1_amd64.buildinfo.asc
Mon Feb 24 22:17:39 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon Feb 24 22:17:39 UTC 2025 I: Done submitting .buildinfo files.
Mon Feb 24 22:17:39 UTC 2025 I: Removing signed lighter_1.1.3-1_amd64.buildinfo.asc files:
removed './b1/lighter_1.1.3-1_amd64.buildinfo.asc'
removed './b2/lighter_1.1.3-1_amd64.buildinfo.asc'