Wed Feb 19 20:03:05 UTC 2025 I: starting to build python-bcbio-gff/trixie/amd64 on jenkins on '2025-02-19 20:02'
Wed Feb 19 20:03:05 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_18/31030/console.log
Wed Feb 19 20:03:05 UTC 2025 I: Downloading source for trixie/python-bcbio-gff=0.7.1-2
--2025-02-19 20:03:05-- http://deb.debian.org/debian/pool/main/p/python-bcbio-gff/python-bcbio-gff_0.7.1-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2386 (2.3K) [text/prs.lines.tag]
Saving to: ‘python-bcbio-gff_0.7.1-2.dsc’
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2025-02-19 20:03:05 (405 MB/s) - ‘python-bcbio-gff_0.7.1-2.dsc’ saved [2386/2386]
Wed Feb 19 20:03:05 UTC 2025 I: python-bcbio-gff_0.7.1-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-bcbio-gff
Binary: python3-bcbio-gff
Architecture: all
Version: 0.7.1-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/chapmanb/bcbb/tree/master/gff
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-bcbio-gff
Vcs-Git: https://salsa.debian.org/med-team/python-bcbio-gff.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: python3-all, tar
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-biopython, python3-six, debhelper
Package-List:
python3-bcbio-gff deb python optional arch=all
Checksums-Sha1:
3d1dad12c7097b38106bb16d51a1359c40dea5a1 20102 python-bcbio-gff_0.7.1.orig.tar.gz
ac26b08213e8b94b3fb34611c73f2d65296f8507 23860 python-bcbio-gff_0.7.1-2.debian.tar.xz
Checksums-Sha256:
d1dc3294147b95baced6033f6386a0fed45c43767ef02d1223df5ef497e9cca6 20102 python-bcbio-gff_0.7.1.orig.tar.gz
295a72eb52b9ac39251b03940ad328fe024c95cbc93cf46ec7e59453a3533026 23860 python-bcbio-gff_0.7.1-2.debian.tar.xz
Files:
3037d9c40d8ccf904016a1f01a1022bc 20102 python-bcbio-gff_0.7.1.orig.tar.gz
19abf49dfaf9d5986d3dfd95bb09bb93 23860 python-bcbio-gff_0.7.1-2.debian.tar.xz
Dgit: ef3fd9c333841aa38ba996c53f99bcd20f4db159 debian archive/debian/0.7.1-2 https://git.dgit.debian.org/python-bcbio-gff
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Wed Feb 19 20:03:05 UTC 2025 I: Checking whether the package is not for us
Wed Feb 19 20:03:05 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net.
Wed Feb 19 20:03:05 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net.
Wed Feb 19 20:04:35 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Mar 24 14:26:06 -12 2026
I: pbuilder-time-stamp: 1774405566
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-bcbio-gff_0.7.1-2.dsc]
I: copying [./python-bcbio-gff_0.7.1.orig.tar.gz]
I: copying [./python-bcbio-gff_0.7.1-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./python-bcbio-gff_0.7.1-2.dsc: unsupported subcommand
dpkg-source: info: extracting python-bcbio-gff in python-bcbio-gff-0.7.1
dpkg-source: info: unpacking python-bcbio-gff_0.7.1.orig.tar.gz
dpkg-source: info: unpacking python-bcbio-gff_0.7.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python-syntax-warning.patch
dpkg-source: info: applying distutils-deprecation.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3985581/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='2f2cb65e46a5422385972a8183c3d15b'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3985581'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5cY6QfNy/pbuilderrc_VjyG --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5cY6QfNy/b1 --logfile b1/build.log python-bcbio-gff_0.7.1-2.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://213.165.73.152:3128'
I: uname -a
Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3985581/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-biopython, python3-six, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19809 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-six; however:
Package python3-six is not installed.
pbuilder-satisfydepends-dummy depends on debhelper; however:
Package debhelper is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-six{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs
0 packages upgraded, 125 newly installed, 0 to remove and 0 not upgraded.
Need to get 68.1 MB of archives. After unpacking 253 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-6 [257 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 22 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 27 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 30 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 31 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB]
Get: 32 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 33 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 34 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 36 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 39 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 40 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 41 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 42 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 44 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 59 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 61 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 62 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB]
Get: 63 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 64 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB]
Get: 65 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 66 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB]
Get: 67 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 68 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB]
Get: 69 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get: 70 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB]
Get: 71 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get: 72 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB]
Get: 73 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 74 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 75 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 76 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 77 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 78 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 79 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 80 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 81 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 82 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB]
Get: 83 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get: 84 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 85 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get: 86 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 87 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB]
Get: 88 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.83.3-2 [1511 kB]
Get: 89 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 90 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 91 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 92 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 93 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get: 94 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 95 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB]
Get: 96 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB]
Get: 97 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 98 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB]
Get: 99 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get: 100 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB]
Get: 101 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 102 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 103 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get: 104 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
Get: 105 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-1 [204 kB]
Get: 106 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB]
Get: 107 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB]
Get: 108 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get: 109 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get: 110 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get: 111 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB]
Get: 112 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB]
Get: 113 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.9-1 [681 kB]
Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.1-2 [1056 B]
Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB]
Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 11.1.0-5 [531 kB]
Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB]
Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB]
Get: 120 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B]
Get: 121 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.3.0-1 [1157 kB]
Get: 122 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB]
Get: 123 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.85+dfsg-2 [1674 kB]
Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.17.0-1 [16.5 kB]
Fetched 68.1 MB in 1s (103 MB/s)
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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Reading package lists...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/python-bcbio-gff-0.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bcbio-gff_0.7.1-2_source.changes
dpkg-buildpackage: info: source package python-bcbio-gff
dpkg-buildpackage: info: source version 0.7.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py clean
running clean
removing '/build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
I: pybuild base:311: python3.13 setup.py clean
running clean
removing '/build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
running config
I: pybuild base:311: python3.13 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py build
running build
running build_py
creating /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio
copying BCBio/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio
creating /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF
copying BCBio/GFF/GFFOutput.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF
copying BCBio/GFF/_utils.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF
copying BCBio/GFF/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF
copying BCBio/GFF/GFFParser.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF
I: pybuild base:311: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio
copying BCBio/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio
creating /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF
copying BCBio/GFF/GFFOutput.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF
copying BCBio/GFF/_utils.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF
copying BCBio/GFF/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF
copying BCBio/GFF/GFFParser.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build; python3.12 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
I: pybuild base:311: cd /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build; python3.13 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-bcbio-gff/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running install_lib
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/GFFOutput.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/_utils.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/__pycache__/GFFParser.cpython-312.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/__pycache__/GFFOutput.cpython-312.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/GFFParser.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/__pycache__
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/GFFOutput.py to GFFOutput.cpython-312.pyc
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/_utils.py to _utils.cpython-312.pyc
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/GFFParser.py to GFFParser.cpython-312.pyc
running install_egg_info
running egg_info
creating bcbio_gff.egg-info
writing bcbio_gff.egg-info/PKG-INFO
writing dependency_links to bcbio_gff.egg-info/dependency_links.txt
writing requirements to bcbio_gff.egg-info/requires.txt
writing top-level names to bcbio_gff.egg-info/top_level.txt
writing manifest file 'bcbio_gff.egg-info/SOURCES.txt'
reading manifest file 'bcbio_gff.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'bcbio_gff.egg-info/SOURCES.txt'
Copying bcbio_gff.egg-info to /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/bcbio_gff-0.7.1.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running install_lib
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF/GFFOutput.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF/_utils.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF/__pycache__/GFFOutput.cpython-313.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF/__pycache__/GFFParser.cpython-313.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/GFF/GFFParser.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF
creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/__pycache__
copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.13_bcbio-gff/build/BCBio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/__pycache__
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF/GFFOutput.py to GFFOutput.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF/_utils.py to _utils.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/BCBio/GFF/GFFParser.py to GFFParser.cpython-313.pyc
running install_egg_info
running egg_info
writing bcbio_gff.egg-info/PKG-INFO
writing dependency_links to bcbio_gff.egg-info/dependency_links.txt
writing requirements to bcbio_gff.egg-info/requires.txt
writing top-level names to bcbio_gff.egg-info/top_level.txt
reading manifest file 'bcbio_gff.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'bcbio_gff.egg-info/SOURCES.txt'
Copying bcbio_gff.egg-info to /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.13/dist-packages/bcbio_gff-0.7.1.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/python-bcbio-gff-0.7.1'
dh_install
find debian -name __pycache__ -type d | xargs rm -rf
make[1]: Leaving directory '/build/reproducible-path/python-bcbio-gff-0.7.1'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installexamples -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-bcbio-gff' in '../python3-bcbio-gff_0.7.1-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-bcbio-gff_0.7.1-2_amd64.buildinfo
dpkg-genchanges --build=binary -O../python-bcbio-gff_0.7.1-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3985581 and its subdirectories
I: Current time: Tue Mar 24 14:27:33 -12 2026
I: pbuilder-time-stamp: 1774405653
Wed Feb 19 20:04:35 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net.
Wed Feb 19 20:04:35 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net.
Wed Feb 19 20:13:34 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
Wed Feb 19 20:13:35 UTC 2025 I: python-bcbio-gff_0.7.1-2_amd64.changes:
Format: 1.8
Date: Tue, 05 Nov 2024 22:59:55 +0100
Source: python-bcbio-gff
Binary: python3-bcbio-gff
Architecture: all
Version: 0.7.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
python3-bcbio-gff - Python3 library to read and write Generic Feature Format
Closes: 1085892
Changes:
python-bcbio-gff (0.7.1-2) unstable; urgency=medium
.
* python-syntax-warning.patch: new: fix SyntaxWarning. (Closes: #1085892)
* d/control: declare compliance to standards version 4.7.0.
* distutils-deprecation.patch: new: remove use of deprecated distutils.
Checksums-Sha1:
576803bbe60c89566c857991a5175925e30316e2 7524 python-bcbio-gff_0.7.1-2_amd64.buildinfo
a8ecec8b2b234a1b2d9d13eddd931357845afd1c 33692 python3-bcbio-gff_0.7.1-2_all.deb
Checksums-Sha256:
2fbe63e941bbc3d8471fdf22dd53ae30fd9f36a061c6ba2880b973d190a55bcd 7524 python-bcbio-gff_0.7.1-2_amd64.buildinfo
c026f0652f44043b065d2a39fcda88cd22a574aa42411b03645242c36326a53d 33692 python3-bcbio-gff_0.7.1-2_all.deb
Files:
0fed294d3b25ddcdfdbb4380dc6ee99a 7524 science optional python-bcbio-gff_0.7.1-2_amd64.buildinfo
153e159475b352f66cdc966deb05a945 33692 python optional python3-bcbio-gff_0.7.1-2_all.deb
Wed Feb 19 20:13:36 UTC 2025 I: diffoscope 288 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_18-31030.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5cY6QfNy/python-bcbio-gff_0.7.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5cY6QfNy/python-bcbio-gff_0.7.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5cY6QfNy/python-bcbio-gff_0.7.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5cY6QfNy/b1/python-bcbio-gff_0.7.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5cY6QfNy/b2/python-bcbio-gff_0.7.1-2_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.004s)
0.004s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 278ms
CPU time consumed: 278ms
Wed Feb 19 20:13:37 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists.
Wed Feb 19 20:13:37 UTC 2025 I: python-bcbio-gff from trixie built successfully and reproducibly on amd64.
Wed Feb 19 20:13:38 UTC 2025 I: Submitting .buildinfo files to external archives:
Wed Feb 19 20:13:38 UTC 2025 I: Submitting 12K b1/python-bcbio-gff_0.7.1-2_amd64.buildinfo.asc
Wed Feb 19 20:13:38 UTC 2025 I: Submitting 12K b2/python-bcbio-gff_0.7.1-2_amd64.buildinfo.asc
Wed Feb 19 20:13:39 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Feb 19 20:13:39 UTC 2025 I: Done submitting .buildinfo files.
Wed Feb 19 20:13:39 UTC 2025 I: Removing signed python-bcbio-gff_0.7.1-2_amd64.buildinfo.asc files:
removed './b1/python-bcbio-gff_0.7.1-2_amd64.buildinfo.asc'
removed './b2/python-bcbio-gff_0.7.1-2_amd64.buildinfo.asc'