Mon Mar 3 07:54:20 UTC 2025 I: starting to build python-biom-format/trixie/amd64 on jenkins on '2025-03-03 07:54'
Mon Mar 3 07:54:20 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/31761/console.log
Mon Mar 3 07:54:20 UTC 2025 I: Downloading source for trixie/python-biom-format=2.1.16-1
--2025-03-03 07:54:20-- http://deb.debian.org/debian/pool/main/p/python-biom-format/python-biom-format_2.1.16-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2628 (2.6K) [text/prs.lines.tag]
Saving to: ‘python-biom-format_2.1.16-1.dsc’
0K .. 100% 360M=0s
2025-03-03 07:54:20 (360 MB/s) - ‘python-biom-format_2.1.16-1.dsc’ saved [2628/2628]
Mon Mar 3 07:54:20 UTC 2025 I: python-biom-format_2.1.16-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-biom-format
Binary: python3-biom-format, python-biom-format-doc
Architecture: any all
Version: 2.1.16-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://biom-format.org/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-biom-format
Vcs-Git: https://salsa.debian.org/med-team/python-biom-format.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest <!nocheck>, python3-pytest-cov <!nocheck>
Package-List:
python-biom-format-doc deb doc optional arch=all
python3-biom-format deb python optional arch=any
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Checksums-Sha256:
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Files:
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20338d1c1fdcb1830732f53a66673d4d 11564 python-biom-format_2.1.16-1.debian.tar.xz
Dgit: 3e4793e9bfdb150e61ff2a7bbbfe29510f8824f6 debian archive/debian/2.1.16-1 https://git.dgit.debian.org/python-biom-format
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Mon Mar 3 07:54:20 UTC 2025 I: Checking whether the package is not for us
Mon Mar 3 07:54:20 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net.
Mon Mar 3 07:54:20 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net.
Mon Mar 3 08:06:49 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Mar 2 19:54:23 -12 2025
I: pbuilder-time-stamp: 1740988463
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-biom-format_2.1.16-1.dsc]
I: copying [./python-biom-format_2.1.16.orig.tar.gz]
I: copying [./python-biom-format_2.1.16-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.16-1.dsc: unsupported subcommand
dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.16
dpkg-source: info: unpacking python-biom-format_2.1.16.orig.tar.gz
dpkg-source: info: unpacking python-biom-format_2.1.16-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying posix_shell.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2960820/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='cf5c326771ba47ed8abf41f493bccd7c'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2960820'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.goduWQJj/pbuilderrc_Obtg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.goduWQJj/b1 --logfile b1/build.log python-biom-format_2.1.16-1.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2960820/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19802 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on help2man; however:
Package help2man is not installed.
pbuilder-satisfydepends-dummy depends on bash-completion; however:
Package bash-completion is not installed.
pbuilder-satisfydepends-dummy depends on cython3; however:
Package cython3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
Package python3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-click; however:
Package python3-click is not installed.
pbuilder-satisfydepends-dummy depends on python3-h5py; however:
Package python3-h5py is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpydoc; however:
Package python3-numpydoc is not installed.
pbuilder-satisfydepends-dummy depends on python3-pandas; however:
Package python3-pandas is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-scipy; however:
Package python3-scipy is not installed.
pbuilder-satisfydepends-dummy depends on python3-sphinx; however:
Package python3-sphinx is not installed.
pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
Package python3-matplotlib is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however:
Package python3-pytest-cov is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-zipp{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-tables shared-mime-info wget xdg-user-dirs
0 packages upgraded, 217 newly installed, 0 to remove and 0 not upgraded.
Need to get 149 MB of archives. After unpacking 593 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-1 [27.1 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 12.0.0 [28.9 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-1 [10.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-1 [28.1 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-2+b1 [138 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:2.2.3+ds-2+b1 [5081 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB]
Get: 22 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 bash-completion all 1:2.16.0-7 [319 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 30 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 31 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 32 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB]
Get: 33 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 34 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 36 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB]
Get: 39 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 40 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get: 41 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get: 42 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.47-1 [282 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 44 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 49 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 51 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB]
Get: 54 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get: 55 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 56 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB]
Get: 57 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get: 58 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get: 59 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B]
Get: 61 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB]
Get: 62 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 63 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 65 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 66 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 67 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 68 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 69 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 70 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 71 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 72 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB]
Get: 73 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 74 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 75 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 76 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB]
Get: 77 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB]
Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB]
Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.8.0-1 [724 kB]
Get: 88 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB]
Get: 89 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB]
Get: 90 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB]
Get: 91 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.3-1 [190 kB]
Get: 92 http://deb.debian.org/debian trixie/main amd64 help2man amd64 1.49.3 [198 kB]
Get: 93 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB]
Get: 94 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 95 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 96 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 97 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 98 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get: 99 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 100 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
Get: 101 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB]
Get: 102 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB]
Get: 103 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB]
Get: 104 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 105 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB]
Get: 106 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 107 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 108 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get: 109 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get: 110 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 111 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 112 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB]
Get: 113 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get: 114 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB]
Get: 115 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 116 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB]
Get: 117 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB]
Get: 118 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.83.4-1 [1512 kB]
Get: 119 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 120 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB]
Get: 121 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B]
Get: 122 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB]
Get: 123 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB]
Get: 124 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB]
Get: 125 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 126 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB]
Get: 127 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 128 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-hotkeys all 0.2.0-1 [12.6 kB]
Get: 129 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get: 130 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-metadata all 12-4 [6532 B]
Get: 131 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB]
Get: 132 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB]
Get: 133 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 134 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 135 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB]
Get: 136 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB]
Get: 137 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB]
Get: 138 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB]
Get: 139 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 140 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB]
Get: 141 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-1 [204 kB]
Get: 142 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB]
Get: 143 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 144 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB]
Get: 145 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.2-1 [10.3 kB]
Get: 146 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.13.2-1 [1068 B]
Get: 147 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB]
Get: 148 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB]
Get: 149 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get: 150 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get: 151 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get: 152 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB]
Get: 153 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB]
Get: 154 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB]
Get: 155 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB]
Get: 156 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.8.3-7 [2735 kB]
Get: 157 http://deb.debian.org/debian trixie/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB]
Get: 158 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.2-1 [1048 B]
Get: 159 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB]
Get: 160 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.2-1 [26.1 kB]
Get: 161 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.13.2-1 [1068 B]
Get: 162 http://deb.debian.org/debian trixie/main amd64 python3-attr all 25.1.0-1 [68.7 kB]
Get: 163 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.17.0-1 [117 kB]
Get: 164 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB]
Get: 165 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B]
Get: 166 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 167 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB]
Get: 168 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.8-1 [95.2 kB]
Get: 169 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB]
Get: 170 http://deb.debian.org/debian trixie/main amd64 python3-coverage amd64 7.6.0+dfsg1-2+b2 [175 kB]
Get: 171 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B]
Get: 172 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 173 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB]
Get: 174 http://deb.debian.org/debian trixie/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB]
Get: 175 http://deb.debian.org/debian trixie/main amd64 python3-roman all 5.0-1 [10.6 kB]
Get: 176 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB]
Get: 177 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.1-3 [150 kB]
Get: 178 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.1-3 [4004 B]
Get: 179 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB]
Get: 180 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-6 [95.1 kB]
Get: 181 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.3.1-1+b1 [1288 kB]
Get: 182 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.4.0+dfsg-1+b1 [25.5 kB]
Get: 183 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.14.1-4+b1 [17.1 MB]
Get: 184 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB]
Get: 185 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-5 [4148 kB]
Get: 186 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB]
Get: 187 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB]
Get: 188 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.55.3-2+b1 [1448 kB]
Get: 189 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.13.0-1+b1 [1065 kB]
Get: 190 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.13.0-1 [15.0 kB]
Get: 191 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.10-1 [42.0 kB]
Get: 192 http://deb.debian.org/debian trixie/main amd64 python3-imagesize all 1.4.1-1 [6688 B]
Get: 193 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 194 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB]
Get: 195 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.5-2 [107 kB]
Get: 196 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB]
Get: 197 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB]
Get: 198 http://deb.debian.org/debian trixie/main amd64 python3.12-tk amd64 3.12.9-1 [113 kB]
Get: 199 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.2-1 [103 kB]
Get: 200 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.13.1-1+b1 [9760 B]
Get: 201 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB]
Get: 202 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 203 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB]
Get: 204 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.8.3-7+b1 [23.0 MB]
Get: 205 http://deb.debian.org/debian trixie/main amd64 sphinx-common all 8.1.3-5 [617 kB]
Get: 206 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB]
Get: 207 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.3.0-1 [114 kB]
Get: 208 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-4 [72.1 kB]
Get: 209 http://deb.debian.org/debian trixie/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB]
Get: 210 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 8.1.3-5 [468 kB]
Get: 211 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB]
Get: 212 http://deb.debian.org/debian trixie/main amd64 python3-numpydoc all 1.8.0-1 [51.4 kB]
Get: 213 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8+b1 [4517 kB]
Get: 214 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB]
Get: 215 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 216 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.4-1 [250 kB]
Get: 217 http://deb.debian.org/debian trixie/main amd64 python3-pytest-cov all 5.0.0-1 [26.8 kB]
Fetched 149 MB in 8s (19.8 MB/s)
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Unpacking liblocale-gettext-perl (1.07-7+b1) ...
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Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ...
Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ...
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update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
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Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libglib2.0-0t64:amd64 (2.83.4-1) ...
No schema files found: doing nothing.
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Setting up dh-strip-nondeterminism (1.14.1-2) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
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Setting up libcurl4t64:amd64 (8.12.1-3) ...
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update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-lz4 (4.4.0+dfsg-1+b1) ...
Setting up python3-defusedxml (0.7.1-3) ...
Setting up python3-charset-normalizer (3.4.1-1+b1) ...
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Processing triggers for libc-bin (2.40-7) ...
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Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/python-biom-format-2.1.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biom-format_2.1.16-1_source.changes
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.16-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --with bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean -i python{version} -p 3.13
I: pybuild base:311: python3.13 setup.py clean
/build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as TestCommand
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running clean
removing '/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files
rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary --with bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
pybuild --configure -i python{version} -p 3.13
I: pybuild base:311: python3.13 setup.py config
/build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as TestCommand
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build -i python{version} -p 3.13
I: pybuild base:311: /usr/bin/python3 setup.py build
/build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as TestCommand
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
copying biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
copying biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
copying biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
copying biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
copying biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
copying biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests
creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli
creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'biom.assets' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'biom.assets' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'biom.assets' to be distributed and are
already explicitly excluding 'biom.assets' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'biom.tests.bench_tables' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'biom.tests.bench_tables' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'biom.tests.bench_tables' to be distributed and are
already explicitly excluding 'biom.tests.bench_tables' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'biom.tests.test_cli.test_data' to be distributed and are
already explicitly excluding 'biom.tests.test_cli.test_data' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
copying biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
copying biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
copying biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom
creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets
creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables
copying biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data
creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data
running build_ext
building 'biom._filter' extension
creating build/temp.linux-x86_64-cpython-313/biom
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c biom/_filter.c -o build/temp.linux-x86_64-cpython-313/biom/_filter.o
In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913,
from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12,
from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5,
from biom/_filter.c:1249:
/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/biom/_filter.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-x86_64-linux-gnu.so
building 'biom._transform' extension
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c biom/_transform.c -o build/temp.linux-x86_64-cpython-313/biom/_transform.o
In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913,
from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12,
from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5,
from biom/_transform.c:1249:
/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/biom/_transform.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-x86_64-linux-gnu.so
building 'biom._subsample' extension
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c biom/_subsample.c -o build/temp.linux-x86_64-cpython-313/biom/_subsample.o
In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913,
from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12,
from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5,
from biom/_subsample.c:1249:
/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/biom/_subsample.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-x86_64-linux-gnu.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
WARNING: Failed to import biom.table.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
WARNING: Failed to import biom.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 12 source files that are out of date
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 17%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 42%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 67%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 92%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter' [autodoc.import_object]
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter' [autodoc.import_object]
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets...
copying static files...
Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/language_data.js
Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/basic.css
Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/documentation_options.js
Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/haiku.css
copying static files: done
copying extra files...
copying extra files: done
copying assets: done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 17%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 42%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 67%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 92%] documentation/table_objects
writing output... [100%] index
/build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title]
/build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title]
/build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title]
/build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title]
generating indices... done
writing additional pages... search done
copying images... [100%] _static/biom-format.png
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 8 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
WARNING: Failed to import biom.table.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
WARNING: Failed to import biom.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
building [mo]: targets for 0 po files that are out of date
writing output...
building [man]: all manpages
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 17%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 42%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 67%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 92%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter' [autodoc.import_object]
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter' [autodoc.import_object]
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets...
copying assets: done
writing... biom.1 {
documentation/index
documentation/biom_format
documentation/format_versions/biom-1.0
documentation/format_versions/biom-2.0
documentation/format_versions/biom-2.1
documentation/quick_usage_examples
documentation/table_objects
documentation/biom_conversion
documentation/adding_metadata
documentation/summarizing_biom_tables
BIOM_LICENSE
} done
build succeeded, 4 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16'
dh_auto_test -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p 3.13
I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build
I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build; python3.13 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build
configfile: pytest.ini
testpaths: biom
plugins: typeguard-4.4.2, cov-5.0.0
collected 384 items
biom/tests/test_cli/test_add_metadata.py .... [ 1%]
biom/tests/test_cli/test_show_install_info.py . [ 1%]
biom/tests/test_cli/test_subset_table.py ..... [ 2%]
biom/tests/test_cli/test_summarize_table.py .. [ 3%]
biom/tests/test_cli/test_table_converter.py ...... [ 4%]
biom/tests/test_cli/test_table_normalizer.py . [ 4%]
biom/tests/test_cli/test_uc_processor.py ...... [ 6%]
biom/tests/test_cli/test_validate_table.py ....................... [ 12%]
biom/tests/test_err.py ..................... [ 17%]
biom/tests/test_parse.py ........................... [ 25%]
biom/tests/test_table.py ............................................... [ 37%]
..ssss.................................................................. [ 55%]
......sss............................................................... [ 74%]
........................................................................ [ 93%]
..... [ 94%]
biom/tests/test_util.py .................... [100%]
=============================== warnings summary ===============================
biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
biom/tests/test_table.py::TableTests::test_from_hdf5_subset_error
biom/tests/test_table.py::TableTests::test_from_hdf5_subset_error
/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/table.py:4237: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead.
idx = np.in1d(source_ids, desired_ids)
biom/tests/test_table.py::SupportTests::test_remove_empty_both
biom/tests/test_table.py::SupportTests::test_remove_empty_obs
biom/tests/test_table.py::SupportTests::test_remove_empty_sample
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient.
self._set_arrayXarray(i, j, x)
biom/tests/test_table.py::TableTests::test_nnz_issue_727
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:108: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient.
self._set_intXint(row, col, x.flat[0])
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================= 377 passed, 7 skipped, 10 warnings in 29.73s =================
rm -fr -- /tmp/dh-xdg-rundir-RNBWcKfD
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars
rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/
rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16'
dh_auto_install
install -m0755 -d /build/reproducible-path/python-biom-format-2.1.16/debian/tmp
pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/python-biom-format-2.1.16/debian/tmp
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format
/build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as TestCommand
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'biom.assets' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'biom.assets' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'biom.assets' to be distributed and are
already explicitly excluding 'biom.assets' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'biom.tests.bench_tables' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'biom.tests.bench_tables' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'biom.tests.bench_tables' to be distributed and are
already explicitly excluding 'biom.tests.bench_tables' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'biom.tests.test_cli.test_data' to be distributed and are
already explicitly excluding 'biom.tests.test_cli.test_data' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
running build_ext
running install_lib
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/err.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/exception.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/table.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_err.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_parse.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/long_lines.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_util.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_validator.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_head.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_converter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_ids.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/README.md -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache
creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/obs_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/sam_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples
copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/err.py to err.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/table.py to table.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_util.py to test_util.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_parse.py to test_parse.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_table.py to test_table.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/long_lines.py to long_lines.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_err.py to test_err.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/parse.py to parse.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/exception.py to exception.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/util.py to util.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_head.py to table_head.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_validator.py to table_validator.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_converter.py to table_converter.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/util.py to util.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_ids.py to table_ids.cpython-313.pyc
byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-313.pyc
running install_egg_info
Copying biom_format.egg-info to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom_format-2.1.16.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/bin
I: pybuild pybuild:334: dh_numpy3
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
find debian/python3-biom-format -name .coverage -delete
make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16'
rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log
debian/rules override_dh_installdocs-indep
make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16'
dh_installdocs --indep
dh_installdocs: warning: Cannot auto-detect main package for python-biom-format-doc. If the default is wrong, please use --doc-main-package
install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc
install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc
cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/python-biom-format-2.1.16/debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc
chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc
install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright
install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/
install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format
dh_sphinxdoc --indep
ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js
ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js
dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js
ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js
ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js
rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16'
dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc
install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format
install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format
cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format
cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format
chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc
install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright
dh_sphinxdoc -O--buildsystem=pybuild
dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js
dh_installchangelogs -O--buildsystem=pybuild
install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format
install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog
install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc
install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog
rm -f debian/python-biom-format-doc.debhelper.log
debian/rules override_dh_installexamples
make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16'
dh_installexamples
install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5_group_metadata.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
find debian -name "*.c" -delete
find debian -name "*.pyx" -delete
# move tests from Python3 package to examples package
if [ ! -d biom/tests ] ; then \
mv `find debian/python*biom-format -name tests -type d` biom ; \
else \
find debian/python*biom-format -name tests -type d | xargs rm -rf ; \
fi
make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16'
dh_installman -O--buildsystem=pybuild
install -m0755 -d debian/python3-biom-format/usr/share/man/man1/
install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1
man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1
dh_python3 -O--buildsystem=pybuild
D: dh_python3 dh_python3:180: version: 6.20250108
D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild'])
D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13)
D: dh_python3 debhelper:166: skipping package python-biom-format-doc (missing ${python3:Depends} in Depends/Recommends)
D: dh_python3 debhelper:174: source=python-biom-format, binary packages=['python3-biom-format']
D: dh_python3 dh_python3:205: processing package python3-biom-format...
D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.13/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/
D: dh_python3 fs:249: removing dist-packages/.pytest_cache
D: dh_python3 fs:338: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/requires.txt'}, 'egg-info': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()}
D: dh_python3 depends:103: generating dependencies for package python3-biom-format
D: dh_python3 pydist:175: trying to find dependency for click (python=None)
D: dh_python3 pydist:209: dependency: module seems to be installed
D: dh_python3 pydist:284: dependency: included in build-deps
D: dh_python3 pydist:175: trying to find dependency for h5py (python=None)
D: dh_python3 pydist:209: dependency: module seems to be installed
D: dh_python3 pydist:284: dependency: included in build-deps
D: dh_python3 pydist:175: trying to find dependency for numpy>=1.9.2 (python=None)
D: dh_python3 pydist:209: dependency: module seems to be installed
D: dh_python3 pydist:284: dependency: included in build-deps
D: dh_python3 pydist:175: trying to find dependency for pandas>=0.20.0 (python=None)
D: dh_python3 pydist:209: dependency: module seems to be installed
D: dh_python3 pydist:284: dependency: included in build-deps
D: dh_python3 pydist:175: trying to find dependency for scipy>=1.3.1 (python=None)
D: dh_python3 pydist:209: dependency: module seems to be installed
D: dh_python3 pydist:284: dependency: included in build-deps
D: dh_python3 depends:253: D={'python3-click', 'python3-h5py', 'python3 (<< 3.14)', 'python3 (>= 3.13~)', 'python3:any', 'python3-numpy', 'python3-pandas', 'python3-scipy'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js
ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js
ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js
ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js
ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js
dh_strip_nondeterminism -O--buildsystem=pybuild
Using 1716835050 as canonical time
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png
dh_compress -O--buildsystem=pybuild
cd debian/python3-biom-format
cd debian/python-biom-format-doc
chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian
gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian
cd '/build/reproducible-path/python-biom-format-2.1.16'
cd '/build/reproducible-path/python-biom-format-2.1.16'
rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log
debian/rules override_dh_fixperms
make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16'
dh_fixperms
find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian -name exercise_cli.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16'
dh_missing -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu
dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-x86_64-linux-gnu.so
objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug
chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug
dh_strip -a -O--buildsystem=pybuild
install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a9
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a9/020834119af2764a4bb08c6ba7fa20e977ea22.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a9/020834119af2764a4bb08c6ba7fa20e977ea22.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-x86_64-linux-gnu.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a9/020834119af2764a4bb08c6ba7fa20e977ea22.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-x86_64-linux-gnu.so
install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/de
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/de/50921fe987ae503284e8839fc862bdd50bdcec.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/de/50921fe987ae503284e8839fc862bdd50bdcec.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-x86_64-linux-gnu.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/de/50921fe987ae503284e8839fc862bdd50bdcec.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-x86_64-linux-gnu.so
install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/de
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/de/6af18c072225f5270ee681bf39f5ad1da84565.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/de/6af18c072225f5270ee681bf39f5ad1da84565.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-x86_64-linux-gnu.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/de/6af18c072225f5270ee681bf39f5ad1da84565.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-x86_64-linux-gnu.so
install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python3-biom-format/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug
install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc
ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym
install -m0755 -d debian/.debhelper/python3-biom-format
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-biom-format/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-biom-format/DEBIAN
dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-x86_64-linux-gnu.so
dh_installdeb -O--buildsystem=pybuild
install -m0755 -d debian/python3-biom-format/DEBIAN
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst
cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst
chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm
cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm
chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm
install -m0755 -d debian/python-biom-format-doc/DEBIAN
dh_gencontrol -O--buildsystem=pybuild
install -m0755 -d debian/python-biom-format-doc/DEBIAN
echo misc:Depends= >> debian/python-biom-format-doc.substvars
echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars
dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -cdebian/control -Pdebian/python-biom-format-doc
install -m0755 -d debian/python3-biom-format/DEBIAN
echo misc:Depends= >> debian/python3-biom-format.substvars
echo misc:Pre-Depends= >> debian/python3-biom-format.substvars
install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=a9020834119af2764a4bb08c6ba7fa20e977ea22 de50921fe987ae503284e8839fc862bdd50bdcec de6af18c072225f5270ee681bf39f5ad1da84565" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined
chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/python3-biom-format
chmod 0644 -- debian/python3-biom-format/DEBIAN/control
dh_md5sums -O--buildsystem=pybuild
install -m0755 -d debian/python3-biom-format/DEBIAN
install -m0755 -d debian/python-biom-format-doc/DEBIAN
cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN
chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums
cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
dh_builddeb -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root ..
dpkg-deb --root-owner-group --build debian/python3-biom-format ..
dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.16-1_amd64.deb'.
dpkg-deb --root-owner-group --build debian/python-biom-format-doc ..
dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.16-1_all.deb'.
dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.16-1_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.16-1_amd64.buildinfo
dpkg-genchanges --build=binary -O../python-biom-format_2.1.16-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2960820 and its subdirectories
I: Current time: Sun Mar 2 20:06:48 -12 2025
I: pbuilder-time-stamp: 1740989208
Mon Mar 3 08:06:50 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Mon Mar 3 08:06:50 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Mon Mar 3 08:09:08 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Mon Mar 3 08:09:09 UTC 2025 I: python-biom-format_2.1.16-1_amd64.changes:
Format: 1.8
Date: Mon, 27 May 2024 20:37:30 +0200
Source: python-biom-format
Binary: python-biom-format-doc python3-biom-format python3-biom-format-dbgsym
Architecture: all amd64
Version: 2.1.16-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
python-biom-format-doc - documentation for BIOM format
python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3)
Changes:
python-biom-format (2.1.16-1) unstable; urgency=medium
.
* New upstream version 2.1.16
* fix_future_import.patch: unfuzz.
* ignore_local_dist-packages.patch: unfuzz.
* adjust-pd-df-interaction-with-greater-than.patch.
Patch deleted, as it was applied upstream.
* d/copyright: account for upstream move to Revised BSD.
* d/control: declare compliance to standards version 4.7.0.
* d/{copyright,watch}: no dfsg repack needed anymore.
Upstream repository has been clean of excluded artifacts since 2.1.9.
* d/python-biom-format-doc.lintian-overrides: delete.
The false positive previously documented does not show up anymore.
Checksums-Sha1:
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242008d32fa574333fe71c62313fa4702bf83858 11268 python-biom-format_2.1.16-1_amd64.buildinfo
08e7d57240b7709442dc2e33e01cb578d28fdca4 389428 python3-biom-format-dbgsym_2.1.16-1_amd64.deb
772ce80f51260e18003ff7f65287d66acc7a1999 150912 python3-biom-format_2.1.16-1_amd64.deb
Checksums-Sha256:
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8cfaec2ebc6cea13c502218c1ab7c9d6ae5339302da20da66053200434aaf34b 11268 python-biom-format_2.1.16-1_amd64.buildinfo
cd135dd219fe54c44aebb3afc6c489ff1ef4a5c6d12a299d8bce237b48ee7b0d 389428 python3-biom-format-dbgsym_2.1.16-1_amd64.deb
4a4ee653226f5707aacefe2ab3c880f6e06df27ebde690bf4f8c39caa0de66e1 150912 python3-biom-format_2.1.16-1_amd64.deb
Files:
43b52c9f0afa2a95864a2a1aa30feb67 67184 doc optional python-biom-format-doc_2.1.16-1_all.deb
b26e473df9df36b67e9e1676d8137bb0 11268 python optional python-biom-format_2.1.16-1_amd64.buildinfo
769632a753c86ebc3d109a9e33f92fba 389428 debug optional python3-biom-format-dbgsym_2.1.16-1_amd64.deb
2c56ffd25787149e53b4733a022f5ef7 150912 python optional python3-biom-format_2.1.16-1_amd64.deb
Mon Mar 3 08:09:10 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_17-31761.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.goduWQJj/python-biom-format_2.1.16-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.goduWQJj/python-biom-format_2.1.16-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.goduWQJj/python-biom-format_2.1.16-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.goduWQJj/b1/python-biom-format_2.1.16-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.goduWQJj/b2/python-biom-format_2.1.16-1_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 228ms
CPU time consumed: 228ms
Mon Mar 3 08:09:10 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Mon Mar 3 08:09:10 UTC 2025 I: python-biom-format from trixie built successfully and reproducibly on amd64.
Mon Mar 3 08:09:12 UTC 2025 I: Submitting .buildinfo files to external archives:
Mon Mar 3 08:09:12 UTC 2025 I: Submitting 12K b1/python-biom-format_2.1.16-1_amd64.buildinfo.asc
Mon Mar 3 08:09:12 UTC 2025 I: Submitting 12K b2/python-biom-format_2.1.16-1_amd64.buildinfo.asc
Mon Mar 3 08:09:13 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon Mar 3 08:09:13 UTC 2025 I: Done submitting .buildinfo files.
Mon Mar 3 08:09:13 UTC 2025 I: Removing signed python-biom-format_2.1.16-1_amd64.buildinfo.asc files:
removed './b1/python-biom-format_2.1.16-1_amd64.buildinfo.asc'
removed './b2/python-biom-format_2.1.16-1_amd64.buildinfo.asc'