Sat Feb 1 18:40:38 UTC 2025 I: starting to build python-nanoget/trixie/amd64 on jenkins on '2025-02-01 18:40' Sat Feb 1 18:40:38 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/29919/console.log Sat Feb 1 18:40:38 UTC 2025 I: Downloading source for trixie/python-nanoget=1.19.3-1 --2025-02-01 18:40:39-- http://deb.debian.org/debian/pool/main/p/python-nanoget/python-nanoget_1.19.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1637 (1.6K) [text/prs.lines.tag] Saving to: ‘python-nanoget_1.19.3-1.dsc’ 0K . 100% 300M=0s 2025-02-01 18:40:39 (300 MB/s) - ‘python-nanoget_1.19.3-1.dsc’ saved [1637/1637] Sat Feb 1 18:40:39 UTC 2025 I: python-nanoget_1.19.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-nanoget Binary: python3-nanoget, python3-nanoget-examples Architecture: all Version: 1.19.3-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/wdecoster/nanoget Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-nanoget Vcs-Git: https://salsa.debian.org/med-team/python-nanoget.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-biopython, python3-nanomath, python3-pysam Package-List: python3-nanoget deb python optional arch=all python3-nanoget-examples deb python optional arch=all Checksums-Sha1: eb1f1b46b763383b3a22e5bcf66ac7b5124d53c3 21484 python-nanoget_1.19.3.orig.tar.xz db5bb4624c45666f726a4dda838b9169f3ff72bd 26175284 python-nanoget_1.19.3-1.debian.tar.xz Checksums-Sha256: dee4abd2e9b6fd4b22dc67f2c0caed0a54ad9da9c3b309bd33cb346e282f5cbb 21484 python-nanoget_1.19.3.orig.tar.xz 2422855cb85984eef2dd47f79d45345bd7190172de70828b13840af912bd7ef3 26175284 python-nanoget_1.19.3-1.debian.tar.xz Files: a8219da5acd9f52299ede2d0f2c3cf9f 21484 python-nanoget_1.19.3.orig.tar.xz 5e982829420018137ffdbae78a757f88 26175284 python-nanoget_1.19.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZb99pQAKCRAqJ5BL1yQ+ 2kiCAP9z+tu08NaaeAKmROzBqNsOzVQP7AMunaGmweg7qrtXCQD/TswPzBvxviqD gMU8fWbx6oVzRv3MRCUf6+6XsfMJ6AA= =PFem -----END PGP SIGNATURE----- Sat Feb 1 18:40:39 UTC 2025 I: Checking whether the package is not for us Sat Feb 1 18:40:39 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sat Feb 1 18:40:39 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sat Feb 1 18:46:09 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 1 06:40:42 -12 2025 I: pbuilder-time-stamp: 1738435242 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-nanoget_1.19.3-1.dsc] I: copying [./python-nanoget_1.19.3.orig.tar.xz] I: copying [./python-nanoget_1.19.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-nanoget_1.19.3-1.dsc: unsupported subcommand dpkg-source: info: extracting python-nanoget in python-nanoget-1.19.3 dpkg-source: info: unpacking python-nanoget_1.19.3.orig.tar.xz dpkg-source: info: unpacking python-nanoget_1.19.3-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3254157/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d54916a6b65d4aca886d35941e02ab8f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3254157' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Wvgju3AL/pbuilderrc_s5br --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Wvgju3AL/b1 --logfile b1/build.log python-nanoget_1.19.3-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3254157/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-biopython, python3-nanomath, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-nanomath; however: Package python3-nanomath is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtasn1-6{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-dateutil{a} python3-deprecated{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-nanomath{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pysam{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-wrapt{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-scipy python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded. Need to get 81.1 MB of archives. After unpacking 352 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-2 [539 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-3 [280 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 68 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 90 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.1-1+b1 [360 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.4-2 [1502 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1.1 [522 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 130 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b2 [1651 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 python3-wrapt amd64 1.15.0-4 [43.5 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 python3-deprecated all 1.2.18-1 [14.8 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.2-1 [31.0 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 python3-nanomath all 1.2.1+ds-1 [8120 B] Get: 141 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.22.1+ds-2+b2 [4412 kB] Fetched 81.1 MB in 10s (7728 kB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_amd64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 1 18:42:46 UTC 2025. Universal Time is now: Sat Feb 1 18:42:46 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-3) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b4) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:amd64 (2.82.4-2) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.2.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up python3-tz (2024.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-wrapt (1.15.0-4) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-deprecated (1.2.18-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (10.4.0-1.1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-nanomath (1.2.1+ds-1) ... Setting up python3-reportlab (4.2.5-1) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-pysam (0.22.1+ds-2+b2) ... Setting up python3-setuptools (75.6.0-1) ... Setting up dh-python (6.20250108) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-nanoget-1.19.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-nanoget_1.19.3-1_source.changes dpkg-buildpackage: info: source package python-nanoget dpkg-buildpackage: info: source version 1.19.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget copying nanoget/__init__.py -> /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget copying nanoget/nanoget.py -> /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget copying nanoget/extraction_functions.py -> /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget copying nanoget/version.py -> /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget copying nanoget/utils.py -> /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget creating /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/scripts copying scripts/test.py -> /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/scripts copying scripts/create_feather.py -> /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/scripts dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/__init__.py -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/nanoget.py -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/extraction_functions.py -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget creating /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/__pycache__ copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/__pycache__ copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/__pycache__/extraction_functions.cpython-313.pyc -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/__pycache__ copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/__pycache__ copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/__pycache__/nanoget.cpython-313.pyc -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/__pycache__ copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/__pycache__ copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/version.py -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/nanoget/utils.py -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget creating /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/scripts/test.py -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/python-nanoget-1.19.3/.pybuild/cpython3_3.13_nanoget/build/scripts/create_feather.py -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/scripts byte-compiling /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/nanoget.py to nanoget.cpython-313.pyc byte-compiling /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/extraction_functions.py to extraction_functions.cpython-313.pyc byte-compiling /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/scripts/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/scripts/create_feather.py to create_feather.cpython-313.pyc running install_data copying LICENSE -> /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/. running install_egg_info running egg_info creating nanoget.egg-info writing nanoget.egg-info/PKG-INFO writing dependency_links to nanoget.egg-info/dependency_links.txt writing requirements to nanoget.egg-info/requires.txt writing top-level names to nanoget.egg-info/top_level.txt writing manifest file 'nanoget.egg-info/SOURCES.txt' reading manifest file 'nanoget.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'nanoget.egg-info/SOURCES.txt' Copying nanoget.egg-info to /build/reproducible-path/python-nanoget-1.19.3/debian/python3-nanoget/usr/lib/python3.13/dist-packages/nanoget-1.19.3.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/python-nanoget-1.19.3' dh_installexamples mv `find debian/python3-nanoget -name test.py` debian/python3-nanoget-examples/usr/share/doc/python3-nanoget/examples find debian -name __pycache__ -type d | xargs rm -rf find debian -name scripts -type d | xargs rm -rf find debian -name LICENSE -type f -delete make[1]: Leaving directory '/build/reproducible-path/python-nanoget-1.19.3' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-nanoget-examples' in '../python3-nanoget-examples_1.19.3-1_all.deb'. dpkg-deb: building package 'python3-nanoget' in '../python3-nanoget_1.19.3-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-nanoget_1.19.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-nanoget_1.19.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3254157 and its subdirectories I: Current time: Sat Feb 1 06:46:08 -12 2025 I: pbuilder-time-stamp: 1738435568 Sat Feb 1 18:46:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sat Feb 1 18:46:13 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sat Feb 1 18:48:37 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sat Feb 1 18:48:37 UTC 2025 I: python-nanoget_1.19.3-1_amd64.changes: Format: 1.8 Date: Sun, 04 Feb 2024 12:05:21 +0000 Source: python-nanoget Binary: python3-nanoget python3-nanoget-examples Architecture: all Version: 1.19.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-nanoget - extract information from Oxford Nanopore sequencing data and alig python3-nanoget-examples - example data for python3-nanoget (dealing with Oxford Nanopore da Closes: 1044056 Changes: python-nanoget (1.19.3-1) unstable; urgency=medium . [ Andreas Tille ] * Team Upload. * New upstream version (Closes: #1044056) * Standards-Version: 4.6.2 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) . [ Nilesh Patra ] * Update missing source from nanotest repo * Add missing-sources copyright * gunzip mixed test suite file * Versioned depends on pandas Checksums-Sha1: 32c10006fcb7cbf14245bfd4b3a97c43075a803f 8641 python-nanoget_1.19.3-1_amd64.buildinfo 5bb1d9216e7584744377de57d25f6cba2e9956a9 26183880 python3-nanoget-examples_1.19.3-1_all.deb 5d0dbd879e2e90cd49fbb9690d6a2c8c371c31ed 11728 python3-nanoget_1.19.3-1_all.deb Checksums-Sha256: af3e2ee32b4e731943d2b271bc0960e788cfeff9c94509d5a1bff80ab178ed9c 8641 python-nanoget_1.19.3-1_amd64.buildinfo f8f43748cc64727f98320f9a0ac76516cef1f664ac04e75133c16a7f5d2c0918 26183880 python3-nanoget-examples_1.19.3-1_all.deb 59b9ccd309265ed5299b8b58dd858b18525587241f882cc6eaa14a2e8e91ac21 11728 python3-nanoget_1.19.3-1_all.deb Files: 599351d2cad2ceea377c8affb3e3e9e1 8641 science optional python-nanoget_1.19.3-1_amd64.buildinfo 5d9f64fbd55fd5e39d90c0b3bf091d66 26183880 python optional python3-nanoget-examples_1.19.3-1_all.deb 5aa625fd7435eac0540babf4a1aaca81 11728 python optional python3-nanoget_1.19.3-1_all.deb Sat Feb 1 18:48:38 UTC 2025 I: diffoscope 286 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_5-29919.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Wvgju3AL/python-nanoget_1.19.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Wvgju3AL/python-nanoget_1.19.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Wvgju3AL/python-nanoget_1.19.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Wvgju3AL/b1/python-nanoget_1.19.3-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Wvgju3AL/b2/python-nanoget_1.19.3-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 259ms CPU time consumed: 258ms Sat Feb 1 18:48:39 UTC 2025 I: diffoscope 286 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 1 18:48:39 UTC 2025 I: python-nanoget from trixie built successfully and reproducibly on amd64. Sat Feb 1 18:48:40 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 1 18:48:40 UTC 2025 I: Submitting 12K b1/python-nanoget_1.19.3-1_amd64.buildinfo.asc Sat Feb 1 18:48:41 UTC 2025 I: Submitting 12K b2/python-nanoget_1.19.3-1_amd64.buildinfo.asc Sat Feb 1 18:48:42 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 1 18:48:42 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 1 18:48:42 UTC 2025 I: Removing signed python-nanoget_1.19.3-1_amd64.buildinfo.asc files: removed './b1/python-nanoget_1.19.3-1_amd64.buildinfo.asc' removed './b2/python-nanoget_1.19.3-1_amd64.buildinfo.asc'