Tue Mar 4 15:39:12 UTC 2025 I: starting to build python-pyani/trixie/amd64 on jenkins on '2025-03-04 15:38' Tue Mar 4 15:39:12 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_26/33456/console.log Tue Mar 4 15:39:12 UTC 2025 I: Downloading source for trixie/python-pyani=0.2.12-3 --2025-03-04 15:39:12-- http://deb.debian.org/debian/pool/main/p/python-pyani/python-pyani_0.2.12-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2404 (2.3K) [text/prs.lines.tag] Saving to: ‘python-pyani_0.2.12-3.dsc’ 0K .. 100% 270M=0s 2025-03-04 15:39:12 (270 MB/s) - ‘python-pyani_0.2.12-3.dsc’ saved [2404/2404] Tue Mar 4 15:39:12 UTC 2025 I: python-pyani_0.2.12-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyani Binary: python3-pyani Architecture: any Version: 0.2.12-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/widdowquinn/pyani Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pyani Vcs-Git: https://salsa.debian.org/med-team/python-pyani.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython , python3-matplotlib , python3-pandas , python3-scipy , python3-seaborn , mummer , ncbi-blast+ , python3-pytest Package-List: python3-pyani deb python optional arch=any Checksums-Sha1: 5a3411c6f6c3fbc237492c0d756f19b1a6ea4589 49038533 python-pyani_0.2.12.orig.tar.gz 60d43d56d1f100769c150f7b8c87e11e6c92add9 11404 python-pyani_0.2.12-3.debian.tar.xz Checksums-Sha256: 31bac50843d3af54cf273a4388f4f87bffb0688082e4e3179ea1640aa208626d 49038533 python-pyani_0.2.12.orig.tar.gz 811e72aaf7f67bc5f2c6d5538f527ad610ffab339278526ff33cae6826100ea6 11404 python-pyani_0.2.12-3.debian.tar.xz Files: be120c6027f0fb7e14bbefeff7cb9abb 49038533 python-pyani_0.2.12.orig.tar.gz d629542deb83329b306d5d71bdcf7805 11404 python-pyani_0.2.12-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVhBpURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHF/w//YPO8mJUlMjl5j9etCPFv1LFe+v7Z1dZU cWw5oq3j380r9kwJPM5PLuWjXWYVeew2ky46KYi65hjjOUHc3IEo/nfBOjfBAR5G 07ozcQSxJ53ymG6s691QYKz6eL6HtMuSZFqJdRHS/x8/fI9pymQpnLzP6SWNK0xe tKV/6khTAeyxzwMdSRHMGuN9mRPJ3LPhkYhWoPpZ/P+qbE+wOBFENGorpyF04qaN fJ6QdhNzrAr6gkOPo0sqRA8fS5n37364pf15leBzGXs91QATsIEJC3WEymf8g4LV ntUeaas816ex0cfFEU2sOFf2m7IIPJl1ExbPkHF2lvk1USudHwpPeBP3cSHYKMqi PSx11nRB7ksy9eGIbFRnVnXcrqayKctjiZCmFxqCNEPa5Mm4h0PgtKPVZ5EZfw4V NxS/Sm96ECSeZxkvMWDVMPAeiHJE8R+xzZqVSqetOode0On20dzoelw19OmdWWnP OfzeRL50mM62w8pFnTHgxtGHoS/gv8bclRf67ZhPHPziBa6idgSg3P1a4Ax/Lrpa mnnMZCaoWk+nvwkdu2BU0orv5DUMaYtJ4yT+5IbOzmtnfa8+Gt7Lknn3ryYhDXXD 2JRKzITGjlcNWpOd3BGfSfbjbMAJXuhP+MtLNeoMhybg9grQbSKuLP1R2uvTVCH7 e30pLfbRf04= =DsHD -----END PGP SIGNATURE----- Tue Mar 4 15:39:12 UTC 2025 I: Checking whether the package is not for us Tue Mar 4 15:39:12 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Mar 4 15:39:12 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Mar 4 15:44:22 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 6 10:02:14 -12 2026 I: pbuilder-time-stamp: 1775512934 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyani_0.2.12-3.dsc] I: copying [./python-pyani_0.2.12.orig.tar.gz] I: copying [./python-pyani_0.2.12-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.12-3.dsc: unsupported subcommand dpkg-source: info: extracting python-pyani in python-pyani-0.2.12 dpkg-source: info: unpacking python-pyani_0.2.12.orig.tar.gz dpkg-source: info: unpacking python-pyani_0.2.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pytest.patch dpkg-source: info: applying dataframe_sort.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/943698/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='859899325cde4e888b01b191383d5523' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='943698' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hnqJIhwX/pbuilderrc_WoUz --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hnqJIhwX/b1 --logfile b1/build.log python-pyani_0.2.12-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/943698/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsigsegv2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} mummer{a} ncbi-blast+{a} ncbi-data{a} netbase{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-pytz{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl lynx python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 181 newly installed, 0 to remove and 0 not upgraded. Need to get 165 MB of archives. After unpacking 647 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libsigsegv2 amd64 2.14-1+b2 [34.4 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 gawk amd64 1:5.2.1-2+b1 [674 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-1 [27.1 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 media-types all 12.0.0 [28.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-1 [10.0 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-1 [28.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-2+b1 [138 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:2.2.3+ds-2+b1 [5081 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.47-1 [282 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 49 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 69 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.83.4-1 [1512 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-1 [204 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.2-1 [10.3 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.13.2-1 [1068 B] Get: 124 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Get: 136 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.8.3-7 [2735 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.2-1 [1048 B] Get: 138 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.2-1 [26.1 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.13.2-1 [1068 B] Get: 141 http://deb.debian.org/debian trixie/main amd64 python3-attr all 25.1.0-1 [68.7 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 python3.12-tk amd64 3.12.9-1 [113 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.2-1 [103 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.13.1-1+b1 [9760 B] Get: 146 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b2 [114 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 151 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.85+dfsg-2+b1 [1672 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 158 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.1-3 [150 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.1-3 [4004 B] Get: 162 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-6 [95.1 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.3.1-1+b1 [1288 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.4.0+dfsg-1+b1 [25.5 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.14.1-4+b1 [17.1 MB] Get: 167 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.55.3-2+b1 [1448 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 173 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.8.3-7+b1 [23.0 MB] Get: 177 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8+b1 [4517 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 python3-seaborn all 0.13.2-4.1 [215 kB] Fetched 165 MB in 13s (12.8 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.14-1+b2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.14-1+b2) ... Setting up readline-common (8.2-6) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libsigsegv2:amd64 (2.14-1+b2) ... Selecting previously unselected package gawk. (Reading database ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyani-0.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyani_0.2.12-3_source.changes dpkg-buildpackage: info: source package python-pyani dpkg-buildpackage: info: source version 0.2.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pyani-0.2.12' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running clean removing '/build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt make[1]: Leaving directory '/build/reproducible-path/python-pyani-0.2.12' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running build running build_py creating /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_config.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_files.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_graphics.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_jobs.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_tools.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/run_sge.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/__init__.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/tetra.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/run_multiprocessing.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/anim.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/anib.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani running egg_info creating pyani.egg-info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt writing manifest file 'pyani.egg-info/SOURCES.txt' reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.13 copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.13 copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.13 changing mode of build/scripts-3.13/average_nucleotide_identity.py from 644 to 755 changing mode of build/scripts-3.13/genbank_get_genomes_by_taxon.py from 644 to 755 changing mode of build/scripts-3.13/delta_filter_wrapper.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyani-0.2.12 plugins: typeguard-4.4.2 collected 56 items tests/test_anib.py sss.....sss...ss [ 28%] tests/test_anim.py ...... [ 39%] tests/test_concordance.py .s.. [ 46%] tests/test_dependencies.py ......s. [ 60%] tests/test_graphics.py ...... [ 71%] tests/test_jobs.py ......... [ 87%] tests/test_multiprocessing.py ... [ 92%] tests/test_parsing.py . [ 94%] tests/test_tetra.py ... [100%] =============================== warnings summary =============================== pyani/pyani_graphics.py:70 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:70: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_SPBND_BURD) pyani/pyani_graphics.py:71 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:71: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_HADAMARD_BURD) pyani/pyani_graphics.py:72 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:72: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_BURD) .pybuild/cpython3_3.13_pyani/build/tests/test_anib.py::TestParsing::test_blastdir_processing .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy results.alignment_lengths[org][org] = length .pybuild/cpython3_3.13_pyani/build/tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy results.alignment_lengths[org][org] = length .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = 1.0 .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = float(val) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = 100.0 .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy correlations[org2][org1] = correlations[org1][org2] -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 46 passed, 10 skipped, 31 warnings in 140.27s (0:02:20) ============ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pyani/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_config.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_files.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_jobs.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_tools.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/run_sge.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__init__.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/run_multiprocessing.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anim.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anib.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_jobs.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/anib.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/anim.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_graphics.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/tetra.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_config.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_tools.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_files.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_config.py to pyani_config.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_files.py to pyani_files.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/run_sge.py to run_sge.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/tetra.py to tetra.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/anim.py to anim.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/anib.py to anib.cpython-313.pyc running install_egg_info Copying pyani.egg-info to /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani-0.2.12.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/delta_filter_wrapper.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/average_nucleotide_identity.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/genbank_get_genomes_by_taxon.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755 changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755 changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pyani-0.2.12' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/python-pyani-0.2.12' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyani' in '../python3-pyani_0.2.12-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-pyani_0.2.12-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pyani_0.2.12-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/943698 and its subdirectories I: Current time: Mon Apr 6 10:07:21 -12 2026 I: pbuilder-time-stamp: 1775513241 Tue Mar 4 15:44:23 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Tue Mar 4 15:44:23 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Tue Mar 4 16:17:00 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Tue Mar 4 16:17:01 UTC 2025 I: python-pyani_0.2.12-3_amd64.changes: Format: 1.8 Date: Fri, 24 Nov 2023 22:32:48 +0530 Source: python-pyani Binary: python3-pyani Architecture: amd64 Version: 0.2.12-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Ananthu C V Description: python3-pyani - Python3 module for average nucleotide identity analyses Closes: 1044066 Changes: python-pyani (0.2.12-3) unstable; urgency=medium . [ Ananthu C V ] * Team upload * add patch to fix dataframe sorting syntax (Closes: #1044066) . [ Andreas Tille ] * Standards-Version: 4.6.2 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: 38b32399f2483df729646f700d0de1e4921633ed 9330 python-pyani_0.2.12-3_amd64.buildinfo 34016b5ca5fab6a8108f4f257a3ffb54589a3e37 48348 python3-pyani_0.2.12-3_amd64.deb Checksums-Sha256: e3bb24e9f51f9ec60e276317e13d9e397ac2b3283d08427c810f68761a8c9623 9330 python-pyani_0.2.12-3_amd64.buildinfo 5d94d36719d0af5ed5665f764f604a80f7061c5f7ce294825a037937f545ad4e 48348 python3-pyani_0.2.12-3_amd64.deb Files: 97f06834d102173196a18e701faddee4 9330 science optional python-pyani_0.2.12-3_amd64.buildinfo dc34ec5062b7359e30e2d19385bc2295 48348 python optional python3-pyani_0.2.12-3_amd64.deb Tue Mar 4 16:17:02 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_26-33456.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.hnqJIhwX/python-pyani_0.2.12-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.hnqJIhwX/python-pyani_0.2.12-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.hnqJIhwX/python-pyani_0.2.12-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.hnqJIhwX/b1/python-pyani_0.2.12-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.hnqJIhwX/b2/python-pyani_0.2.12-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 304ms CPU time consumed: 296ms Tue Mar 4 16:17:03 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Tue Mar 4 16:17:03 UTC 2025 I: python-pyani from trixie built successfully and reproducibly on amd64. Tue Mar 4 16:17:04 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Mar 4 16:17:04 UTC 2025 I: Submitting 12K b1/python-pyani_0.2.12-3_amd64.buildinfo.asc Tue Mar 4 16:17:05 UTC 2025 I: Submitting 12K b2/python-pyani_0.2.12-3_amd64.buildinfo.asc Tue Mar 4 16:17:06 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Mar 4 16:17:06 UTC 2025 I: Done submitting .buildinfo files. Tue Mar 4 16:17:06 UTC 2025 I: Removing signed python-pyani_0.2.12-3_amd64.buildinfo.asc files: removed './b1/python-pyani_0.2.12-3_amd64.buildinfo.asc' removed './b2/python-pyani_0.2.12-3_amd64.buildinfo.asc'