Wed Feb 19 20:00:32 UTC 2025  I: starting to build resfinder/trixie/amd64 on jenkins on '2025-02-19 20:00'
Wed Feb 19 20:00:32 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/33384/console.log
Wed Feb 19 20:00:32 UTC 2025  I: Downloading source for trixie/resfinder=4.4.2-2
--2025-02-19 20:00:33--  http://deb.debian.org/debian/pool/main/r/resfinder/resfinder_4.4.2-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2148 (2.1K) [text/prs.lines.tag]
Saving to: ‘resfinder_4.4.2-2.dsc’

     0K ..                                                    100% 14.2M=0s

2025-02-19 20:00:33 (14.2 MB/s) - ‘resfinder_4.4.2-2.dsc’ saved [2148/2148]

Wed Feb 19 20:00:33 UTC 2025  I: resfinder_4.4.2-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: resfinder
Binary: resfinder, resfinder-example
Architecture: all
Version: 4.4.2-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://bitbucket.org/genomicepidemiology/resfinder
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/resfinder
Vcs-Git: https://salsa.debian.org/med-team/resfinder.git
Testsuite: autopkgtest
Testsuite-Triggers: resfinder-db
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3, python3-cgelib, python3-pdm-backend
Package-List:
 resfinder deb science optional arch=all
 resfinder-example deb science optional arch=all
Checksums-Sha1:
 4ded8b00e252189c738c3f021ad65995c480409a 89052 resfinder_4.4.2.orig-debian-tests-data.tar.xz
 1dca572e57826d2acfb7da9a3036771d7e7c7f7f 359460 resfinder_4.4.2.orig.tar.xz
 0703daec06aa939fd01a1d3ad394d68d5d898eb3 8744 resfinder_4.4.2-2.debian.tar.xz
Checksums-Sha256:
 3ef38a2a7361e887e9d1f8037f90154242f7b7801b2a0beb4410fba9fb0d8831 89052 resfinder_4.4.2.orig-debian-tests-data.tar.xz
 b1481247fb9c2ec50cae9995f6a448028c40ea26619a5aab84155d6c6569ae19 359460 resfinder_4.4.2.orig.tar.xz
 40e3d82425b5431bb036d40794a6b17a8ff2af4c765767b7cb98a29c170a9928 8744 resfinder_4.4.2-2.debian.tar.xz
Files:
 c65eabcad59f985e94f95e50b7c93971 89052 resfinder_4.4.2.orig-debian-tests-data.tar.xz
 740cf166b9715268e7e49a9dc572ba03 359460 resfinder_4.4.2.orig.tar.xz
 c728af24d7b6b75088284150ce773f1b 8744 resfinder_4.4.2-2.debian.tar.xz
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Wed Feb 19 20:00:33 UTC 2025  I: Checking whether the package is not for us
Wed Feb 19 20:00:33 UTC 2025  I: Starting 1st build on remote node ionos11-amd64.debian.net.
Wed Feb 19 20:00:33 UTC 2025  I: Preparing to do remote build '1' on ionos11-amd64.debian.net.
Wed Feb 19 20:05:00 UTC 2025  I: Deleting $TMPDIR on ionos11-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Feb 19 08:00:35 -12 2025
I: pbuilder-time-stamp: 1739995235
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [resfinder_4.4.2-2.dsc]
I: copying [./resfinder_4.4.2.orig-debian-tests-data.tar.xz]
I: copying [./resfinder_4.4.2.orig.tar.xz]
I: copying [./resfinder_4.4.2-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./resfinder_4.4.2-2.dsc: unsupported subcommand
dpkg-source: info: extracting resfinder in resfinder-4.4.2
dpkg-source: info: unpacking resfinder_4.4.2.orig.tar.xz
dpkg-source: info: unpacking resfinder_4.4.2.orig-debian-tests-data.tar.xz
dpkg-source: info: unpacking resfinder_4.4.2-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_path_in_testscript.patch
dpkg-source: info: applying fix-shebang.patch
dpkg-source: info: applying mut-type.patch
dpkg-source: info: applying pyproject.toml-Migrate-to-pdm-backend.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3585517/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='f82b04ee34574604b513b134e28b564e'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='3585517'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0yd0RRek/pbuilderrc_rEbH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0yd0RRek/b1 --logfile b1/build.log resfinder_4.4.2-2.dsc'
  SUDO_GID='111'
  SUDO_UID='106'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://46.16.76.132:3128'
I: uname -a
  Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3585517/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3, python3-cgelib, python3-pdm-backend
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19809 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
  Package dh-sequence-python3 is not installed.
 pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however:
  Package pybuild-plugin-pyproject is not installed.
 pbuilder-satisfydepends-dummy depends on python3; however:
  Package python3 is not installed.
 pbuilder-satisfydepends-dummy depends on python3-cgelib; however:
  Package python3-cgelib is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pdm-backend; however:
  Package python3-pdm-backend is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} git{a} git-man{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-autocommand{a} python3-boolean{a} python3-build{a} python3-cerberus{a} python3-cgelib{a} python3-dateutil{a} python3-editables{a} python3-fastjsonschema{a} python3-git{a} python3-gitdb{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-license-expression{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pdm-backend{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-pytz{a} python3-setuptools{a} python3-smmap{a} python3-toml{a} python3-tomli-w{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-validate-pyproject{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl krb5-locales less libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx openssh-client publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-scipy python3-tables wget 
0 packages upgraded, 111 newly installed, 0 to remove and 0 not upgraded.
Need to get 63.4 MB of archives. After unpacking 300 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-6 [257 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 22 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 27 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 30 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 31 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 32 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 33 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 34 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 36 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 39 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 40 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 41 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 42 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 44 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 56 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB]
Get: 57 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 58 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
Get: 59 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get: 61 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get: 62 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 63 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 64 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 65 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 66 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get: 67 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 68 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB]
Get: 69 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB]
Get: 70 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB]
Get: 71 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 72 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB]
Get: 73 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB]
Get: 74 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB]
Get: 75 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 76 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 77 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 78 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.12.0+git20250209.89ed161+ds-1 [365 kB]
Get: 79 http://deb.debian.org/debian trixie/main amd64 liberror-perl all 0.17029-2 [29.0 kB]
Get: 80 http://deb.debian.org/debian trixie/main amd64 git-man all 1:2.47.2-0.1 [2205 kB]
Get: 81 http://deb.debian.org/debian trixie/main amd64 git amd64 1:2.47.2-0.1 [8788 kB]
Get: 82 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get: 83 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB]
Get: 84 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB]
Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB]
Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB]
Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.45.1-1 [56.7 kB]
Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.2.2-1 [36.0 kB]
Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get: 91 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20250108 [11.6 kB]
Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-boolean all 4.0-4 [22.6 kB]
Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-cerberus all 1.3.7-1 [34.3 kB]
Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-smmap all 6.0.0-1 [20.1 kB]
Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-gitdb all 4.0.11-1 [45.5 kB]
Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-git all 3.1.37-3 [137 kB]
Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB]
Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.1-3 [150 kB]
Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.1-3 [4004 B]
Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [7295 kB]
Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB]
Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-cgelib all 0.7.3-3 [46.6 kB]
Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-editables all 0.5-2 [14.5 kB]
Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-fastjsonschema all 2.21.1-1 [22.4 kB]
Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-license-expression all 30.3.0-1 [94.6 kB]
Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-metadata all 0.9.0-1 [20.8 kB]
Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-tomli-w all 1.0.0-3 [8000 B]
Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-validate-pyproject all 0.23-2 [38.1 kB]
Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-pdm-backend all 2.4.3+ds1-1 [34.6 kB]
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Preparing to unpack .../75-python3-build_1.2.2-1_all.deb ...
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Unpacking python3-installer (0.7.0+dfsg1-3) ...
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Unpacking python3-tz (2025.1-3) ...
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Unpacking python3-pdm-backend (2.4.3+ds1-1) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:amd64 (1.5.8-1) ...
Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libicu72:amd64 (72.1-6) ...
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Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libcom-err2:amd64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:amd64 (0.192-4) ...
Setting up libkrb5support0:amd64 (1.21.3-4) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up tzdata (2024b-6) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Wed Feb 19 20:03:12 UTC 2025.
Universal Time is now:  Wed Feb 19 20:03:12 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up liberror-perl (0.17029-2) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
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Setting up dwz (0.15-1+b1) ...
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Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
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Setting up netbase (6.4) ...
Setting up libngtcp2-16:amd64 (1.9.1-1) ...
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update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
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Setting up dh-strip-nondeterminism (1.14.1-2) ...
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Setting up python3.13 (3.13.2-1) ...
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Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-wheel (0.45.1-1) ...
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Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-numpy (1:1.26.4+ds-13) ...
Setting up python3-toml (0.10.2-1) ...
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Setting up python3-license-expression (30.3.0-1) ...
Setting up python3-dateutil (2.9.0-3) ...
Setting up python3-build (1.2.2-1) ...
Setting up python3-tomli-w (1.0.0-3) ...
Setting up python3-smmap (6.0.0-1) ...
Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ...
Setting up python3-validate-pyproject (0.23-2) ...
Setting up python3-more-itertools (10.6.0-1) ...
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Setting up python3-pyproject-metadata (0.9.0-1) ...
Setting up python3-cerberus (1.3.7-1) ...
Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up libcurl3t64-gnutls:amd64 (8.12.0+git20250209.89ed161+ds-1) ...
Setting up debhelper (13.24.1) ...
Setting up python3-pytz (2025.1-3) ...
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Setting up python3-pandas (2.2.3+dfsg-8) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up git (1:2.47.2-0.1) ...
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Setting up dh-python (6.20250108) ...
Setting up python3-cgelib (0.7.3-3) ...
Setting up pybuild-plugin-pyproject (6.20250108) ...
Processing triggers for libc-bin (2.40-6) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/resfinder-4.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../resfinder_4.4.2-2_source.changes
dpkg-buildpackage: info: source package resfinder
dpkg-buildpackage: info: source version 4.4.2-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Santiago Vila <sanvila@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
   dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/resfinder-4.4.2/.pybuild/cpython3_3.13_resfinder  
* Building wheel...
/usr/lib/python3/dist-packages/pyproject_metadata/__init__.py:256: ConfigurationWarning: The one-line summary "project.description" should not contain more than one line. Readers might merge or truncate newlines.
  self.validate()
 - Adding .pdm-build/resfinder-4.4.2.dist-info/METADATA -> resfinder-4.4.2.dist-info/METADATA
 - Adding .pdm-build/resfinder-4.4.2.dist-info/WHEEL -> resfinder-4.4.2.dist-info/WHEEL
 - Adding .pdm-build/resfinder-4.4.2.dist-info/entry_points.txt -> resfinder-4.4.2.dist-info/entry_points.txt
 - Adding .pdm-build/resfinder-4.4.2.dist-info/licenses/LICENSE -> resfinder-4.4.2.dist-info/licenses/LICENSE
 - Adding src/resfinder/__init__.py -> resfinder/__init__.py
 - Adding src/resfinder/__main__.py -> resfinder/__main__.py
 - Adding src/resfinder/amr_abbreviations.md -> resfinder/amr_abbreviations.md
 - Adding src/resfinder/cge/__init__.py -> resfinder/cge/__init__.py
 - Adding src/resfinder/cge/config.py -> resfinder/cge/config.py
 - Adding src/resfinder/cge/output/__init__.py -> resfinder/cge/output/__init__.py
 - Adding src/resfinder/cge/output/exceptions.py -> resfinder/cge/output/exceptions.py
 - Adding src/resfinder/cge/output/gene_result.py -> resfinder/cge/output/gene_result.py
 - Adding src/resfinder/cge/output/orderedset.py -> resfinder/cge/output/orderedset.py
 - Adding src/resfinder/cge/output/phenotype_result.py -> resfinder/cge/output/phenotype_result.py
 - Adding src/resfinder/cge/output/seq_variation_result.py -> resfinder/cge/output/seq_variation_result.py
 - Adding src/resfinder/cge/output/std_results.py -> resfinder/cge/output/std_results.py
 - Adding src/resfinder/cge/output/table.py -> resfinder/cge/output/table.py
 - Adding src/resfinder/cge/phenotype2genotype/__init__.py -> resfinder/cge/phenotype2genotype/__init__.py
 - Adding src/resfinder/cge/phenotype2genotype/abclassdef.py -> resfinder/cge/phenotype2genotype/abclassdef.py
 - Adding src/resfinder/cge/phenotype2genotype/dbhit.py -> resfinder/cge/phenotype2genotype/dbhit.py
 - Adding src/resfinder/cge/phenotype2genotype/feature.py -> resfinder/cge/phenotype2genotype/feature.py
 - Adding src/resfinder/cge/phenotype2genotype/isolate.py -> resfinder/cge/phenotype2genotype/isolate.py
 - Adding src/resfinder/cge/phenotype2genotype/phenodbpoint.py -> resfinder/cge/phenotype2genotype/phenodbpoint.py
 - Adding src/resfinder/cge/phenotype2genotype/phenotype.py -> resfinder/cge/phenotype2genotype/phenotype.py
 - Adding src/resfinder/cge/phenotype2genotype/res_profile.py -> resfinder/cge/phenotype2genotype/res_profile.py
 - Adding src/resfinder/cge/phenotype2genotype/res_sumtable.py -> resfinder/cge/phenotype2genotype/res_sumtable.py
 - Adding src/resfinder/cge/pointfinder.py -> resfinder/cge/pointfinder.py
 - Adding src/resfinder/cge/resfinder.py -> resfinder/cge/resfinder.py
 - Adding src/resfinder/cge/runinfo.py -> resfinder/cge/runinfo.py
 - Adding src/resfinder/environment_variables.md -> resfinder/environment_variables.md
 - Adding src/resfinder/run_resfinder.py -> resfinder/run_resfinder.py
 - Adding src/resfinder/species_abbreviations.md -> resfinder/species_abbreviations.md
 - Adding resfinder-4.4.2.dist-info/RECORD -> resfinder-4.4.2.dist-info/RECORD
Successfully built resfinder-4.4.2-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
   dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /build/reproducible-path/resfinder-4.4.2/.pybuild/cpython3_3.13_resfinder/build; python3.13 -m unittest discover -v 

----------------------------------------------------------------------
Ran 0 tests in 0.000s

NO TESTS RAN
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   dh_auto_install -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
   debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/resfinder-4.4.2'
dh_install
# do not install nextflow scripts
find debian -name '*.nf' -type f | xargs rm -rf
mkdir -p debian/resfinder/usr/lib/python3/dist-packages/resfinder
mv debian/resfinder/usr/share/resfinder/__*.py debian/resfinder/usr/lib/python3/dist-packages/resfinder
mv debian/resfinder/usr/share/resfinder/*.md debian/resfinder/usr/lib/python3/dist-packages/resfinder
mv debian/resfinder/usr/share/resfinder/cge    debian/resfinder/usr/lib/python3/dist-packages/resfinder
make[1]: Leaving directory '/build/reproducible-path/resfinder-4.4.2'
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/resfinder-4.4.2'
dh_installman --language=C
make[1]: Leaving directory '/build/reproducible-path/resfinder-4.4.2'
   dh_python3 -O--buildsystem=pybuild
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   debian/rules override_dh_fixperms
make[1]: Entering directory '/build/reproducible-path/resfinder-4.4.2'
dh_fixperms
find debian -name run_indexes.sh -type f | xargs chmod +x
find debian -name run_resfinder.py -type f | xargs chmod +x
make[1]: Leaving directory '/build/reproducible-path/resfinder-4.4.2'
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
   dh_gencontrol -O--buildsystem=pybuild
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'resfinder' in '../resfinder_4.4.2-2_all.deb'.
dpkg-deb: building package 'resfinder-example' in '../resfinder-example_4.4.2-2_all.deb'.
 dpkg-genbuildinfo --build=binary -O../resfinder_4.4.2-2_amd64.buildinfo
 dpkg-genchanges --build=binary -O../resfinder_4.4.2-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/3585517 and its subdirectories
I: Current time: Wed Feb 19 08:04:59 -12 2025
I: pbuilder-time-stamp: 1739995499
Wed Feb 19 20:05:01 UTC 2025  I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Wed Feb 19 20:05:01 UTC 2025  I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Wed Feb 19 20:06:15 UTC 2025  I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Wed Feb 19 20:06:15 UTC 2025  I: resfinder_4.4.2-2_amd64.changes:
Format: 1.8
Date: Tue, 05 Nov 2024 01:10:00 +0100
Source: resfinder
Binary: resfinder resfinder-example
Architecture: all
Version: 4.4.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Santiago Vila <sanvila@debian.org>
Description:
 resfinder  - identify acquired antimicrobial resistance genes
 resfinder-example - identify acquired antimicrobial resistance genes (example data)
Closes: 1078562
Changes:
 resfinder (4.4.2-2) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Boyuan Yang ]
   * debian/patches/pyproject.toml-Migrate-to-pdm-backend.patch:
     Add patch from upstream new version to migrate from python3-pdm-pep517
     to python3-pdm-backend. Closes: #1078562.
 .
   [ Michael R. Crusoe ]
   * d/tests/control: since skip-not-installable is specified, there is
     no reason to restrict the architectures anymore.
Checksums-Sha1:
 1473b9bd29d114a696cc0cd167c27ff8849152bb 574852 resfinder-example_4.4.2-2_all.deb
 de75c79fee07ce3f2857d18357ea85e5d4c019a8 67988 resfinder_4.4.2-2_all.deb
 f7654db75852c56765f77c75608a1649b5e8883b 7534 resfinder_4.4.2-2_amd64.buildinfo
Checksums-Sha256:
 eaeb3c535d7e9c03da449599dfc5b2133b13923f3d1c1fb91738aedc76d96b04 574852 resfinder-example_4.4.2-2_all.deb
 9bf9bb64dabca2f4aebf075744d44eab3210970fbf335ee1f221eb3fd54a838a 67988 resfinder_4.4.2-2_all.deb
 a5a34825dd2f34a659592c99d913da40993f7faf0e14d5801e4a22aa31b7da5e 7534 resfinder_4.4.2-2_amd64.buildinfo
Files:
 117d4b6abaae20f5c46837eefb16ff8e 574852 science optional resfinder-example_4.4.2-2_all.deb
 5ac3887582571c40fe761fe95b3494d0 67988 science optional resfinder_4.4.2-2_all.deb
 c66865c3f9f1cc208be9f9b933a0a384 7534 science optional resfinder_4.4.2-2_amd64.buildinfo
Wed Feb 19 20:06:17 UTC 2025  I: diffoscope 288 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_31-33384.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0yd0RRek/resfinder_4.4.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0yd0RRek/resfinder_4.4.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0yd0RRek/resfinder_4.4.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0yd0RRek/b1/resfinder_4.4.2-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.0yd0RRek/b2/resfinder_4.4.2-2_amd64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile

## main (total time: 0.003s)
       0.003s      2 calls    outputs
       0.000s      1 call     cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 259ms
CPU time consumed: 257ms
Wed Feb 19 20:06:17 UTC 2025  I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists.
Wed Feb 19 20:06:17 UTC 2025  I: resfinder from trixie built successfully and reproducibly on amd64.
Wed Feb 19 20:06:19 UTC 2025  I: Submitting .buildinfo files to external archives:
Wed Feb 19 20:06:19 UTC 2025  I: Submitting 12K	b1/resfinder_4.4.2-2_amd64.buildinfo.asc
Wed Feb 19 20:06:19 UTC 2025  I: Submitting 12K	b2/resfinder_4.4.2-2_amd64.buildinfo.asc
Wed Feb 19 20:06:20 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Feb 19 20:06:20 UTC 2025  I: Done submitting .buildinfo files.
Wed Feb 19 20:06:20 UTC 2025  I: Removing signed resfinder_4.4.2-2_amd64.buildinfo.asc files:
removed './b1/resfinder_4.4.2-2_amd64.buildinfo.asc'
removed './b2/resfinder_4.4.2-2_amd64.buildinfo.asc'