Fri Feb 21 15:30:40 UTC 2025 I: starting to build roary/trixie/amd64 on jenkins on '2025-02-21 15:30'
Fri Feb 21 15:30:40 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/31707/console.log
Fri Feb 21 15:30:40 UTC 2025 I: Downloading source for trixie/roary=3.13.0+dfsg-2
--2025-02-21 15:30:40-- http://deb.debian.org/debian/pool/main/r/roary/roary_3.13.0%2bdfsg-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2507 (2.4K) [text/prs.lines.tag]
Saving to: ‘roary_3.13.0+dfsg-2.dsc’
0K .. 100% 453M=0s
2025-02-21 15:30:40 (453 MB/s) - ‘roary_3.13.0+dfsg-2.dsc’ saved [2507/2507]
Fri Feb 21 15:30:40 UTC 2025 I: roary_3.13.0+dfsg-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: roary
Binary: roary
Architecture: all
Version: 3.13.0+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Homepage: https://sanger-pathogens.github.io/Roary/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/roary
Vcs-Git: https://salsa.debian.org/med-team/roary.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree
Build-Depends-Indep: perl
Package-List:
roary deb science optional arch=all
Checksums-Sha1:
ec41e9813412b1e168328131cabc91ae1ea06162 207348 roary_3.13.0+dfsg.orig.tar.xz
d2845cda817077a90ae16f282ade21b25612ea0f 7308 roary_3.13.0+dfsg-2.debian.tar.xz
Checksums-Sha256:
5450fe6f4bab8b27829d2ec6836c0a8c9a38d42b3891fab29b10a9587dee2fd1 207348 roary_3.13.0+dfsg.orig.tar.xz
8eecf0867aba06a3aaf56ba0f2d21bb396aaa1ad1392defeeaf75f267830d7a6 7308 roary_3.13.0+dfsg-2.debian.tar.xz
Files:
fe3935332843c9d4dfb4d4c5cb9080a6 207348 roary_3.13.0+dfsg.orig.tar.xz
d26aa7dcb13361bf384ee6dfd489df10 7308 roary_3.13.0+dfsg-2.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=qHd7
-----END PGP SIGNATURE-----
Fri Feb 21 15:30:40 UTC 2025 I: Checking whether the package is not for us
Fri Feb 21 15:30:40 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net.
Fri Feb 21 15:30:40 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net.
Fri Feb 21 15:38:43 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Feb 21 03:30:43 -12 2025
I: pbuilder-time-stamp: 1740151843
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [roary_3.13.0+dfsg-2.dsc]
I: copying [./roary_3.13.0+dfsg.orig.tar.xz]
I: copying [./roary_3.13.0+dfsg-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./roary_3.13.0+dfsg-2.dsc: unsupported subcommand
dpkg-source: info: extracting roary in roary-3.13.0+dfsg
dpkg-source: info: unpacking roary_3.13.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking roary_3.13.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rename_R_script.patch
dpkg-source: info: applying use-dz-starter.patch
dpkg-source: info: applying use-debian-perl-path.patch
dpkg-source: info: applying new-bioperl-require.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3193604/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='7e35572a49a64a4ea230b9c2d8fa3f97'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3193604'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QdQFUasI/pbuilderrc_BHmj --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QdQFUasI/b1 --logfile b1/build.log roary_3.13.0+dfsg-2.dsc'
SUDO_GID='111'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3193604/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19809 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-dist-zilla; however:
Package dh-dist-zilla is not installed.
pbuilder-satisfydepends-dummy depends on libdist-zilla-plugin-podweaver-perl; however:
Package libdist-zilla-plugin-podweaver-perl is not installed.
pbuilder-satisfydepends-dummy depends on bioperl (>= 1.7.4); however:
Package bioperl is not installed.
pbuilder-satisfydepends-dummy depends on libarray-utils-perl; however:
Package libarray-utils-perl is not installed.
pbuilder-satisfydepends-dummy depends on libenv-path-perl; however:
Package libenv-path-perl is not installed.
pbuilder-satisfydepends-dummy depends on libexception-class-perl; however:
Package libexception-class-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfile-find-rule-perl; however:
Package libfile-find-rule-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfile-grep-perl; however:
Package libfile-grep-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfile-slurper-perl; however:
Package libfile-slurper-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfile-which-perl; however:
Package libfile-which-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfindbin-libs-perl; however:
Package libfindbin-libs-perl is not installed.
pbuilder-satisfydepends-dummy depends on libgraph-perl; however:
Package libgraph-perl is not installed.
pbuilder-satisfydepends-dummy depends on libgraph-readwrite-perl; however:
Package libgraph-readwrite-perl is not installed.
pbuilder-satisfydepends-dummy depends on liblog-log4perl-perl; however:
Package liblog-log4perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libmoose-perl; however:
Package libmoose-perl is not installed.
pbuilder-satisfydepends-dummy depends on libperlio-utf8-strict-perl; however:
Package libperlio-utf8-strict-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
Package libtest-most-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-file-perl; however:
Package libtest-file-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-files-perl; however:
Package libtest-files-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-output-perl; however:
Package libtest-output-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtext-csv-perl; however:
Package libtext-csv-perl is not installed.
pbuilder-satisfydepends-dummy depends on bedtools; however:
Package bedtools is not installed.
pbuilder-satisfydepends-dummy depends on cd-hit; however:
Package cd-hit is not installed.
pbuilder-satisfydepends-dummy depends on ncbi-blast+; however:
Package ncbi-blast+ is not installed.
pbuilder-satisfydepends-dummy depends on mcl; however:
Package mcl is not installed.
pbuilder-satisfydepends-dummy depends on parallel; however:
Package parallel is not installed.
pbuilder-satisfydepends-dummy depends on prank; however:
Package prank is not installed.
pbuilder-satisfydepends-dummy depends on r-base-core; however:
Package r-base-core is not installed.
pbuilder-satisfydepends-dummy depends on mafft; however:
Package mafft is not installed.
pbuilder-satisfydepends-dummy depends on fasttree; however:
Package fasttree is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bioperl{a} bsdextrautils{a} ca-certificates{a} cd-hit{a} debhelper{a} dh-autoreconf{a} dh-dist-zilla{a} dh-strip-nondeterminism{a} dwz{a} fasttree{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-c3-perl{a} libalgorithm-diff-perl{a} libaliased-perl{a} libapp-cmd-perl{a} libarchive-zip-perl{a} libarray-utils-perl{a} libautobox-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcapture-tiny-perl{a} libcarp-clan-perl{a} libclass-c3-perl{a} libclass-data-inheritable-perl{a} libclass-inspector-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclass-method-modifiers-perl{a} libclass-singleton-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libconfig-ini-perl{a} libconfig-mvp-perl{a} libconfig-mvp-reader-ini-perl{a} libconst-fast-perl{a} libcpan-uploader-perl{a} libcpanel-json-xs-perl{a} libcurl4t64{a} libdata-compare-perl{a} libdata-optlist-perl{a} libdata-section-perl{a} libdata-stag-perl{a} libdatetime-locale-perl{a} libdatetime-perl{a} libdatetime-timezone-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdist-zilla-perl{a} libdist-zilla-plugin-podweaver-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libenv-path-perl{a} libeval-closure-perl{a} libexception-class-perl{a} libexpat1{a} libexporter-tiny-perl{a} libffi8{a} libfile-chdir-perl{a} libfile-copy-recursive-perl{a} libfile-find-rule-perl{a} libfile-grep-perl{a} libfile-listing-perl{a} libfile-pushd-perl{a} libfile-sharedir-install-perl{a} libfile-sharedir-perl{a} libfile-slurper-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfindbin-libs-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgetopt-long-descriptive-perl{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraph-perl{a} libgraph-readwrite-perl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhash-merge-simple-perl{a} libheap-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu72{a} libidn2-0{a} libimport-into-perl{a} libio-all-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libio-stringy-perl{a} libio-tiecombine-perl{a} libjbig0{a} libjpeg62-turbo{a} libjson-maybexs-perl{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} liblerc4{a} liblist-moreutils-perl{a} liblist-moreutils-xs-perl{a} liblmdb0{a} liblog-dispatch-array-perl{a} liblog-dispatch-perl{a} liblog-dispatchouli-perl{a} liblog-log4perl-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libmixin-linewise-perl{a} libmodule-implementation-perl{a} libmodule-path-perl{a} libmodule-pluggable-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoo-perl{a} libmoose-autobox-perl{a} libmoose-perl{a} libmoosex-lazyrequire-perl{a} libmoosex-oneargnew-perl{a} libmoosex-role-parameterized-perl{a} libmoosex-setonce-perl{a} libmoosex-types-perl{a} libmoosex-types-perl-perl{a} libmro-compat-perl{a} libnamespace-autoclean-perl{a} libnamespace-clean-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnghttp3-9{a} libnumber-compare-perl{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpadwalker-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libparams-validate-perl{a} libparams-validationcompiler-perl{a} libparse-yapp-perl{a} libpath-tiny-perl{a} libperl-prereqscanner-perl{a} libperl-version-perl{a} libperlio-utf8-strict-perl{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpod-elemental-perl{a} libpod-elemental-perlmunger-perl{a} libpod-eventual-perl{a} libpod-weaver-perl{a} libppi-perl{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librole-hasmessage-perl{a} librole-identifiable-perl{a} librole-tiny-perl{a} librtmp1{a} libsafe-isa-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libscope-guard-perl{a} libsensors-config{a} libsensors5{a} libset-object-perl{a} libsharpyuv0{a} libsm6{a} libsoftware-license-perl{a} libspecio-perl{a} libspiffy-perl{a} libssh2-1t64{a} libstring-errf-perl{a} libstring-flogger-perl{a} libstring-formatter-perl{a} libstring-rewriteprefix-perl{a} libstring-truncate-perl{a} libsub-exporter-formethods-perl{a} libsub-exporter-globexporter-perl{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-quote-perl{a} libsub-uplevel-perl{a} libsyntax-keyword-junction-perl{a} libtask-weaken-perl{a} libtasn1-6{a} libtcl8.6{a} libterm-encoding-perl{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-file-perl{a} libtest-files-perl{a} libtest-most-perl{a} libtest-output-perl{a} libtest-warn-perl{a} libtest2-suite-perl{a} libtext-charwidth-perl{a} libtext-csv-perl{a} libtext-diff-perl{a} libtext-glob-perl{a} libtext-template-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libthrowable-perl{a} libtie-ixhash-perl{a} libtiff6{a} libtimedate-perl{a} libtingea0{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libtype-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml-parser-perl{a} libxml-writer-perl{a} libxml2{a} libxrender1{a} libxss1{a} libxstring-perl{a} libxt6t64{a} libyaml-pp-perl{a} libyaml-tiny-perl{a} m4{a} mafft{a} man-db{a} mcl{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} openssl{a} parallel{a} perl-openssl-defaults{a} po-debconf{a} prank{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} r-base-core{a} readline-common{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a}
The following packages are RECOMMENDED but will NOT be installed:
bash-completion bcron bioperl-run cpanminus cron cronie curl devscripts krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarchive-tar-wrapper-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclass-c3-xs-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libgd-perl libglib2.0-data libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libipc-shareable-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libmailtools-perl libmime-lite-perl libmldbm-perl libnet-dbus-perl libpod-coverage-trustpod-perl libpostscript-perl libref-util-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libterm-readline-gnu-perl libterm-ui-perl libtest-cpan-meta-perl libtest-pod-coverage-perl libtest-pod-perl libtext-csv-xs-perl libtype-tiny-xs-perl libunicode-utf8-perl libx11-protocol-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libyaml-perl linux-sysctl-defaults lynx perl-doc perl-tk psmisc publicsuffix r-base-dev r-doc-html r-recommended ruby shared-mime-info systemd systemd-cron wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 325 newly installed, 0 to remove and 0 not upgraded.
Need to get 119 MB of archives. After unpacking 401 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 22 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB]
Get: 27 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get: 30 http://deb.debian.org/debian trixie/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get: 31 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0049 [42.5 kB]
Get: 32 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 33 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 34 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB]
Get: 36 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get: 39 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB]
Get: 40 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 41 http://deb.debian.org/debian trixie/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get: 42 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get: 44 http://deb.debian.org/debian trixie/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB]
Get: 49 http://deb.debian.org/debian trixie/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 51 http://deb.debian.org/debian trixie/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 libtest-most-perl all 0.38-1 [25.1 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 bioperl all 1.7.8-1 [246 kB]
Get: 54 http://deb.debian.org/debian trixie/main amd64 cd-hit amd64 4.8.1-4 [522 kB]
Get: 55 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 56 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 57 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 58 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 59 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 61 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 62 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 63 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 64 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 65 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 66 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 67 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 68 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 69 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB]
Get: 70 http://deb.debian.org/debian trixie/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get: 71 http://deb.debian.org/debian trixie/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get: 72 http://deb.debian.org/debian trixie/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get: 73 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get: 74 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get: 75 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB]
Get: 76 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get: 77 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 78 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get: 79 http://deb.debian.org/debian trixie/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get: 80 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get: 81 http://deb.debian.org/debian trixie/main amd64 libclass-load-perl all 0.25-2 [15.3 kB]
Get: 82 http://deb.debian.org/debian trixie/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB]
Get: 83 http://deb.debian.org/debian trixie/main amd64 libparams-validate-perl amd64 1.31-2+b3 [63.4 kB]
Get: 84 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get: 85 http://deb.debian.org/debian trixie/main amd64 libgetopt-long-descriptive-perl all 0.116-2 [27.7 kB]
Get: 86 http://deb.debian.org/debian trixie/main amd64 libio-tiecombine-perl all 1.005-3 [10.8 kB]
Get: 87 http://deb.debian.org/debian trixie/main amd64 libmodule-pluggable-perl all 5.2-5 [23.0 kB]
Get: 88 http://deb.debian.org/debian trixie/main amd64 libstring-rewriteprefix-perl all 0.009-1 [7140 B]
Get: 89 http://deb.debian.org/debian trixie/main amd64 libapp-cmd-perl all 0.337-2 [61.4 kB]
Get: 90 http://deb.debian.org/debian trixie/main amd64 libscope-guard-perl all 0.21-2 [8212 B]
Get: 91 http://deb.debian.org/debian trixie/main amd64 libautobox-perl amd64 3.0.2-1+b1 [33.0 kB]
Get: 92 http://deb.debian.org/debian trixie/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get: 93 http://deb.debian.org/debian trixie/main amd64 libmixin-linewise-perl all 0.111-1 [14.4 kB]
Get: 94 http://deb.debian.org/debian trixie/main amd64 libconfig-ini-perl all 1:0.029-1 [23.7 kB]
Get: 95 http://deb.debian.org/debian trixie/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB]
Get: 96 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get: 97 http://deb.debian.org/debian trixie/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get: 98 http://deb.debian.org/debian trixie/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get: 99 http://deb.debian.org/debian trixie/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB]
Get: 100 http://deb.debian.org/debian trixie/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB]
Get: 101 http://deb.debian.org/debian trixie/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get: 102 http://deb.debian.org/debian trixie/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB]
Get: 103 http://deb.debian.org/debian trixie/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get: 104 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get: 105 http://deb.debian.org/debian trixie/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get: 106 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB]
Get: 107 http://deb.debian.org/debian trixie/main amd64 libmoose-perl amd64 2.2207-1+b3 [766 kB]
Get: 108 http://deb.debian.org/debian trixie/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get: 109 http://deb.debian.org/debian trixie/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get: 110 http://deb.debian.org/debian trixie/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get: 111 http://deb.debian.org/debian trixie/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get: 112 http://deb.debian.org/debian trixie/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get: 113 http://deb.debian.org/debian trixie/main amd64 libnamespace-autoclean-perl all 0.31-1 [13.8 kB]
Get: 114 http://deb.debian.org/debian trixie/main amd64 libmoosex-role-parameterized-perl all 1.11-2 [41.9 kB]
Get: 115 http://deb.debian.org/debian trixie/main amd64 libmoosex-oneargnew-perl all 0.007-1 [8180 B]
Get: 116 http://deb.debian.org/debian trixie/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB]
Get: 117 http://deb.debian.org/debian trixie/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get: 118 http://deb.debian.org/debian trixie/main amd64 libstring-formatter-perl all 1.235-1 [22.1 kB]
Get: 119 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 120 http://deb.debian.org/debian trixie/main amd64 libstring-errf-perl all 0.009-1 [12.9 kB]
Get: 121 http://deb.debian.org/debian trixie/main amd64 librole-hasmessage-perl all 0.007-1 [9112 B]
Get: 122 http://deb.debian.org/debian trixie/main amd64 librole-identifiable-perl all 0.009-1 [10.4 kB]
Get: 123 http://deb.debian.org/debian trixie/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get: 124 http://deb.debian.org/debian trixie/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB]
Get: 125 http://deb.debian.org/debian trixie/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get: 126 http://deb.debian.org/debian trixie/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get: 127 http://deb.debian.org/debian trixie/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get: 128 http://deb.debian.org/debian trixie/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get: 129 http://deb.debian.org/debian trixie/main amd64 libthrowable-perl all 1.001-2 [15.7 kB]
Get: 130 http://deb.debian.org/debian trixie/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB]
Get: 131 http://deb.debian.org/debian trixie/main amd64 libconfig-mvp-perl all 2.200013-1 [47.1 kB]
Get: 132 http://deb.debian.org/debian trixie/main amd64 libconfig-mvp-reader-ini-perl all 2.101465-1 [6900 B]
Get: 133 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get: 134 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB]
Get: 135 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get: 136 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB]
Get: 137 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get: 138 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 139 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get: 140 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get: 141 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get: 142 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get: 143 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get: 144 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get: 145 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 146 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 147 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get: 148 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get: 149 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get: 150 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 151 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB]
Get: 152 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get: 153 http://deb.debian.org/debian trixie/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get: 154 http://deb.debian.org/debian trixie/main amd64 libcpan-uploader-perl all 0.103018-1 [16.3 kB]
Get: 155 http://deb.debian.org/debian trixie/main amd64 libdata-section-perl all 0.200008-1 [13.1 kB]
Get: 156 http://deb.debian.org/debian trixie/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get: 157 http://deb.debian.org/debian trixie/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get: 158 http://deb.debian.org/debian trixie/main amd64 libparams-validationcompiler-perl all 0.31-1 [30.9 kB]
Get: 159 http://deb.debian.org/debian trixie/main amd64 libxstring-perl amd64 0.005-2+b4 [8076 B]
Get: 160 http://deb.debian.org/debian trixie/main amd64 libspecio-perl all 0.49-1 [132 kB]
Get: 161 http://deb.debian.org/debian trixie/main amd64 libdatetime-locale-perl all 1:1.41-1 [3131 kB]
Get: 162 http://deb.debian.org/debian trixie/main amd64 libclass-singleton-perl all 1.6-2 [12.5 kB]
Get: 163 http://deb.debian.org/debian trixie/main amd64 libdatetime-timezone-perl all 1:2.64-1+2025a [261 kB]
Get: 164 http://deb.debian.org/debian trixie/main amd64 libdatetime-perl amd64 2:1.65-1+b2 [116 kB]
Get: 165 http://deb.debian.org/debian trixie/main amd64 libfile-copy-recursive-perl all 0.45-4 [20.0 kB]
Get: 166 http://deb.debian.org/debian trixie/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get: 167 http://deb.debian.org/debian trixie/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get: 168 http://deb.debian.org/debian trixie/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
Get: 169 http://deb.debian.org/debian trixie/main amd64 libfile-pushd-perl all 1.016-2 [13.5 kB]
Get: 170 http://deb.debian.org/debian trixie/main amd64 libfile-sharedir-install-perl all 0.14-2 [11.6 kB]
Get: 171 http://deb.debian.org/debian trixie/main amd64 libhash-merge-simple-perl all 0.052-1 [8232 B]
Get: 172 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB]
Get: 173 http://deb.debian.org/debian trixie/main amd64 liblog-dispatch-perl all 2.71-1 [75.8 kB]
Get: 174 http://deb.debian.org/debian trixie/main amd64 liblog-dispatch-array-perl all 1.005-1 [6700 B]
Get: 175 http://deb.debian.org/debian trixie/main amd64 libstring-flogger-perl all 1.101246-1 [7380 B]
Get: 176 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-globexporter-perl all 0.006-1 [8024 B]
Get: 177 http://deb.debian.org/debian trixie/main amd64 liblog-dispatchouli-perl all 3.009-1 [34.7 kB]
Get: 178 http://deb.debian.org/debian trixie/main amd64 libexporter-tiny-perl all 1.006002-1 [38.7 kB]
Get: 179 http://deb.debian.org/debian trixie/main amd64 liblist-moreutils-xs-perl amd64 0.430-4+b2 [42.1 kB]
Get: 180 http://deb.debian.org/debian trixie/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB]
Get: 181 http://deb.debian.org/debian trixie/main amd64 libsyntax-keyword-junction-perl all 0.003009-1 [12.7 kB]
Get: 182 http://deb.debian.org/debian trixie/main amd64 libmoose-autobox-perl all 0.16-2 [52.8 kB]
Get: 183 http://deb.debian.org/debian trixie/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get: 184 http://deb.debian.org/debian trixie/main amd64 libmoosex-lazyrequire-perl all 0.11-2 [9212 B]
Get: 185 http://deb.debian.org/debian trixie/main amd64 libmoosex-setonce-perl all 0.200002-2 [6632 B]
Get: 186 http://deb.debian.org/debian trixie/main amd64 libcarp-clan-perl all 6.08-2 [14.1 kB]
Get: 187 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-formethods-perl all 0.100055-1 [8024 B]
Get: 188 http://deb.debian.org/debian trixie/main amd64 libmoosex-types-perl all 0.50-2 [54.6 kB]
Get: 189 http://deb.debian.org/debian trixie/main amd64 libmoosex-types-perl-perl all 0.101344-1 [8160 B]
Get: 190 http://deb.debian.org/debian trixie/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB]
Get: 191 http://deb.debian.org/debian trixie/main amd64 libmodule-path-perl all 0.19-3 [12.3 kB]
Get: 192 http://deb.debian.org/debian trixie/main amd64 libsafe-isa-perl all 1.000010-1 [8288 B]
Get: 193 http://deb.debian.org/debian trixie/main amd64 libtask-weaken-perl all 1.06-2 [9364 B]
Get: 194 http://deb.debian.org/debian trixie/main amd64 libyaml-pp-perl all 0.39.0-1 [111 kB]
Get: 195 http://deb.debian.org/debian trixie/main amd64 libppi-perl all 1.281-1 [299 kB]
Get: 196 http://deb.debian.org/debian trixie/main amd64 libtype-tiny-perl all 2.004000-1 [357 kB]
Get: 197 http://deb.debian.org/debian trixie/main amd64 libperl-prereqscanner-perl all 1.100-1 [31.0 kB]
Get: 198 http://deb.debian.org/debian trixie/main amd64 libperl-version-perl all 1.018-1 [29.4 kB]
Get: 199 http://deb.debian.org/debian trixie/main amd64 libtext-template-perl all 1.61-1 [54.4 kB]
Get: 200 http://deb.debian.org/debian trixie/main amd64 libsoftware-license-perl all 0.104006-1 [116 kB]
Get: 201 http://deb.debian.org/debian trixie/main amd64 libterm-encoding-perl all 0.03-2 [4980 B]
Get: 202 http://deb.debian.org/debian trixie/main amd64 libyaml-tiny-perl all 1.76-1 [29.8 kB]
Get: 203 http://deb.debian.org/debian trixie/main amd64 libdist-zilla-perl all 6.032-1 [343 kB]
Get: 204 http://deb.debian.org/debian trixie/main amd64 dh-dist-zilla all 1.4.1 [17.9 kB]
Get: 205 http://deb.debian.org/debian trixie/main amd64 fasttree amd64 2.1.11-2 [181 kB]
Get: 206 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 207 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB]
Get: 208 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 209 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 210 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 211 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB]
Get: 212 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB]
Get: 213 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2 [463 kB]
Get: 214 http://deb.debian.org/debian trixie/main amd64 libarray-utils-perl all 0.5-3 [6184 B]
Get: 215 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get: 216 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 217 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 218 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 219 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 220 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 221 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 222 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 223 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 224 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 225 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB]
Get: 226 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get: 227 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 228 http://deb.debian.org/debian trixie/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get: 229 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 230 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 231 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 232 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get: 233 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 234 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
Get: 235 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB]
Get: 236 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB]
Get: 237 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB]
Get: 238 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 239 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB]
Get: 240 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 241 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 242 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get: 243 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get: 244 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 245 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 246 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB]
Get: 247 http://deb.debian.org/debian trixie/main amd64 libdata-compare-perl all 1.29-1 [19.6 kB]
Get: 248 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get: 249 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get: 250 http://deb.debian.org/debian trixie/main amd64 libpod-eventual-perl all 0.094003-1 [14.2 kB]
Get: 251 http://deb.debian.org/debian trixie/main amd64 libstring-truncate-perl all 1.100603-1 [10.2 kB]
Get: 252 http://deb.debian.org/debian trixie/main amd64 libpod-elemental-perl all 0.103006-1 [67.2 kB]
Get: 253 http://deb.debian.org/debian trixie/main amd64 libpod-elemental-perlmunger-perl all 0.200007-1 [10.5 kB]
Get: 254 http://deb.debian.org/debian trixie/main amd64 libpod-weaver-perl all 4.020-1 [70.1 kB]
Get: 255 http://deb.debian.org/debian trixie/main amd64 libdist-zilla-plugin-podweaver-perl all 4.010-1 [9580 B]
Get: 256 http://deb.debian.org/debian trixie/main amd64 libenv-path-perl all 0.19-4 [19.1 kB]
Get: 257 http://deb.debian.org/debian trixie/main amd64 libfile-chdir-perl all 0.1008-1.2 [11.9 kB]
Get: 258 http://deb.debian.org/debian trixie/main amd64 libfile-grep-perl all 0.02-3 [8352 B]
Get: 259 http://deb.debian.org/debian trixie/main amd64 libfile-slurper-perl all 0.014-1 [8560 B]
Get: 260 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 261 http://deb.debian.org/debian trixie/main amd64 libfindbin-libs-perl all 3.0.2-1 [29.7 kB]
Get: 262 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 263 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB]
Get: 264 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.83.3-2 [1511 kB]
Get: 265 http://deb.debian.org/debian trixie/main amd64 libheap-perl all 0.80-5 [34.3 kB]
Get: 266 http://deb.debian.org/debian trixie/main amd64 libset-object-perl amd64 1.42-1+b5 [37.6 kB]
Get: 267 http://deb.debian.org/debian trixie/main amd64 libgraph-perl all 1:0.9733-1 [110 kB]
Get: 268 http://deb.debian.org/debian trixie/main amd64 libspiffy-perl all 0.46-1 [25.7 kB]
Get: 269 http://deb.debian.org/debian trixie/main amd64 libio-all-perl all 0.87-2 [67.3 kB]
Get: 270 http://deb.debian.org/debian trixie/main amd64 libparse-yapp-perl all 1.21-4 [41.5 kB]
Get: 271 http://deb.debian.org/debian trixie/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB]
Get: 272 http://deb.debian.org/debian trixie/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB]
Get: 273 http://deb.debian.org/debian trixie/main amd64 libgraph-readwrite-perl all 2.10-1 [45.2 kB]
Get: 274 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 275 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB]
Get: 276 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB]
Get: 277 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get: 278 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 279 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB]
Get: 280 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get: 281 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 282 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB]
Get: 283 http://deb.debian.org/debian trixie/main amd64 liblog-log4perl-perl all 1.57-1 [367 kB]
Get: 284 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB]
Get: 285 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB]
Get: 286 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB]
Get: 287 http://deb.debian.org/debian trixie/main amd64 libpadwalker-perl amd64 2.5-1+b6 [18.6 kB]
Get: 288 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get: 289 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get: 290 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB]
Get: 291 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB]
Get: 292 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB]
Get: 293 http://deb.debian.org/debian trixie/main amd64 libpaper2 amd64 2.2.5-0.3+b1 [16.6 kB]
Get: 294 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 2.2.5-0.3+b1 [16.4 kB]
Get: 295 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get: 296 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB]
Get: 297 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get: 298 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB]
Get: 299 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get: 300 http://deb.debian.org/debian trixie/main amd64 libtest-file-perl all 1.994-1 [24.8 kB]
Get: 301 http://deb.debian.org/debian trixie/main amd64 libtest2-suite-perl all 0.000163-1 [383 kB]
Get: 302 http://deb.debian.org/debian trixie/main amd64 libtest-files-perl all 0.26-1 [21.6 kB]
Get: 303 http://deb.debian.org/debian trixie/main amd64 libtest-output-perl all 1.035-1 [16.4 kB]
Get: 304 http://deb.debian.org/debian trixie/main amd64 libtext-csv-perl all 2.05-1 [115 kB]
Get: 305 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get: 306 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get: 307 http://deb.debian.org/debian trixie/main amd64 libtingea0 amd64 21-361-2+b2 [52.1 kB]
Get: 308 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 309 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get: 310 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get: 311 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get: 312 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get: 313 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB]
Get: 314 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get: 315 http://deb.debian.org/debian trixie/main amd64 mafft amd64 7.505-1 [1078 kB]
Get: 316 http://deb.debian.org/debian trixie/main amd64 mcl amd64 1:22-282+ds-4 [477 kB]
Get: 317 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB]
Get: 318 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB]
Get: 319 http://deb.debian.org/debian trixie/main amd64 sysstat amd64 12.7.5-2 [623 kB]
Get: 320 http://deb.debian.org/debian trixie/main amd64 parallel all 20240222+ds-2 [2163 kB]
Get: 321 http://deb.debian.org/debian trixie/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB]
Get: 322 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-14 [233 kB]
Get: 323 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB]
Get: 324 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 325 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB]
Fetched 119 MB in 4s (26.7 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:amd64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19809 files and directories currently installed.)
Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ...
Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.6.4-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ...
Unpacking python3.13-minimal (3.13.2-1) ...
Setting up libpython3.13-minimal:amd64 (3.13.2-1) ...
Setting up libexpat1:amd64 (2.6.4-1) ...
Setting up python3.13-minimal (3.13.2-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20143 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ...
Unpacking python3-minimal (3.13.1-2) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../2-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../3-tzdata_2025a-2_all.deb ...
Unpacking tzdata (2025a-2) ...
Selecting previously unselected package libffi8:amd64.
Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ...
Unpacking libffi8:amd64 (3.4.7-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../5-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:amd64.
Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:amd64 (8.2-6) ...
Selecting previously unselected package libpython3.13-stdlib:amd64.
Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ...
Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ...
Unpacking python3.13 (3.13.2-1) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up python3-minimal (3.13.1-2) ...
Selecting previously unselected package python3.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21153 files and directories currently installed.)
Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ...
Unpacking python3 (3.13.1-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package openssl.
Preparing to unpack .../004-openssl_3.4.1-1_amd64.deb ...
Unpacking openssl (3.4.1-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../005-ca-certificates_20241223_all.deb ...
Unpacking ca-certificates (20241223) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../007-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../008-file_1%3a5.45-3+b1_amd64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../009-gettext-base_0.23.1-1_amd64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../010-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../011-groff-base_1.23.0-7_amd64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../012-bsdextrautils_2.40.4-3_amd64.deb ...
Unpacking bsdextrautils (2.40.4-3) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../013-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../014-man-db_2.13.0-1_amd64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../015-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../016-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../017-ucf_3.0049_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0049) ...
Selecting previously unselected package m4.
Preparing to unpack .../018-m4_1.4.19-5_amd64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../019-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../021-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../022-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package bedtools.
Preparing to unpack .../023-bedtools_2.31.1+dfsg-2_amd64.deb ...
Unpacking bedtools (2.31.1+dfsg-2) ...
Selecting previously unselected package libio-string-perl.
Preparing to unpack .../024-libio-string-perl_1.08-4_all.deb ...
Unpacking libio-string-perl (1.08-4) ...
Selecting previously unselected package libdata-stag-perl.
Preparing to unpack .../025-libdata-stag-perl_0.14-3_all.deb ...
Unpacking libdata-stag-perl (0.14-3) ...
Selecting previously unselected package libbio-perl-perl.
Preparing to unpack .../026-libbio-perl-perl_1.7.8-1_all.deb ...
Unpacking libbio-perl-perl (1.7.8-1) ...
Selecting previously unselected package libclass-data-inheritable-perl.
Preparing to unpack .../027-libclass-data-inheritable-perl_0.10-1_all.deb ...
Unpacking libclass-data-inheritable-perl (0.10-1) ...
Selecting previously unselected package libdevel-stacktrace-perl.
Preparing to unpack .../028-libdevel-stacktrace-perl_2.0500-1_all.deb ...
Unpacking libdevel-stacktrace-perl (2.0500-1) ...
Selecting previously unselected package libexception-class-perl.
Preparing to unpack .../029-libexception-class-perl_1.45-1_all.deb ...
Unpacking libexception-class-perl (1.45-1) ...
Selecting previously unselected package libtest-deep-perl.
Preparing to unpack .../030-libtest-deep-perl_1.204-1_all.deb ...
Unpacking libtest-deep-perl (1.204-1) ...
Selecting previously unselected package libcapture-tiny-perl.
Preparing to unpack .../031-libcapture-tiny-perl_0.50-1_all.deb ...
Unpacking libcapture-tiny-perl (0.50-1) ...
Selecting previously unselected package libalgorithm-diff-perl.
Preparing to unpack .../032-libalgorithm-diff-perl_1.201-1_all.deb ...
Unpacking libalgorithm-diff-perl (1.201-1) ...
Selecting previously unselected package libtext-diff-perl.
Preparing to unpack .../033-libtext-diff-perl_1.45-2_all.deb ...
Unpacking libtext-diff-perl (1.45-2) ...
Selecting previously unselected package libtest-differences-perl.
Preparing to unpack .../034-libtest-differences-perl_0.71-1_all.deb ...
Unpacking libtest-differences-perl (0.71-1) ...
Selecting previously unselected package libsub-uplevel-perl.
Preparing to unpack .../035-libsub-uplevel-perl_0.2800-3_all.deb ...
Unpacking libsub-uplevel-perl (0.2800-3) ...
Selecting previously unselected package libtest-exception-perl.
Preparing to unpack .../036-libtest-exception-perl_0.43-3_all.deb ...
Unpacking libtest-exception-perl (0.43-3) ...
Selecting previously unselected package libtest-warn-perl.
Preparing to unpack .../037-libtest-warn-perl_0.37-2_all.deb ...
Unpacking libtest-warn-perl (0.37-2) ...
Selecting previously unselected package libtest-most-perl.
Preparing to unpack .../038-libtest-most-perl_0.38-1_all.deb ...
Unpacking libtest-most-perl (0.38-1) ...
Selecting previously unselected package bioperl.
Preparing to unpack .../039-bioperl_1.7.8-1_all.deb ...
Unpacking bioperl (1.7.8-1) ...
Selecting previously unselected package cd-hit.
Preparing to unpack .../040-cd-hit_4.8.1-4_amd64.deb ...
Unpacking cd-hit (4.8.1-4) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../041-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../042-libtool_2.5.4-3_all.deb ...
Unpacking libtool (2.5.4-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../043-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../044-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../045-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../046-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:amd64.
Preparing to unpack .../047-libelf1t64_0.192-4_amd64.deb ...
Unpacking libelf1t64:amd64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../048-dwz_0.15-1+b1_amd64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:amd64.
Preparing to unpack .../049-libunistring5_1.3-1_amd64.deb ...
Unpacking libunistring5:amd64 (1.3-1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../050-libicu72_72.1-6_amd64.deb ...
Unpacking libicu72:amd64 (72.1-6) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../051-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ...
Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../052-gettext_0.23.1-1_amd64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../053-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../054-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../055-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package libparams-util-perl.
Preparing to unpack .../056-libparams-util-perl_1.102-3+b1_amd64.deb ...
Unpacking libparams-util-perl (1.102-3+b1) ...
Selecting previously unselected package libsub-install-perl.
Preparing to unpack .../057-libsub-install-perl_0.929-1_all.deb ...
Unpacking libsub-install-perl (0.929-1) ...
Selecting previously unselected package libdata-optlist-perl.
Preparing to unpack .../058-libdata-optlist-perl_0.114-1_all.deb ...
Unpacking libdata-optlist-perl (0.114-1) ...
Selecting previously unselected package libb-hooks-op-check-perl:amd64.
Preparing to unpack .../059-libb-hooks-op-check-perl_0.22-3+b2_amd64.deb ...
Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Selecting previously unselected package libdynaloader-functions-perl.
Preparing to unpack .../060-libdynaloader-functions-perl_0.004-1_all.deb ...
Unpacking libdynaloader-functions-perl (0.004-1) ...
Selecting previously unselected package libdevel-callchecker-perl:amd64.
Preparing to unpack .../061-libdevel-callchecker-perl_0.009-1+b1_amd64.deb ...
Unpacking libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Selecting previously unselected package libparams-classify-perl:amd64.
Preparing to unpack .../062-libparams-classify-perl_0.015-2+b4_amd64.deb ...
Unpacking libparams-classify-perl:amd64 (0.015-2+b4) ...
Selecting previously unselected package libmodule-runtime-perl.
Preparing to unpack .../063-libmodule-runtime-perl_0.016-2_all.deb ...
Unpacking libmodule-runtime-perl (0.016-2) ...
Selecting previously unselected package libtry-tiny-perl.
Preparing to unpack .../064-libtry-tiny-perl_0.32-1_all.deb ...
Unpacking libtry-tiny-perl (0.32-1) ...
Selecting previously unselected package libmodule-implementation-perl.
Preparing to unpack .../065-libmodule-implementation-perl_0.09-2_all.deb ...
Unpacking libmodule-implementation-perl (0.09-2) ...
Selecting previously unselected package libpackage-stash-perl.
Preparing to unpack .../066-libpackage-stash-perl_0.40-1_all.deb ...
Unpacking libpackage-stash-perl (0.40-1) ...
Selecting previously unselected package libclass-load-perl.
Preparing to unpack .../067-libclass-load-perl_0.25-2_all.deb ...
Unpacking libclass-load-perl (0.25-2) ...
Selecting previously unselected package libio-stringy-perl.
Preparing to unpack .../068-libio-stringy-perl_2.113-2_all.deb ...
Unpacking libio-stringy-perl (2.113-2) ...
Selecting previously unselected package libparams-validate-perl:amd64.
Preparing to unpack .../069-libparams-validate-perl_1.31-2+b3_amd64.deb ...
Unpacking libparams-validate-perl:amd64 (1.31-2+b3) ...
Selecting previously unselected package libsub-exporter-perl.
Preparing to unpack .../070-libsub-exporter-perl_0.990-1_all.deb ...
Unpacking libsub-exporter-perl (0.990-1) ...
Selecting previously unselected package libgetopt-long-descriptive-perl.
Preparing to unpack .../071-libgetopt-long-descriptive-perl_0.116-2_all.deb ...
Unpacking libgetopt-long-descriptive-perl (0.116-2) ...
Selecting previously unselected package libio-tiecombine-perl.
Preparing to unpack .../072-libio-tiecombine-perl_1.005-3_all.deb ...
Unpacking libio-tiecombine-perl (1.005-3) ...
Selecting previously unselected package libmodule-pluggable-perl.
Preparing to unpack .../073-libmodule-pluggable-perl_5.2-5_all.deb ...
Unpacking libmodule-pluggable-perl (5.2-5) ...
Selecting previously unselected package libstring-rewriteprefix-perl.
Preparing to unpack .../074-libstring-rewriteprefix-perl_0.009-1_all.deb ...
Unpacking libstring-rewriteprefix-perl (0.009-1) ...
Selecting previously unselected package libapp-cmd-perl.
Preparing to unpack .../075-libapp-cmd-perl_0.337-2_all.deb ...
Unpacking libapp-cmd-perl (0.337-2) ...
Selecting previously unselected package libscope-guard-perl.
Preparing to unpack .../076-libscope-guard-perl_0.21-2_all.deb ...
Unpacking libscope-guard-perl (0.21-2) ...
Selecting previously unselected package libautobox-perl.
Preparing to unpack .../077-libautobox-perl_3.0.2-1+b1_amd64.deb ...
Unpacking libautobox-perl (3.0.2-1+b1) ...
Selecting previously unselected package libperlio-utf8-strict-perl.
Preparing to unpack .../078-libperlio-utf8-strict-perl_0.010-1+b3_amd64.deb ...
Unpacking libperlio-utf8-strict-perl (0.010-1+b3) ...
Selecting previously unselected package libmixin-linewise-perl.
Preparing to unpack .../079-libmixin-linewise-perl_0.111-1_all.deb ...
Unpacking libmixin-linewise-perl (0.111-1) ...
Selecting previously unselected package libconfig-ini-perl.
Preparing to unpack .../080-libconfig-ini-perl_1%3a0.029-1_all.deb ...
Unpacking libconfig-ini-perl (1:0.029-1) ...
Selecting previously unselected package libclass-load-xs-perl.
Preparing to unpack .../081-libclass-load-xs-perl_0.10-2+b4_amd64.deb ...
Unpacking libclass-load-xs-perl (0.10-2+b4) ...
Selecting previously unselected package libsub-exporter-progressive-perl.
Preparing to unpack .../082-libsub-exporter-progressive-perl_0.001013-3_all.deb ...
Unpacking libsub-exporter-progressive-perl (0.001013-3) ...
Selecting previously unselected package libdevel-globaldestruction-perl.
Preparing to unpack .../083-libdevel-globaldestruction-perl_0.14-4_all.deb ...
Unpacking libdevel-globaldestruction-perl (0.14-4) ...
Selecting previously unselected package libalgorithm-c3-perl.
Preparing to unpack .../084-libalgorithm-c3-perl_0.11-2_all.deb ...
Unpacking libalgorithm-c3-perl (0.11-2) ...
Selecting previously unselected package libclass-c3-perl.
Preparing to unpack .../085-libclass-c3-perl_0.35-2_all.deb ...
Unpacking libclass-c3-perl (0.35-2) ...
Selecting previously unselected package libmro-compat-perl.
Preparing to unpack .../086-libmro-compat-perl_0.15-2_all.deb ...
Unpacking libmro-compat-perl (0.15-2) ...
Selecting previously unselected package libdevel-overloadinfo-perl.
Preparing to unpack .../087-libdevel-overloadinfo-perl_0.007-1_all.deb ...
Unpacking libdevel-overloadinfo-perl (0.007-1) ...
Selecting previously unselected package libeval-closure-perl.
Preparing to unpack .../088-libeval-closure-perl_0.14-3_all.deb ...
Unpacking libeval-closure-perl (0.14-3) ...
Selecting previously unselected package libdist-checkconflicts-perl.
Preparing to unpack .../089-libdist-checkconflicts-perl_0.11-2_all.deb ...
Unpacking libdist-checkconflicts-perl (0.11-2) ...
Selecting previously unselected package libmodule-runtime-conflicts-perl.
Preparing to unpack .../090-libmodule-runtime-conflicts-perl_0.003-2_all.deb ...
Unpacking libmodule-runtime-conflicts-perl (0.003-2) ...
Selecting previously unselected package libpackage-deprecationmanager-perl.
Preparing to unpack .../091-libpackage-deprecationmanager-perl_0.18-1_all.deb ...
Unpacking libpackage-deprecationmanager-perl (0.18-1) ...
Selecting previously unselected package libpackage-stash-xs-perl:amd64.
Preparing to unpack .../092-libpackage-stash-xs-perl_0.30-1+b4_amd64.deb ...
Unpacking libpackage-stash-xs-perl:amd64 (0.30-1+b4) ...
Selecting previously unselected package libmoose-perl:amd64.
Preparing to unpack .../093-libmoose-perl_2.2207-1+b3_amd64.deb ...
Unpacking libmoose-perl:amd64 (2.2207-1+b3) ...
Selecting previously unselected package libvariable-magic-perl.
Preparing to unpack .../094-libvariable-magic-perl_0.64-1+b1_amd64.deb ...
Unpacking libvariable-magic-perl (0.64-1+b1) ...
Selecting previously unselected package libb-hooks-endofscope-perl.
Preparing to unpack .../095-libb-hooks-endofscope-perl_0.28-1_all.deb ...
Unpacking libb-hooks-endofscope-perl (0.28-1) ...
Selecting previously unselected package libsub-identify-perl.
Preparing to unpack .../096-libsub-identify-perl_0.14-3+b3_amd64.deb ...
Unpacking libsub-identify-perl (0.14-3+b3) ...
Selecting previously unselected package libsub-name-perl:amd64.
Preparing to unpack .../097-libsub-name-perl_0.28-1_amd64.deb ...
Unpacking libsub-name-perl:amd64 (0.28-1) ...
Selecting previously unselected package libnamespace-clean-perl.
Preparing to unpack .../098-libnamespace-clean-perl_0.27-2_all.deb ...
Unpacking libnamespace-clean-perl (0.27-2) ...
Selecting previously unselected package libnamespace-autoclean-perl.
Preparing to unpack .../099-libnamespace-autoclean-perl_0.31-1_all.deb ...
Unpacking libnamespace-autoclean-perl (0.31-1) ...
Selecting previously unselected package libmoosex-role-parameterized-perl.
Preparing to unpack .../100-libmoosex-role-parameterized-perl_1.11-2_all.deb ...
Unpacking libmoosex-role-parameterized-perl (1.11-2) ...
Selecting previously unselected package libmoosex-oneargnew-perl.
Preparing to unpack .../101-libmoosex-oneargnew-perl_0.007-1_all.deb ...
Unpacking libmoosex-oneargnew-perl (0.007-1) ...
Selecting previously unselected package libcpanel-json-xs-perl:amd64.
Preparing to unpack .../102-libcpanel-json-xs-perl_4.39-1_amd64.deb ...
Unpacking libcpanel-json-xs-perl:amd64 (4.39-1) ...
Selecting previously unselected package libjson-maybexs-perl.
Preparing to unpack .../103-libjson-maybexs-perl_1.004008-1_all.deb ...
Unpacking libjson-maybexs-perl (1.004008-1) ...
Selecting previously unselected package libstring-formatter-perl.
Preparing to unpack .../104-libstring-formatter-perl_1.235-1_all.deb ...
Unpacking libstring-formatter-perl (1.235-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../105-libtimedate-perl_2.3300-2_all.deb ...
Unpacking libtimedate-perl (2.3300-2) ...
Selecting previously unselected package libstring-errf-perl.
Preparing to unpack .../106-libstring-errf-perl_0.009-1_all.deb ...
Unpacking libstring-errf-perl (0.009-1) ...
Selecting previously unselected package librole-hasmessage-perl.
Preparing to unpack .../107-librole-hasmessage-perl_0.007-1_all.deb ...
Unpacking librole-hasmessage-perl (0.007-1) ...
Selecting previously unselected package librole-identifiable-perl.
Preparing to unpack .../108-librole-identifiable-perl_0.009-1_all.deb ...
Unpacking librole-identifiable-perl (0.009-1) ...
Selecting previously unselected package libclass-method-modifiers-perl.
Preparing to unpack .../109-libclass-method-modifiers-perl_2.15-1_all.deb ...
Unpacking libclass-method-modifiers-perl (2.15-1) ...
Selecting previously unselected package libclass-xsaccessor-perl.
Preparing to unpack .../110-libclass-xsaccessor-perl_1.19-4+b5_amd64.deb ...
Unpacking libclass-xsaccessor-perl (1.19-4+b5) ...
Selecting previously unselected package libimport-into-perl.
Preparing to unpack .../111-libimport-into-perl_1.002005-2_all.deb ...
Unpacking libimport-into-perl (1.002005-2) ...
Selecting previously unselected package librole-tiny-perl.
Preparing to unpack .../112-librole-tiny-perl_2.002004-1_all.deb ...
Unpacking librole-tiny-perl (2.002004-1) ...
Selecting previously unselected package libsub-quote-perl.
Preparing to unpack .../113-libsub-quote-perl_2.006008-1_all.deb ...
Unpacking libsub-quote-perl (2.006008-1) ...
Selecting previously unselected package libmoo-perl.
Preparing to unpack .../114-libmoo-perl_2.005005-1_all.deb ...
Unpacking libmoo-perl (2.005005-1) ...
Selecting previously unselected package libthrowable-perl.
Preparing to unpack .../115-libthrowable-perl_1.001-2_all.deb ...
Unpacking libthrowable-perl (1.001-2) ...
Selecting previously unselected package libtie-ixhash-perl.
Preparing to unpack .../116-libtie-ixhash-perl_1.23-4_all.deb ...
Unpacking libtie-ixhash-perl (1.23-4) ...
Selecting previously unselected package libconfig-mvp-perl.
Preparing to unpack .../117-libconfig-mvp-perl_2.200013-1_all.deb ...
Unpacking libconfig-mvp-perl (2.200013-1) ...
Selecting previously unselected package libconfig-mvp-reader-ini-perl.
Preparing to unpack .../118-libconfig-mvp-reader-ini-perl_2.101465-1_all.deb ...
Unpacking libconfig-mvp-reader-ini-perl (2.101465-1) ...
Selecting previously unselected package perl-openssl-defaults:amd64.
Preparing to unpack .../119-perl-openssl-defaults_7+b2_amd64.deb ...
Unpacking perl-openssl-defaults:amd64 (7+b2) ...
Selecting previously unselected package libnet-ssleay-perl:amd64.
Preparing to unpack .../120-libnet-ssleay-perl_1.94-3_amd64.deb ...
Unpacking libnet-ssleay-perl:amd64 (1.94-3) ...
Selecting previously unselected package libio-socket-ssl-perl.
Preparing to unpack .../121-libio-socket-ssl-perl_2.089-1_all.deb ...
Unpacking libio-socket-ssl-perl (2.089-1) ...
Selecting previously unselected package liburi-perl.
Preparing to unpack .../122-liburi-perl_5.30-1_all.deb ...
Unpacking liburi-perl (5.30-1) ...
Selecting previously unselected package libnet-http-perl.
Preparing to unpack .../123-libnet-http-perl_6.23-1_all.deb ...
Unpacking libnet-http-perl (6.23-1) ...
Selecting previously unselected package libencode-locale-perl.
Preparing to unpack .../124-libencode-locale-perl_1.05-3_all.deb ...
Unpacking libencode-locale-perl (1.05-3) ...
Selecting previously unselected package libhttp-date-perl.
Preparing to unpack .../125-libhttp-date-perl_6.06-1_all.deb ...
Unpacking libhttp-date-perl (6.06-1) ...
Selecting previously unselected package libfile-listing-perl.
Preparing to unpack .../126-libfile-listing-perl_6.16-1_all.deb ...
Unpacking libfile-listing-perl (6.16-1) ...
Selecting previously unselected package libhtml-tagset-perl.
Preparing to unpack .../127-libhtml-tagset-perl_3.24-1_all.deb ...
Unpacking libhtml-tagset-perl (3.24-1) ...
Selecting previously unselected package libhtml-parser-perl:amd64.
Preparing to unpack .../128-libhtml-parser-perl_3.83-1+b2_amd64.deb ...
Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ...
Selecting previously unselected package libhtml-tree-perl.
Preparing to unpack .../129-libhtml-tree-perl_5.07-3_all.deb ...
Unpacking libhtml-tree-perl (5.07-3) ...
Selecting previously unselected package libclone-perl:amd64.
Preparing to unpack .../130-libclone-perl_0.47-1+b1_amd64.deb ...
Unpacking libclone-perl:amd64 (0.47-1+b1) ...
Selecting previously unselected package libio-html-perl.
Preparing to unpack .../131-libio-html-perl_1.004-3_all.deb ...
Unpacking libio-html-perl (1.004-3) ...
Selecting previously unselected package liblwp-mediatypes-perl.
Preparing to unpack .../132-liblwp-mediatypes-perl_6.04-2_all.deb ...
Unpacking liblwp-mediatypes-perl (6.04-2) ...
Selecting previously unselected package libhttp-message-perl.
Preparing to unpack .../133-libhttp-message-perl_7.00-2_all.deb ...
Unpacking libhttp-message-perl (7.00-2) ...
Selecting previously unselected package libhttp-cookies-perl.
Preparing to unpack .../134-libhttp-cookies-perl_6.11-1_all.deb ...
Unpacking libhttp-cookies-perl (6.11-1) ...
Selecting previously unselected package libhttp-negotiate-perl.
Preparing to unpack .../135-libhttp-negotiate-perl_6.01-2_all.deb ...
Unpacking libhttp-negotiate-perl (6.01-2) ...
Selecting previously unselected package libwww-robotrules-perl.
Preparing to unpack .../136-libwww-robotrules-perl_6.02-1_all.deb ...
Unpacking libwww-robotrules-perl (6.02-1) ...
Selecting previously unselected package libwww-perl.
Preparing to unpack .../137-libwww-perl_6.77-1_all.deb ...
Unpacking libwww-perl (6.77-1) ...
Selecting previously unselected package liblwp-protocol-https-perl.
Preparing to unpack .../138-liblwp-protocol-https-perl_6.14-1_all.deb ...
Unpacking liblwp-protocol-https-perl (6.14-1) ...
Selecting previously unselected package libterm-readkey-perl.
Preparing to unpack .../139-libterm-readkey-perl_2.38-2+b4_amd64.deb ...
Unpacking libterm-readkey-perl (2.38-2+b4) ...
Selecting previously unselected package libcpan-uploader-perl.
Preparing to unpack .../140-libcpan-uploader-perl_0.103018-1_all.deb ...
Unpacking libcpan-uploader-perl (0.103018-1) ...
Selecting previously unselected package libdata-section-perl.
Preparing to unpack .../141-libdata-section-perl_0.200008-1_all.deb ...
Unpacking libdata-section-perl (0.200008-1) ...
Selecting previously unselected package libclass-inspector-perl.
Preparing to unpack .../142-libclass-inspector-perl_1.36-3_all.deb ...
Unpacking libclass-inspector-perl (1.36-3) ...
Selecting previously unselected package libfile-sharedir-perl.
Preparing to unpack .../143-libfile-sharedir-perl_1.118-3_all.deb ...
Unpacking libfile-sharedir-perl (1.118-3) ...
Selecting previously unselected package libparams-validationcompiler-perl.
Preparing to unpack .../144-libparams-validationcompiler-perl_0.31-1_all.deb ...
Unpacking libparams-validationcompiler-perl (0.31-1) ...
Selecting previously unselected package libxstring-perl:amd64.
Preparing to unpack .../145-libxstring-perl_0.005-2+b4_amd64.deb ...
Unpacking libxstring-perl:amd64 (0.005-2+b4) ...
Selecting previously unselected package libspecio-perl.
Preparing to unpack .../146-libspecio-perl_0.49-1_all.deb ...
Unpacking libspecio-perl (0.49-1) ...
Selecting previously unselected package libdatetime-locale-perl.
Preparing to unpack .../147-libdatetime-locale-perl_1%3a1.41-1_all.deb ...
Unpacking libdatetime-locale-perl (1:1.41-1) ...
Selecting previously unselected package libclass-singleton-perl.
Preparing to unpack .../148-libclass-singleton-perl_1.6-2_all.deb ...
Unpacking libclass-singleton-perl (1.6-2) ...
Selecting previously unselected package libdatetime-timezone-perl.
Preparing to unpack .../149-libdatetime-timezone-perl_1%3a2.64-1+2025a_all.deb ...
Unpacking libdatetime-timezone-perl (1:2.64-1+2025a) ...
Selecting previously unselected package libdatetime-perl.
Preparing to unpack .../150-libdatetime-perl_2%3a1.65-1+b2_amd64.deb ...
Unpacking libdatetime-perl (2:1.65-1+b2) ...
Selecting previously unselected package libfile-copy-recursive-perl.
Preparing to unpack .../151-libfile-copy-recursive-perl_0.45-4_all.deb ...
Unpacking libfile-copy-recursive-perl (0.45-4) ...
Selecting previously unselected package libnumber-compare-perl.
Preparing to unpack .../152-libnumber-compare-perl_0.03-3_all.deb ...
Unpacking libnumber-compare-perl (0.03-3) ...
Selecting previously unselected package libtext-glob-perl.
Preparing to unpack .../153-libtext-glob-perl_0.11-3_all.deb ...
Unpacking libtext-glob-perl (0.11-3) ...
Selecting previously unselected package libfile-find-rule-perl.
Preparing to unpack .../154-libfile-find-rule-perl_0.34-3_all.deb ...
Unpacking libfile-find-rule-perl (0.34-3) ...
Selecting previously unselected package libfile-pushd-perl.
Preparing to unpack .../155-libfile-pushd-perl_1.016-2_all.deb ...
Unpacking libfile-pushd-perl (1.016-2) ...
Selecting previously unselected package libfile-sharedir-install-perl.
Preparing to unpack .../156-libfile-sharedir-install-perl_0.14-2_all.deb ...
Unpacking libfile-sharedir-install-perl (0.14-2) ...
Selecting previously unselected package libhash-merge-simple-perl.
Preparing to unpack .../157-libhash-merge-simple-perl_0.052-1_all.deb ...
Unpacking libhash-merge-simple-perl (0.052-1) ...
Selecting previously unselected package libjson-perl.
Preparing to unpack .../158-libjson-perl_4.10000-1_all.deb ...
Unpacking libjson-perl (4.10000-1) ...
Selecting previously unselected package liblog-dispatch-perl.
Preparing to unpack .../159-liblog-dispatch-perl_2.71-1_all.deb ...
Unpacking liblog-dispatch-perl (2.71-1) ...
Selecting previously unselected package liblog-dispatch-array-perl.
Preparing to unpack .../160-liblog-dispatch-array-perl_1.005-1_all.deb ...
Unpacking liblog-dispatch-array-perl (1.005-1) ...
Selecting previously unselected package libstring-flogger-perl.
Preparing to unpack .../161-libstring-flogger-perl_1.101246-1_all.deb ...
Unpacking libstring-flogger-perl (1.101246-1) ...
Selecting previously unselected package libsub-exporter-globexporter-perl.
Preparing to unpack .../162-libsub-exporter-globexporter-perl_0.006-1_all.deb ...
Unpacking libsub-exporter-globexporter-perl (0.006-1) ...
Selecting previously unselected package liblog-dispatchouli-perl.
Preparing to unpack .../163-liblog-dispatchouli-perl_3.009-1_all.deb ...
Unpacking liblog-dispatchouli-perl (3.009-1) ...
Selecting previously unselected package libexporter-tiny-perl.
Preparing to unpack .../164-libexporter-tiny-perl_1.006002-1_all.deb ...
Unpacking libexporter-tiny-perl (1.006002-1) ...
Selecting previously unselected package liblist-moreutils-xs-perl.
Preparing to unpack .../165-liblist-moreutils-xs-perl_0.430-4+b2_amd64.deb ...
Unpacking liblist-moreutils-xs-perl (0.430-4+b2) ...
Selecting previously unselected package liblist-moreutils-perl.
Preparing to unpack .../166-liblist-moreutils-perl_0.430-2_all.deb ...
Unpacking liblist-moreutils-perl (0.430-2) ...
Selecting previously unselected package libsyntax-keyword-junction-perl.
Preparing to unpack .../167-libsyntax-keyword-junction-perl_0.003009-1_all.deb ...
Unpacking libsyntax-keyword-junction-perl (0.003009-1) ...
Selecting previously unselected package libmoose-autobox-perl.
Preparing to unpack .../168-libmoose-autobox-perl_0.16-2_all.deb ...
Unpacking libmoose-autobox-perl (0.16-2) ...
Selecting previously unselected package libaliased-perl.
Preparing to unpack .../169-libaliased-perl_0.34-3_all.deb ...
Unpacking libaliased-perl (0.34-3) ...
Selecting previously unselected package libmoosex-lazyrequire-perl.
Preparing to unpack .../170-libmoosex-lazyrequire-perl_0.11-2_all.deb ...
Unpacking libmoosex-lazyrequire-perl (0.11-2) ...
Selecting previously unselected package libmoosex-setonce-perl.
Preparing to unpack .../171-libmoosex-setonce-perl_0.200002-2_all.deb ...
Unpacking libmoosex-setonce-perl (0.200002-2) ...
Selecting previously unselected package libcarp-clan-perl.
Preparing to unpack .../172-libcarp-clan-perl_6.08-2_all.deb ...
Unpacking libcarp-clan-perl (6.08-2) ...
Selecting previously unselected package libsub-exporter-formethods-perl.
Preparing to unpack .../173-libsub-exporter-formethods-perl_0.100055-1_all.deb ...
Unpacking libsub-exporter-formethods-perl (0.100055-1) ...
Selecting previously unselected package libmoosex-types-perl.
Preparing to unpack .../174-libmoosex-types-perl_0.50-2_all.deb ...
Unpacking libmoosex-types-perl (0.50-2) ...
Selecting previously unselected package libmoosex-types-perl-perl.
Preparing to unpack .../175-libmoosex-types-perl-perl_0.101344-1_all.deb ...
Unpacking libmoosex-types-perl-perl (0.101344-1) ...
Selecting previously unselected package libpath-tiny-perl.
Preparing to unpack .../176-libpath-tiny-perl_0.146-1_all.deb ...
Unpacking libpath-tiny-perl (0.146-1) ...
Selecting previously unselected package libmodule-path-perl.
Preparing to unpack .../177-libmodule-path-perl_0.19-3_all.deb ...
Unpacking libmodule-path-perl (0.19-3) ...
Selecting previously unselected package libsafe-isa-perl.
Preparing to unpack .../178-libsafe-isa-perl_1.000010-1_all.deb ...
Unpacking libsafe-isa-perl (1.000010-1) ...
Selecting previously unselected package libtask-weaken-perl.
Preparing to unpack .../179-libtask-weaken-perl_1.06-2_all.deb ...
Unpacking libtask-weaken-perl (1.06-2) ...
Selecting previously unselected package libyaml-pp-perl.
Preparing to unpack .../180-libyaml-pp-perl_0.39.0-1_all.deb ...
Unpacking libyaml-pp-perl (0.39.0-1) ...
Selecting previously unselected package libppi-perl.
Preparing to unpack .../181-libppi-perl_1.281-1_all.deb ...
Unpacking libppi-perl (1.281-1) ...
Selecting previously unselected package libtype-tiny-perl.
Preparing to unpack .../182-libtype-tiny-perl_2.004000-1_all.deb ...
Unpacking libtype-tiny-perl (2.004000-1) ...
Selecting previously unselected package libperl-prereqscanner-perl.
Preparing to unpack .../183-libperl-prereqscanner-perl_1.100-1_all.deb ...
Unpacking libperl-prereqscanner-perl (1.100-1) ...
Selecting previously unselected package libperl-version-perl.
Preparing to unpack .../184-libperl-version-perl_1.018-1_all.deb ...
Unpacking libperl-version-perl (1.018-1) ...
Selecting previously unselected package libtext-template-perl.
Preparing to unpack .../185-libtext-template-perl_1.61-1_all.deb ...
Unpacking libtext-template-perl (1.61-1) ...
Selecting previously unselected package libsoftware-license-perl.
Preparing to unpack .../186-libsoftware-license-perl_0.104006-1_all.deb ...
Unpacking libsoftware-license-perl (0.104006-1) ...
Selecting previously unselected package libterm-encoding-perl.
Preparing to unpack .../187-libterm-encoding-perl_0.03-2_all.deb ...
Unpacking libterm-encoding-perl (0.03-2) ...
Selecting previously unselected package libyaml-tiny-perl.
Preparing to unpack .../188-libyaml-tiny-perl_1.76-1_all.deb ...
Unpacking libyaml-tiny-perl (1.76-1) ...
Selecting previously unselected package libdist-zilla-perl.
Preparing to unpack .../189-libdist-zilla-perl_6.032-1_all.deb ...
Unpacking libdist-zilla-perl (6.032-1) ...
Selecting previously unselected package dh-dist-zilla.
Preparing to unpack .../190-dh-dist-zilla_1.4.1_all.deb ...
Unpacking dh-dist-zilla (1.4.1) ...
Selecting previously unselected package fasttree.
Preparing to unpack .../191-fasttree_2.1.11-2_amd64.deb ...
Unpacking fasttree (2.1.11-2) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../192-libbrotli1_1.1.0-2+b6_amd64.deb ...
Unpacking libbrotli1:amd64 (1.1.0-2+b6) ...
Selecting previously unselected package libpng16-16t64:amd64.
Preparing to unpack .../193-libpng16-16t64_1.6.46-4_amd64.deb ...
Unpacking libpng16-16t64:amd64 (1.6.46-4) ...
Selecting previously unselected package libfreetype6:amd64.
Preparing to unpack .../194-libfreetype6_2.13.3+dfsg-1_amd64.deb ...
Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../195-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../196-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../197-fontconfig-config_2.15.0-2_amd64.deb ...
Unpacking fontconfig-config (2.15.0-2) ...
Selecting previously unselected package libfontconfig1:amd64.
Preparing to unpack .../198-libfontconfig1_2.15.0-2_amd64.deb ...
Unpacking libfontconfig1:amd64 (2.15.0-2) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../199-fontconfig_2.15.0-2_amd64.deb ...
Unpacking fontconfig (2.15.0-2) ...
Selecting previously unselected package libarray-utils-perl.
Preparing to unpack .../200-libarray-utils-perl_0.5-3_all.deb ...
Unpacking libarray-utils-perl (0.5-3) ...
Selecting previously unselected package libblas3:amd64.
Preparing to unpack .../201-libblas3_3.12.1-2_amd64.deb ...
Unpacking libblas3:amd64 (3.12.1-2) ...
Selecting previously unselected package libpixman-1-0:amd64.
Preparing to unpack .../202-libpixman-1-0_0.44.0-3_amd64.deb ...
Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
Selecting previously unselected package libxau6:amd64.
Preparing to unpack .../203-libxau6_1%3a1.0.11-1_amd64.deb ...
Unpacking libxau6:amd64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:amd64.
Preparing to unpack .../204-libxdmcp6_1%3a1.1.5-1_amd64.deb ...
Unpacking libxdmcp6:amd64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:amd64.
Preparing to unpack .../205-libxcb1_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb1:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../206-libx11-data_2%3a1.8.10-2_all.deb ...
Unpacking libx11-data (2:1.8.10-2) ...
Selecting previously unselected package libx11-6:amd64.
Preparing to unpack .../207-libx11-6_2%3a1.8.10-2_amd64.deb ...
Unpacking libx11-6:amd64 (2:1.8.10-2) ...
Selecting previously unselected package libxcb-render0:amd64.
Preparing to unpack .../208-libxcb-render0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:amd64.
Preparing to unpack .../209-libxcb-shm0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxext6:amd64.
Preparing to unpack .../210-libxext6_2%3a1.3.4-1+b3_amd64.deb ...
Unpacking libxext6:amd64 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxrender1:amd64.
Preparing to unpack .../211-libxrender1_1%3a0.9.10-1.1+b4_amd64.deb ...
Unpacking libxrender1:amd64 (1:0.9.10-1.1+b4) ...
Selecting previously unselected package libcairo2:amd64.
Preparing to unpack .../212-libcairo2_1.18.2-2_amd64.deb ...
Unpacking libcairo2:amd64 (1.18.2-2) ...
Selecting previously unselected package libcom-err2:amd64.
Preparing to unpack .../213-libcom-err2_1.47.2-1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-1) ...
Selecting previously unselected package libconst-fast-perl.
Preparing to unpack .../214-libconst-fast-perl_0.014-2_all.deb ...
Unpacking libconst-fast-perl (0.014-2) ...
Selecting previously unselected package libkrb5support0:amd64.
Preparing to unpack .../215-libkrb5support0_1.21.3-4_amd64.deb ...
Unpacking libkrb5support0:amd64 (1.21.3-4) ...
Selecting previously unselected package libk5crypto3:amd64.
Preparing to unpack .../216-libk5crypto3_1.21.3-4_amd64.deb ...
Unpacking libk5crypto3:amd64 (1.21.3-4) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../217-libkeyutils1_1.6.3-4_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:amd64.
Preparing to unpack .../218-libkrb5-3_1.21.3-4_amd64.deb ...
Unpacking libkrb5-3:amd64 (1.21.3-4) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../219-libgssapi-krb5-2_1.21.3-4_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ...
Selecting previously unselected package libidn2-0:amd64.
Preparing to unpack .../220-libidn2-0_2.3.7-2+b1_amd64.deb ...
Unpacking libidn2-0:amd64 (2.3.7-2+b1) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
Preparing to unpack .../221-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libsasl2-2:amd64.
Preparing to unpack .../222-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libldap2:amd64.
Preparing to unpack .../223-libldap2_2.6.9+dfsg-1_amd64.deb ...
Unpacking libldap2:amd64 (2.6.9+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:amd64.
Preparing to unpack .../224-libnghttp2-14_1.64.0-1_amd64.deb ...
Unpacking libnghttp2-14:amd64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-9:amd64.
Preparing to unpack .../225-libnghttp3-9_1.6.0-2_amd64.deb ...
Unpacking libnghttp3-9:amd64 (1.6.0-2) ...
Selecting previously unselected package libpsl5t64:amd64.
Preparing to unpack .../226-libpsl5t64_0.21.2-1.1+b1_amd64.deb ...
Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Selecting previously unselected package libp11-kit0:amd64.
Preparing to unpack .../227-libp11-kit0_0.25.5-3_amd64.deb ...
Unpacking libp11-kit0:amd64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:amd64.
Preparing to unpack .../228-libtasn1-6_4.20.0-2_amd64.deb ...
Unpacking libtasn1-6:amd64 (4.20.0-2) ...
Selecting previously unselected package libgnutls30t64:amd64.
Preparing to unpack .../229-libgnutls30t64_3.8.9-2_amd64.deb ...
Unpacking libgnutls30t64:amd64 (3.8.9-2) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../230-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:amd64.
Preparing to unpack .../231-libssh2-1t64_1.11.1-1_amd64.deb ...
Unpacking libssh2-1t64:amd64 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:amd64.
Preparing to unpack .../232-libcurl4t64_8.12.1-2_amd64.deb ...
Unpacking libcurl4t64:amd64 (8.12.1-2) ...
Selecting previously unselected package libdata-compare-perl.
Preparing to unpack .../233-libdata-compare-perl_1.29-1_all.deb ...
Unpacking libdata-compare-perl (1.29-1) ...
Selecting previously unselected package libdatrie1:amd64.
Preparing to unpack .../234-libdatrie1_0.2.13-3+b1_amd64.deb ...
Unpacking libdatrie1:amd64 (0.2.13-3+b1) ...
Selecting previously unselected package libdeflate0:amd64.
Preparing to unpack .../235-libdeflate0_1.23-1+b1_amd64.deb ...
Unpacking libdeflate0:amd64 (1.23-1+b1) ...
Selecting previously unselected package libpod-eventual-perl.
Preparing to unpack .../236-libpod-eventual-perl_0.094003-1_all.deb ...
Unpacking libpod-eventual-perl (0.094003-1) ...
Selecting previously unselected package libstring-truncate-perl.
Preparing to unpack .../237-libstring-truncate-perl_1.100603-1_all.deb ...
Unpacking libstring-truncate-perl (1.100603-1) ...
Selecting previously unselected package libpod-elemental-perl.
Preparing to unpack .../238-libpod-elemental-perl_0.103006-1_all.deb ...
Unpacking libpod-elemental-perl (0.103006-1) ...
Selecting previously unselected package libpod-elemental-perlmunger-perl.
Preparing to unpack .../239-libpod-elemental-perlmunger-perl_0.200007-1_all.deb ...
Unpacking libpod-elemental-perlmunger-perl (0.200007-1) ...
Selecting previously unselected package libpod-weaver-perl.
Preparing to unpack .../240-libpod-weaver-perl_4.020-1_all.deb ...
Unpacking libpod-weaver-perl (4.020-1) ...
Selecting previously unselected package libdist-zilla-plugin-podweaver-perl.
Preparing to unpack .../241-libdist-zilla-plugin-podweaver-perl_4.010-1_all.deb ...
Unpacking libdist-zilla-plugin-podweaver-perl (4.010-1) ...
Selecting previously unselected package libenv-path-perl.
Preparing to unpack .../242-libenv-path-perl_0.19-4_all.deb ...
Unpacking libenv-path-perl (0.19-4) ...
Selecting previously unselected package libfile-chdir-perl.
Preparing to unpack .../243-libfile-chdir-perl_0.1008-1.2_all.deb ...
Unpacking libfile-chdir-perl (0.1008-1.2) ...
Selecting previously unselected package libfile-grep-perl.
Preparing to unpack .../244-libfile-grep-perl_0.02-3_all.deb ...
Unpacking libfile-grep-perl (0.02-3) ...
Selecting previously unselected package libfile-slurper-perl.
Preparing to unpack .../245-libfile-slurper-perl_0.014-1_all.deb ...
Unpacking libfile-slurper-perl (0.014-1) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../246-libfile-which-perl_1.27-2_all.deb ...
Unpacking libfile-which-perl (1.27-2) ...
Selecting previously unselected package libfindbin-libs-perl.
Preparing to unpack .../247-libfindbin-libs-perl_3.0.2-1_all.deb ...
Unpacking libfindbin-libs-perl (3.0.2-1) ...
Selecting previously unselected package libfribidi0:amd64.
Preparing to unpack .../248-libfribidi0_1.0.16-1_amd64.deb ...
Unpacking libfribidi0:amd64 (1.0.16-1) ...
Selecting previously unselected package libgfortran5:amd64.
Preparing to unpack .../249-libgfortran5_14.2.0-16_amd64.deb ...
Unpacking libgfortran5:amd64 (14.2.0-16) ...
Selecting previously unselected package libglib2.0-0t64:amd64.
Preparing to unpack .../250-libglib2.0-0t64_2.83.3-2_amd64.deb ...
Unpacking libglib2.0-0t64:amd64 (2.83.3-2) ...
Selecting previously unselected package libheap-perl.
Preparing to unpack .../251-libheap-perl_0.80-5_all.deb ...
Unpacking libheap-perl (0.80-5) ...
Selecting previously unselected package libset-object-perl.
Preparing to unpack .../252-libset-object-perl_1.42-1+b5_amd64.deb ...
Unpacking libset-object-perl (1.42-1+b5) ...
Selecting previously unselected package libgraph-perl.
Preparing to unpack .../253-libgraph-perl_1%3a0.9733-1_all.deb ...
Unpacking libgraph-perl (1:0.9733-1) ...
Selecting previously unselected package libspiffy-perl.
Preparing to unpack .../254-libspiffy-perl_0.46-1_all.deb ...
Unpacking libspiffy-perl (0.46-1) ...
Selecting previously unselected package libio-all-perl.
Preparing to unpack .../255-libio-all-perl_0.87-2_all.deb ...
Unpacking libio-all-perl (0.87-2) ...
Selecting previously unselected package libparse-yapp-perl.
Preparing to unpack .../256-libparse-yapp-perl_1.21-4_all.deb ...
Unpacking libparse-yapp-perl (1.21-4) ...
Selecting previously unselected package libxml-parser-perl.
Preparing to unpack .../257-libxml-parser-perl_2.47-1+b3_amd64.deb ...
Unpacking libxml-parser-perl (2.47-1+b3) ...
Selecting previously unselected package libxml-writer-perl.
Preparing to unpack .../258-libxml-writer-perl_0.900-2_all.deb ...
Unpacking libxml-writer-perl (0.900-2) ...
Selecting previously unselected package libgraph-readwrite-perl.
Preparing to unpack .../259-libgraph-readwrite-perl_2.10-1_all.deb ...
Unpacking libgraph-readwrite-perl (2.10-1) ...
Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../260-libgraphite2-3_1.3.14-2+b1_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../261-libharfbuzz0b_10.2.0-1_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../262-x11-common_1%3a7.7+24_all.deb ...
Unpacking x11-common (1:7.7+24) ...
Selecting previously unselected package libice6:amd64.
Preparing to unpack .../263-libice6_2%3a1.1.1-1_amd64.deb ...
Unpacking libice6:amd64 (2:1.1.1-1) ...
Selecting previously unselected package libjbig0:amd64.
Preparing to unpack .../264-libjbig0_2.1-6.1+b2_amd64.deb ...
Unpacking libjbig0:amd64 (2.1-6.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:amd64.
Preparing to unpack .../265-libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb ...
Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ...
Selecting previously unselected package liblapack3:amd64.
Preparing to unpack .../266-liblapack3_3.12.1-2_amd64.deb ...
Unpacking liblapack3:amd64 (3.12.1-2) ...
Selecting previously unselected package liblerc4:amd64.
Preparing to unpack .../267-liblerc4_4.0.0+ds-5_amd64.deb ...
Unpacking liblerc4:amd64 (4.0.0+ds-5) ...
Selecting previously unselected package liblmdb0:amd64.
Preparing to unpack .../268-liblmdb0_0.9.31-1+b2_amd64.deb ...
Unpacking liblmdb0:amd64 (0.9.31-1+b2) ...
Selecting previously unselected package liblog-log4perl-perl.
Preparing to unpack .../269-liblog-log4perl-perl_1.57-1_all.deb ...
Unpacking liblog-log4perl-perl (1.57-1) ...
Selecting previously unselected package libmbedcrypto16:amd64.
Preparing to unpack .../270-libmbedcrypto16_3.6.2-3_amd64.deb ...
Unpacking libmbedcrypto16:amd64 (3.6.2-3) ...
Selecting previously unselected package libmbedx509-7:amd64.
Preparing to unpack .../271-libmbedx509-7_3.6.2-3_amd64.deb ...
Unpacking libmbedx509-7:amd64 (3.6.2-3) ...
Selecting previously unselected package libmbedtls21:amd64.
Preparing to unpack .../272-libmbedtls21_3.6.2-3_amd64.deb ...
Unpacking libmbedtls21:amd64 (3.6.2-3) ...
Selecting previously unselected package libpadwalker-perl.
Preparing to unpack .../273-libpadwalker-perl_2.5-1+b6_amd64.deb ...
Unpacking libpadwalker-perl (2.5-1+b6) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../274-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libthai0:amd64.
Preparing to unpack .../275-libthai0_0.1.29-2+b1_amd64.deb ...
Unpacking libthai0:amd64 (0.1.29-2+b1) ...
Selecting previously unselected package libpango-1.0-0:amd64.
Preparing to unpack .../276-libpango-1.0-0_1.56.1-1_amd64.deb ...
Unpacking libpango-1.0-0:amd64 (1.56.1-1) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../277-libpangoft2-1.0-0_1.56.1-1_amd64.deb ...
Unpacking libpangoft2-1.0-0:amd64 (1.56.1-1) ...
Selecting previously unselected package libpangocairo-1.0-0:amd64.
Preparing to unpack .../278-libpangocairo-1.0-0_1.56.1-1_amd64.deb ...
Unpacking libpangocairo-1.0-0:amd64 (1.56.1-1) ...
Selecting previously unselected package libpaper2:amd64.
Preparing to unpack .../279-libpaper2_2.2.5-0.3+b1_amd64.deb ...
Unpacking libpaper2:amd64 (2.2.5-0.3+b1) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../280-libpaper-utils_2.2.5-0.3+b1_amd64.deb ...
Unpacking libpaper-utils (2.2.5-0.3+b1) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../281-libsensors-config_1%3a3.6.0-10_all.deb ...
Unpacking libsensors-config (1:3.6.0-10) ...
Selecting previously unselected package libsensors5:amd64.
Preparing to unpack .../282-libsensors5_1%3a3.6.0-10+b1_amd64.deb ...
Unpacking libsensors5:amd64 (1:3.6.0-10+b1) ...
Selecting previously unselected package libsharpyuv0:amd64.
Preparing to unpack .../283-libsharpyuv0_1.5.0-0.1_amd64.deb ...
Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libsm6:amd64.
Preparing to unpack .../284-libsm6_2%3a1.2.4-1_amd64.deb ...
Unpacking libsm6:amd64 (2:1.2.4-1) ...
Selecting previously unselected package libtcl8.6:amd64.
Preparing to unpack .../285-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Selecting previously unselected package libtest-file-perl.
Preparing to unpack .../286-libtest-file-perl_1.994-1_all.deb ...
Unpacking libtest-file-perl (1.994-1) ...
Selecting previously unselected package libtest2-suite-perl.
Preparing to unpack .../287-libtest2-suite-perl_0.000163-1_all.deb ...
Unpacking libtest2-suite-perl (0.000163-1) ...
Selecting previously unselected package libtest-files-perl.
Preparing to unpack .../288-libtest-files-perl_0.26-1_all.deb ...
Unpacking libtest-files-perl (0.26-1) ...
Selecting previously unselected package libtest-output-perl.
Preparing to unpack .../289-libtest-output-perl_1.035-1_all.deb ...
Unpacking libtest-output-perl (1.035-1) ...
Selecting previously unselected package libtext-csv-perl.
Preparing to unpack .../290-libtext-csv-perl_2.05-1_all.deb ...
Unpacking libtext-csv-perl (2.05-1) ...
Selecting previously unselected package libwebp7:amd64.
Preparing to unpack .../291-libwebp7_1.5.0-0.1_amd64.deb ...
Unpacking libwebp7:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libtiff6:amd64.
Preparing to unpack .../292-libtiff6_4.5.1+git230720-5_amd64.deb ...
Unpacking libtiff6:amd64 (4.5.1+git230720-5) ...
Selecting previously unselected package libtingea0:amd64.
Preparing to unpack .../293-libtingea0_21-361-2+b2_amd64.deb ...
Unpacking libtingea0:amd64 (21-361-2+b2) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../294-libtirpc-common_1.3.4+ds-1.3_all.deb ...
Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:amd64.
Preparing to unpack .../295-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libxft2:amd64.
Preparing to unpack .../296-libxft2_2.3.6-1+b4_amd64.deb ...
Unpacking libxft2:amd64 (2.3.6-1+b4) ...
Selecting previously unselected package libxss1:amd64.
Preparing to unpack .../297-libxss1_1%3a1.2.3-1+b3_amd64.deb ...
Unpacking libxss1:amd64 (1:1.2.3-1+b3) ...
Selecting previously unselected package libtk8.6:amd64.
Preparing to unpack .../298-libtk8.6_8.6.16-1_amd64.deb ...
Unpacking libtk8.6:amd64 (8.6.16-1) ...
Selecting previously unselected package libuv1t64:amd64.
Preparing to unpack .../299-libuv1t64_1.50.0-2_amd64.deb ...
Unpacking libuv1t64:amd64 (1.50.0-2) ...
Selecting previously unselected package libxt6t64:amd64.
Preparing to unpack .../300-libxt6t64_1%3a1.2.1-1.2+b2_amd64.deb ...
Unpacking libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Selecting previously unselected package mafft.
Preparing to unpack .../301-mafft_7.505-1_amd64.deb ...
Unpacking mafft (7.505-1) ...
Selecting previously unselected package mcl.
Preparing to unpack .../302-mcl_1%3a22-282+ds-4_amd64.deb ...
Unpacking mcl (1:22-282+ds-4) ...
Selecting previously unselected package ncbi-data.
Preparing to unpack .../303-ncbi-data_6.1.20170106+dfsg2-5_all.deb ...
Unpacking ncbi-data (6.1.20170106+dfsg2-5) ...
Selecting previously unselected package ncbi-blast+.
Preparing to unpack .../304-ncbi-blast+_2.16.0+ds-6+b1_amd64.deb ...
Unpacking ncbi-blast+ (2.16.0+ds-6+b1) ...
Selecting previously unselected package sysstat.
Preparing to unpack .../305-sysstat_12.7.5-2_amd64.deb ...
Unpacking sysstat (12.7.5-2) ...
Selecting previously unselected package parallel.
Preparing to unpack .../306-parallel_20240222+ds-2_all.deb ...
Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel'
Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel'
Unpacking parallel (20240222+ds-2) ...
Selecting previously unselected package prank.
Preparing to unpack .../307-prank_0.0.170427+dfsg-3_amd64.deb ...
Unpacking prank (0.0.170427+dfsg-3) ...
Selecting previously unselected package zip.
Preparing to unpack .../308-zip_3.0-14_amd64.deb ...
Unpacking zip (3.0-14) ...
Selecting previously unselected package unzip.
Preparing to unpack .../309-unzip_6.0-28_amd64.deb ...
Unpacking unzip (6.0-28) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../310-xdg-utils_1.2.1-2_all.deb ...
Unpacking xdg-utils (1.2.1-2) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../311-r-base-core_4.4.2-1_amd64.deb ...
Unpacking r-base-core (4.4.2-1) ...
Setting up cd-hit (4.8.1-4) ...
Setting up libarray-utils-perl (0.5-3) ...
Setting up media-types (10.1.0) ...
Setting up libmodule-pluggable-perl (5.2-5) ...
Setting up libpipeline1:amd64 (1.5.8-1) ...
Setting up liblmdb0:amd64 (0.9.31-1+b2) ...
Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ...
Setting up libfile-sharedir-install-perl (0.14-2) ...
Setting up ncbi-data (6.1.20170106+dfsg2-5) ...
Setting up libpixman-1-0:amd64 (0.44.0-3) ...
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
Setting up libfile-slurper-perl (0.014-1) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:amd64 (1:1.0.11-1) ...
Setting up libxdmcp6:amd64 (1:1.1.5-1) ...
Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libxcb1:amd64 (1.17.0-2+b1) ...
Setting up libsafe-isa-perl (1.000010-1) ...
Setting up libtie-ixhash-perl (1.23-4) ...
Setting up libtask-weaken-perl (1.06-2) ...
Setting up libicu72:amd64 (72.1-6) ...
Setting up liblerc4:amd64 (4.0.0+ds-5) ...
Setting up bsdextrautils (2.40.4-3) ...
Setting up libparse-yapp-perl (1.21-4) ...
Setting up libclass-inspector-perl (1.36-3) ...
Setting up libdynaloader-functions-perl (0.004-1) ...
Setting up libdatrie1:amd64 (0.2.13-3+b1) ...
Setting up libtext-glob-perl (0.11-3) ...
Setting up libtest-deep-perl (1.204-1) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up libfile-pushd-perl (1.016-2) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
Setting up mafft (7.505-1) ...
Setting up libclone-perl:amd64 (0.47-1+b1) ...
Setting up libalgorithm-diff-perl (1.201-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3+b3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.39-1) ...
Setting up libio-stringy-perl (2.113-2) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up libhtml-tagset-perl (3.24-1) ...
Setting up libtest-file-perl (1.994-1) ...
Setting up libyaml-pp-perl (0.39.0-1) ...
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libbrotli1:amd64 (1.1.0-2+b6) ...
Setting up libheap-perl (0.80-5) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libuv1t64:amd64 (1.50.0-2) ...
Setting up libmagic1t64:amd64 (1:5.45-3+b1) ...
Setting up x11-common (1:7.7+24) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libtry-tiny-perl (0.32-1) ...
Setting up libsensors-config (1:3.6.0-10) ...
Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up libdeflate0:amd64 (1.23-1+b1) ...
Setting up perl-openssl-defaults:amd64 (7+b2) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libclass-singleton-perl (1.6-2) ...
Setting up libpadwalker-perl (2.5-1+b6) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
Setting up libfindbin-libs-perl (3.0.2-1) ...
Setting up libcom-err2:amd64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libxstring-perl:amd64 (0.005-2+b4) ...
Setting up libyaml-tiny-perl (1.76-1) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libjbig0:amd64 (2.1-6.1+b2) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libelf1t64:amd64 (0.192-4) ...
Setting up libtest2-suite-perl (0.000163-1) ...
Setting up libkrb5support0:amd64 (1.21.3-4) ...
Setting up libterm-encoding-perl (0.03-2) ...
Setting up libnumber-compare-perl (0.03-3) ...
Setting up libscope-guard-perl (0.21-2) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up libfile-copy-recursive-perl (0.45-4) ...
Setting up tzdata (2025a-2) ...
Current default time zone: 'Etc/UTC'
Local time is now: Fri Feb 21 15:34:50 UTC 2025.
Universal Time is now: Fri Feb 21 15:34:50 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libjson-maybexs-perl (1.004008-1) ...
Setting up libio-string-perl (1.08-4) ...
Setting up zip (3.0-14) ...
Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libclass-data-inheritable-perl (0.10-1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libset-object-perl (1.42-1+b5) ...
Setting up liblog-log4perl-perl (1.57-1) ...
Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up libtext-diff-perl (1.45-2) ...
Setting up libfile-find-rule-perl (0.34-3) ...
Setting up libio-tiecombine-perl (1.005-3) ...
Setting up libperlio-utf8-strict-perl (0.010-1+b3) ...
Setting up libxml-writer-perl (0.900-2) ...
Setting up libenv-path-perl (0.19-4) ...
Setting up libfribidi0:amd64 (1.0.16-1) ...
Setting up libproc2-0:amd64 (2:4.0.4-7) ...
Setting up libunistring5:amd64 (1.3-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:amd64 (1.6.46-4) ...
Setting up libvariable-magic-perl (0.64-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtext-template-perl (1.61-1) ...
Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Setting up libfile-grep-perl (0.02-3) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up liblist-moreutils-xs-perl (0.430-4+b2) ...
Setting up libsensors5:amd64 (1:3.6.0-10+b1) ...
Setting up libk5crypto3:amd64 (1.21.3-4) ...
Setting up libparams-util-perl (1.102-3+b1) ...
Setting up libspiffy-perl (0.46-1) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up libgfortran5:amd64 (14.2.0-16) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:amd64 (1.6.0-2) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:amd64 (1.5.0-0.1) ...
Setting up libcapture-tiny-perl (0.50-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl:amd64 (0.28-1) ...
Setting up libffi8:amd64 (3.4.7-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up libdata-stag-perl (0.14-3) ...
Setting up libfile-chdir-perl (0.1008-1.2) ...
Setting up sensible-utils (0.0.24) ...
Setting up libtiff6:amd64 (4.5.1+git230720-5) ...
Setting up libpath-tiny-perl (0.146-1) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-7) ...
Setting up libjson-perl (4.10000-1) ...
Setting up libtingea0:amd64 (21-361-2+b2) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up libfile-sharedir-perl (1.118-3) ...
Setting up libsub-uplevel-perl (0.2800-3) ...
Setting up libx11-6:amd64 (2:1.8.10-2) ...
Setting up libaliased-perl (0.34-3) ...
Setting up libthai-data (0.1.29-2) ...
Setting up libcarp-clan-perl (6.08-2) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up fasttree (2.1.11-2) ...
Setting up netbase (6.4) ...
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b5) ...
Setting up libkrb5-3:amd64 (1.21.3-4) ...
Setting up libmodule-path-perl (0.19-3) ...
Setting up libbio-perl-perl (1.7.8-1) ...
Setting up libmbedcrypto16:amd64 (3.6.2-3) ...
Setting up libpaper2:amd64 (2.2.5-0.3+b1) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libexporter-tiny-perl (1.006002-1) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libperl-version-perl (1.018-1) ...
Setting up openssl (3.4.1-1) ...
Setting up libautobox-perl (3.0.2-1+b1) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up bedtools (2.31.1+dfsg-2) ...
Setting up libldap2:amd64 (2.6.9+dfsg-1) ...
Setting up liburi-perl (5.30-1) ...
Setting up prank (0.0.170427+dfsg-3) ...
Setting up libtext-csv-perl (2.05-1) ...
Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up libice6:amd64 (2:1.1.1-1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up liblapack3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up gettext (0.23.1-1) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libhash-merge-simple-perl (0.052-1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ...
Setting up libtool (2.5.4-3) ...
Setting up fontconfig-config (2.15.0-2) ...
Setting up liblist-moreutils-perl (0.430-2) ...
Setting up libtest-warn-perl (0.37-2) ...
Setting up libtype-tiny-perl (2.004000-1) ...
Setting up libtest-differences-perl (0.71-1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b3) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up libidn2-0:amd64 (2.3.7-2+b1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libpaper-utils (2.2.5-0.3+b1) ...
Setting up libio-all-perl (0.87-2) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libgraph-perl (1:0.9733-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Setting up libdata-compare-perl (1.29-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-2+b1) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libglib2.0-0t64:amd64 (2.83.3-2) ...
No schema files found: doing nothing.
Setting up libmbedx509-7:amd64 (3.6.2-3) ...
Setting up libtest-exception-perl (0.43-3) ...
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up mcl (1:22-282+ds-4) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libppi-perl (1.281-1) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libtest-output-perl (1.035-1) ...
Setting up ucf (3.0049) ...
Setting up libsyntax-keyword-junction-perl (0.003009-1) ...
Setting up libmbedtls21:amd64 (3.6.2-3) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
Setting up libxss1:amd64 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:amd64 (2.15.0-2) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:amd64 (2:1.2.4-1) ...
Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ...
Setting up sysstat (12.7.5-2) ...
Creating config file /etc/default/sysstat with new version
update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode
Setting up libio-socket-ssl-perl (2.089-1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up libhttp-message-perl (7.00-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up libstring-truncate-perl (1.100603-1) ...
Setting up libstring-flogger-perl (1.101246-1) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up fontconfig (2.15.0-2) ...
Regenerating fonts cache... done.
Setting up libparams-validationcompiler-perl (0.31-1) ...
Setting up libxft2:amd64 (2.3.6-1+b4) ...
Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up python3.13 (3.13.2-1) ...
Setting up libtest-most-perl (0.38-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libtk8.6:amd64 (8.6.16-1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libpango-1.0-0:amd64 (1.56.1-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libsub-exporter-formethods-perl (0.100055-1) ...
Setting up python3 (3.13.1-2) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libmixin-linewise-perl (0.111-1) ...
Setting up libcairo2:amd64 (1.18.2-2) ...
Setting up libconfig-ini-perl (1:0.029-1) ...
Setting up ncbi-blast+ (2.16.0+ds-6+b1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libstring-formatter-perl (1.235-1) ...
Setting up parallel (20240222+ds-2) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-section-perl (0.200008-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ...
Setting up libsub-exporter-globexporter-perl (0.006-1) ...
Setting up libstring-rewriteprefix-perl (0.009-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ...
Setting up bioperl (1.7.8-1) ...
Setting up libcurl4t64:amd64 (8.12.1-2) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up debhelper (13.24.1) ...
Setting up libpod-eventual-perl (0.094003-1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libtest-files-perl (0.26-1) ...
Setting up libsoftware-license-perl (0.104006-1) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libstring-errf-perl (0.009-1) ...
Setting up libspecio-perl (0.49-1) ...
Setting up r-base-core (4.4.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b4) ...
Setting up libparams-validate-perl:amd64 (1.31-2+b3) ...
Setting up libb-hooks-endofscope-perl (0.28-1) ...
Setting up libthrowable-perl (1.001-2) ...
Setting up libmoose-perl:amd64 (2.2207-1+b3) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libmoosex-setonce-perl (0.200002-2) ...
Setting up libgetopt-long-descriptive-perl (0.116-2) ...
Setting up librole-identifiable-perl (0.009-1) ...
Setting up libnamespace-autoclean-perl (0.31-1) ...
Setting up libdatetime-locale-perl (1:1.41-1) ...
Setting up libmoosex-role-parameterized-perl (1.11-2) ...
Setting up libmoose-autobox-perl (0.16-2) ...
Setting up libapp-cmd-perl (0.337-2) ...
Setting up librole-hasmessage-perl (0.007-1) ...
Setting up libperl-prereqscanner-perl (1.100-1) ...
Setting up libdatetime-timezone-perl (1:2.64-1+2025a) ...
Setting up libmoosex-types-perl (0.50-2) ...
Setting up libmoosex-oneargnew-perl (0.007-1) ...
Setting up libmoosex-lazyrequire-perl (0.11-2) ...
Setting up liblog-dispatch-perl (2.71-1) ...
Setting up libconfig-mvp-perl (2.200013-1) ...
Setting up libdatetime-perl (2:1.65-1+b2) ...
Setting up libpod-elemental-perl (0.103006-1) ...
Setting up libmoosex-types-perl-perl (0.101344-1) ...
Setting up libconfig-mvp-reader-ini-perl (2.101465-1) ...
Setting up liblog-dispatch-array-perl (1.005-1) ...
Setting up libpod-elemental-perlmunger-perl (0.200007-1) ...
Setting up liblog-dispatchouli-perl (3.009-1) ...
Setting up libpod-weaver-perl (4.020-1) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.77-1) ...
Setting up libcpan-uploader-perl (0.103018-1) ...
Setting up libdist-zilla-perl (6.032-1) ...
Setting up libdist-zilla-plugin-podweaver-perl (4.010-1) ...
Setting up libxml-parser-perl (2.47-1+b3) ...
Setting up dh-dist-zilla (1.4.1) ...
Setting up libgraph-readwrite-perl (2.10-1) ...
Processing triggers for libc-bin (2.40-6) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/roary-3.13.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../roary_3.13.0+dfsg-2_source.changes
dpkg-buildpackage: info: source package roary
dpkg-buildpackage: info: source version 3.13.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Ananthu C V <weepingclown@disroot.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --with dist-zilla
dh_dzil_clean
dh_clean
debian/rules binary
dh binary --with dist-zilla
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_dzil_build
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg'
mv bin/create_pan_genome_plots.R bin/create_pan_genome_plots
dh_dzil_build --
[DZ] beginning to build Bio-Roary
[DZ] writing Bio-Roary in .build/debian-build
[DZ] built in .build/debian-build
mv bin/create_pan_genome_plots bin/create_pan_genome_plots.R
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg'
dh_auto_configure -D .build/debian-build
cd .build/debian-build && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/roary-3.13.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/roary-3.13.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro"
Warning: prerequisite Digest::MD5::File 0 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Roary
Writing MYMETA.yml and MYMETA.json
dh_auto_build -D .build/debian-build
cd .build/debian-build && make -j20
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg/.build/debian-build'
cp lib/Bio/Roary/AnalyseGroups.pm blib/lib/Bio/Roary/AnalyseGroups.pm
cp lib/Bio/Roary/AccessoryClustering.pm blib/lib/Bio/Roary/AccessoryClustering.pm
cp lib/Bio/Roary/CommandLine/QueryRoary.pm blib/lib/Bio/Roary/CommandLine/QueryRoary.pm
cp lib/Bio/Roary.pm blib/lib/Bio/Roary.pm
cp lib/Bio/Roary/CommandLine/CreatePanGenome.pm blib/lib/Bio/Roary/CommandLine/CreatePanGenome.pm
cp lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm blib/lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm
cp lib/Bio/Roary/External/Blastp.pm blib/lib/Bio/Roary/External/Blastp.pm
cp lib/Bio/Roary/CommandLine/IterativeCdhit.pm blib/lib/Bio/Roary/CommandLine/IterativeCdhit.pm
cp lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm blib/lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
cp lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm blib/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
cp lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm blib/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
cp lib/Bio/Roary/CommandLine/Common.pm blib/lib/Bio/Roary/CommandLine/Common.pm
cp lib/Bio/Roary/AnnotateGroups.pm blib/lib/Bio/Roary/AnnotateGroups.pm
cp lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm blib/lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
cp lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm blib/lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
cp lib/Bio/Roary/External/CheckTools.pm blib/lib/Bio/Roary/External/CheckTools.pm
cp lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/ClustersRole.pm blib/lib/Bio/Roary/ClustersRole.pm
cp lib/Bio/Roary/CommandLine/Roary.pm blib/lib/Bio/Roary/CommandLine/Roary.pm
cp lib/Bio/Roary/BedFromGFFRole.pm blib/lib/Bio/Roary/BedFromGFFRole.pm
cp lib/Bio/Roary/AssemblyStatistics.pm blib/lib/Bio/Roary/AssemblyStatistics.pm
cp lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm blib/lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
cp lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm blib/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
cp lib/Bio/Roary/ChunkFastaFile.pm blib/lib/Bio/Roary/ChunkFastaFile.pm
cp lib/Bio/Roary/External/Cdhit.pm blib/lib/Bio/Roary/External/Cdhit.pm
cp lib/Bio/Roary/AccessoryBinaryFasta.pm blib/lib/Bio/Roary/AccessoryBinaryFasta.pm
cp lib/Bio/Roary/CombinedProteome.pm blib/lib/Bio/Roary/CombinedProteome.pm
cp lib/Bio/Roary/Exceptions.pm blib/lib/Bio/Roary/Exceptions.pm
cp lib/Bio/Roary/CommandLine/AssemblyStatistics.pm blib/lib/Bio/Roary/CommandLine/AssemblyStatistics.pm
cp lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm blib/lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
cp lib/Bio/Roary/FilterFullClusters.pm blib/lib/Bio/Roary/FilterFullClusters.pm
cp lib/Bio/Roary/External/Mafft.pm blib/lib/Bio/Roary/External/Mafft.pm
cp lib/Bio/Roary/External/Mcl.pm blib/lib/Bio/Roary/External/Mcl.pm
cp lib/Bio/Roary/Output/GroupMultifasta.pm blib/lib/Bio/Roary/Output/GroupMultifasta.pm
cp lib/Bio/Roary/IterativeCdhit.pm blib/lib/Bio/Roary/IterativeCdhit.pm
cp lib/Bio/Roary/GroupStatistics.pm blib/lib/Bio/Roary/GroupStatistics.pm
cp lib/Bio/Roary/External/Fasttree.pm blib/lib/Bio/Roary/External/Fasttree.pm
cp lib/Bio/Roary/LookupGeneFiles.pm blib/lib/Bio/Roary/LookupGeneFiles.pm
cp lib/Bio/Roary/JobRunner/Local.pm blib/lib/Bio/Roary/JobRunner/Local.pm
cp lib/Bio/Roary/FilterUnknownsFromFasta.pm blib/lib/Bio/Roary/FilterUnknownsFromFasta.pm
cp lib/Bio/Roary/GroupLabels.pm blib/lib/Bio/Roary/GroupLabels.pm
cp lib/Bio/Roary/InflateClusters.pm blib/lib/Bio/Roary/InflateClusters.pm
cp lib/Bio/Roary/MergeMultifastaAlignments.pm blib/lib/Bio/Roary/MergeMultifastaAlignments.pm
cp lib/Bio/Roary/OrderGenes.pm blib/lib/Bio/Roary/OrderGenes.pm
cp lib/Bio/Roary/ExtractProteomeFromGFF.pm blib/lib/Bio/Roary/ExtractProteomeFromGFF.pm
cp lib/Bio/Roary/Output/DifferenceBetweenSets.pm blib/lib/Bio/Roary/Output/DifferenceBetweenSets.pm
cp lib/Bio/Roary/External/IterativeCdhit.pm blib/lib/Bio/Roary/External/IterativeCdhit.pm
cp lib/Bio/Roary/Output/EmblGroups.pm blib/lib/Bio/Roary/Output/EmblGroups.pm
cp lib/Bio/Roary/JobRunner/Parallel.pm blib/lib/Bio/Roary/JobRunner/Parallel.pm
cp lib/Bio/Roary/ExtractProteomeFromGFFs.pm blib/lib/Bio/Roary/ExtractProteomeFromGFFs.pm
cp lib/Bio/Roary/JobRunner/Role.pm blib/lib/Bio/Roary/JobRunner/Role.pm
cp lib/Bio/Roary/External/Makeblastdb.pm blib/lib/Bio/Roary/External/Makeblastdb.pm
cp lib/Bio/Roary/Output/BlastIdentityFrequency.pm blib/lib/Bio/Roary/Output/BlastIdentityFrequency.pm
cp lib/Bio/Roary/Output/EMBLHeaderCommon.pm blib/lib/Bio/Roary/Output/EMBLHeaderCommon.pm
cp lib/Bio/Roary/External/PostAnalysis.pm blib/lib/Bio/Roary/External/PostAnalysis.pm
cp lib/Bio/Roary/External/Prank.pm blib/lib/Bio/Roary/External/Prank.pm
cp lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/GeneNamesFromGFF.pm blib/lib/Bio/Roary/GeneNamesFromGFF.pm
cp lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm blib/lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
cp lib/Bio/Roary/ReformatInputGFFs.pm blib/lib/Bio/Roary/ReformatInputGFFs.pm
cp lib/Bio/Roary/SampleOrder.pm blib/lib/Bio/Roary/SampleOrder.pm
cp lib/Bio/Roary/PostAnalysis.pm blib/lib/Bio/Roary/PostAnalysis.pm
cp lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
cp lib/Bio/Roary/ParallelAllAgainstAllBlast.pm blib/lib/Bio/Roary/ParallelAllAgainstAllBlast.pm
cp lib/Bio/Roary/PresenceAbsenceMatrix.pm blib/lib/Bio/Roary/PresenceAbsenceMatrix.pm
cp lib/Bio/Roary/Output/NumberOfGroups.pm blib/lib/Bio/Roary/Output/NumberOfGroups.pm
cp lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
cp lib/Bio/Roary/Output/QueryGroups.pm blib/lib/Bio/Roary/Output/QueryGroups.pm
cp lib/Bio/Roary/SplitGroups.pm blib/lib/Bio/Roary/SplitGroups.pm
cp lib/Bio/Roary/SortFasta.pm blib/lib/Bio/Roary/SortFasta.pm
cp lib/Bio/Roary/Output/GroupsMultifastaProtein.pm blib/lib/Bio/Roary/Output/GroupsMultifastaProtein.pm
cp lib/Bio/Roary/PrepareInputFiles.pm blib/lib/Bio/Roary/PrepareInputFiles.pm
cp lib/Bio/Roary/QC/Report.pm blib/lib/Bio/Roary/QC/Report.pm
cp lib/Bio/Roary/SpreadsheetRole.pm blib/lib/Bio/Roary/SpreadsheetRole.pm
cp lib/Bio/Roary/Output/GroupsMultifastas.pm blib/lib/Bio/Roary/Output/GroupsMultifastas.pm
cp lib/Bio/Roary/UniqueGenesPerSample.pm blib/lib/Bio/Roary/UniqueGenesPerSample.pm
cp lib/Bio/Roary/ParseGFFAnnotationRole.pm blib/lib/Bio/Roary/ParseGFFAnnotationRole.pm
cp lib/Bio/Roary/SequenceLengths.pm blib/lib/Bio/Roary/SequenceLengths.pm
cp lib/Bio/Roary/ReorderSpreadsheet.pm blib/lib/Bio/Roary/ReorderSpreadsheet.pm
cp bin/create_pan_genome blib/script/create_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome
cp bin/create_pan_genome_plots blib/script/create_pan_genome_plots
cp bin/extract_proteome_from_gff blib/script/extract_proteome_from_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome_plots
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/extract_proteome_from_gff
cp bin/iterative_cdhit blib/script/iterative_cdhit
cp bin/pan_genome_assembly_statistics blib/script/pan_genome_assembly_statistics
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/iterative_cdhit
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_assembly_statistics
cp bin/pan_genome_core_alignment blib/script/pan_genome_core_alignment
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_core_alignment
cp bin/pan_genome_post_analysis blib/script/pan_genome_post_analysis
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_post_analysis
cp bin/pan_genome_reorder_spreadsheet blib/script/pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_reorder_spreadsheet
cp bin/parallel_all_against_all_blastp blib/script/parallel_all_against_all_blastp
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/parallel_all_against_all_blastp
cp bin/protein_alignment_from_nucleotides blib/script/protein_alignment_from_nucleotides
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/protein_alignment_from_nucleotides
cp bin/query_pan_genome blib/script/query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/query_pan_genome
cp bin/roary blib/script/roary
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary
cp bin/roary-create_pan_genome_plots.R blib/script/roary-create_pan_genome_plots.R
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-create_pan_genome_plots.R
cp bin/roary-pan_genome_reorder_spreadsheet blib/script/roary-pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-pan_genome_reorder_spreadsheet
cp bin/roary-query_pan_genome blib/script/roary-query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-query_pan_genome
cp bin/roary-unique_genes_per_sample blib/script/roary-unique_genes_per_sample
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-unique_genes_per_sample
cp bin/transfer_annotation_to_groups blib/script/transfer_annotation_to_groups
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/transfer_annotation_to_groups
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg/.build/debian-build'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg'
# Hmmm, seems the test is not automatically run anyway by the build system
dh_auto_test || true
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install -D .build/debian-build --destdir=debian/roary/
cd .build/debian-build && make -j20 install DESTDIR=/build/reproducible-path/roary-3.13.0\+dfsg/debian/roary AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg/.build/debian-build'
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SampleOrder.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SplitGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SortFasta.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CombinedProteome.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/IterativeCdhit.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PostAnalysis.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/InflateClusters.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Exceptions.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupLabels.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterFullClusters.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupStatistics.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnnotateGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnalyseGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/OrderGenes.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryClustering.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ClustersRole.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/UniqueGenesPerSample.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SequenceLengths.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Common.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/QC/Report.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Blastp.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Fasttree.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mafft.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/CheckTools.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Prank.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Cdhit.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Makeblastdb.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mcl.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Local.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Role.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaProtein.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/DifferenceBetweenSets.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/QueryGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupMultifasta.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastas.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EmblGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/protein_alignment_from_nucleotides.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_core_alignment.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/create_pan_genome_plots.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/query_pan_genome.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/iterative_cdhit.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/parallel_all_against_all_blastp.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/extract_proteome_from_gff.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/transfer_annotation_to_groups.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-unique_genes_per_sample.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_post_analysis.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/create_pan_genome.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-query_pan_genome.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_assembly_statistics.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SequenceLengths.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::UniqueGenesPerSample.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::InflateClusters.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Exceptions.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mafft.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupStatistics.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupLabels.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Prank.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SplitGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mcl.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::CheckTools.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ClustersRole.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::UniqueGenesPerSample.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SampleOrder.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SortFasta.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::OrderGenes.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::QC::Report.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Blastp.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/transfer_annotation_to_groups
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/query_pan_genome
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_reorder_spreadsheet
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-pan_genome_reorder_spreadsheet
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-create_pan_genome_plots.R
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-query_pan_genome
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/protein_alignment_from_nucleotides
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-unique_genes_per_sample
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_core_alignment
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_assembly_statistics
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/extract_proteome_from_gff
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/create_pan_genome
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/parallel_all_against_all_blastp
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/iterative_cdhit
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/create_pan_genome_plots
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_post_analysis
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg/.build/debian-build'
debian/rules execute_after_dh_install
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg'
# debian policy 10.4
mv debian/roary/usr/bin/roary-create_pan_genome_plots.R debian/roary/usr/bin/roary-create_pan_genome_plots
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'roary' in '../roary_3.13.0+dfsg-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../roary_3.13.0+dfsg-2_amd64.buildinfo
dpkg-genchanges --build=binary -O../roary_3.13.0+dfsg-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3193604 and its subdirectories
I: Current time: Fri Feb 21 03:38:42 -12 2025
I: pbuilder-time-stamp: 1740152322
Fri Feb 21 15:38:43 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Fri Feb 21 15:38:43 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Fri Feb 21 15:40:32 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Fri Feb 21 15:40:32 UTC 2025 I: roary_3.13.0+dfsg-2_amd64.changes:
Format: 1.8
Date: Mon, 02 Dec 2024 23:00:41 +0530
Source: roary
Binary: roary
Architecture: all
Version: 3.13.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Ananthu C V <weepingclown@disroot.org>
Description:
roary - high speed stand alone pan genome pipeline
Closes: 1047005 1049576
Changes:
roary (3.13.0+dfsg-2) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* Use common naming scheme for autopkgtest scripts
* Provide autopkgtest as user example
* Standards-Version: 4.6.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Use secure URI in Homepage field.
* Drop unneeded lintian-overrides
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Add debug for "Cannot find the mcxdeblast executable, please ensure
its in your PATH"
* Fix autopkgtest
* The missing mcxdeblast issue is gone
.
[ Ananthu C V ]
* Move file to original place after build (Closes: #1047005, #1049576)
* Remove language suffix from installed scripts
* Bump standards version to 4.7.0 (no changes needed)
Checksums-Sha1:
40e590cf7179e54c0b82ea613f59d36e33188b5f 185016 roary_3.13.0+dfsg-2_all.deb
71d096eb607736c2643f0aefa967dd4345f675f7 14500 roary_3.13.0+dfsg-2_amd64.buildinfo
Checksums-Sha256:
48fecc1e1f31e83140f775fb97e5c27e2de68cf48e05ee3341fa5cdc86397498 185016 roary_3.13.0+dfsg-2_all.deb
81e818a671c821d13fc2ef0cf04511a072348c48a1c7ac884fa4769150296719 14500 roary_3.13.0+dfsg-2_amd64.buildinfo
Files:
247652fdecd41717bda218c403fa60b1 185016 science optional roary_3.13.0+dfsg-2_all.deb
0213d0d4d16dab07a214e094db6535ad 14500 science optional roary_3.13.0+dfsg-2_amd64.buildinfo
Fri Feb 21 15:40:33 UTC 2025 I: diffoscope 288 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_5-31707.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QdQFUasI/roary_3.13.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QdQFUasI/roary_3.13.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QdQFUasI/roary_3.13.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QdQFUasI/b1/roary_3.13.0+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QdQFUasI/b2/roary_3.13.0+dfsg-2_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.004s)
0.004s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 314ms
CPU time consumed: 315ms
Fri Feb 21 15:40:34 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists.
Fri Feb 21 15:40:34 UTC 2025 I: roary from trixie built successfully and reproducibly on amd64.
Fri Feb 21 15:40:36 UTC 2025 I: Submitting .buildinfo files to external archives:
Fri Feb 21 15:40:36 UTC 2025 I: Submitting 16K b1/roary_3.13.0+dfsg-2_amd64.buildinfo.asc
Fri Feb 21 15:40:37 UTC 2025 I: Submitting 16K b2/roary_3.13.0+dfsg-2_amd64.buildinfo.asc
Fri Feb 21 15:40:37 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Feb 21 15:40:37 UTC 2025 I: Done submitting .buildinfo files.
Fri Feb 21 15:40:37 UTC 2025 I: Removing signed roary_3.13.0+dfsg-2_amd64.buildinfo.asc files:
removed './b1/roary_3.13.0+dfsg-2_amd64.buildinfo.asc'
removed './b2/roary_3.13.0+dfsg-2_amd64.buildinfo.asc'