Wed Feb 26 17:36:11 UTC 2025 I: starting to build theseus/trixie/amd64 on jenkins on '2025-02-26 17:35' Wed Feb 26 17:36:11 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_35/48600/console.log Wed Feb 26 17:36:11 UTC 2025 I: Downloading source for trixie/theseus=3.3.0-14 --2025-02-26 17:36:11-- http://deb.debian.org/debian/pool/main/t/theseus/theseus_3.3.0-14.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2085 (2.0K) [text/prs.lines.tag] Saving to: ‘theseus_3.3.0-14.dsc’ 0K .. 100% 345M=0s 2025-02-26 17:36:11 (345 MB/s) - ‘theseus_3.3.0-14.dsc’ saved [2085/2085] Wed Feb 26 17:36:11 UTC 2025 I: theseus_3.3.0-14.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: theseus Binary: theseus, theseus-examples Architecture: amd64 i386 all Version: 3.3.0-14 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Pierre Gruet Homepage: http://www.theseus3d.org Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/theseus Vcs-Git: https://salsa.debian.org/med-team/theseus.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), libgsl-dev Package-List: theseus deb science optional arch=amd64,i386 theseus-examples deb science optional arch=all Checksums-Sha1: b078079cfa0022b6755a4252b20a80312d4f8964 22548124 theseus_3.3.0.orig.tar.gz e01725bb93c68c5ab5d15d0b4c47dc57c2fa7009 16548 theseus_3.3.0-14.debian.tar.xz Checksums-Sha256: 3cfd4f906717f9cb8e77f689fc97059b32df355c0696077034ea99a485e3f2fe 22548124 theseus_3.3.0.orig.tar.gz 9933c3b28db456144e0d18b1d57f61f0b8024ba9d98e147866f4ea893311c2c2 16548 theseus_3.3.0-14.debian.tar.xz Files: 394c8676760cc3a8adc42d9623d94dfc 22548124 theseus_3.3.0.orig.tar.gz 4a41839e92ed70ec952fe1e22e5415fb 16548 theseus_3.3.0-14.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmN3wLoACgkQYAMWptwn dHbp2w//XvJ36zO+vZIV9HleGhTMYCLnsDWeKLqvPyo54bM8aaqjCFr445o5pe1f EHF20SUgCMoOJZ++0SOWH1C0rEAWEGMr2JKsPEDKEemh13LiXioqzefvji4Y9RJ9 mqXkGCJikMhj09VIlKkHmc+mrWjUagaSAXvaqy0UdOWgQYs235g4fyuX4MsnVELO qza3ybF23/n1gMgh++7PtkIa823NHipI6DPCXiNJiKtluvi5lgO6hnbZKGTGNSUj EWBrjeni/GW8Aofhw7PEzniEir1TX8nxn03J4+Voshbx9fTL7mPxXBVoWtiFwLfO OdtV3rILQLV3IcwzhNHW92lkCvX8k+NLiL/63pSXCmJHXEcAo7ocdNMBEqe8d4hY 1skO0zcYMoXdWePJ6CVnWar4VTdiAZlAo4pmiGR84xfFn2L/omxmg++xsyy3yOBU JAl1QthCGC78xw2DZyxUe7m8pX5kel3eN19xkym6NrZbyGjBluZLrYnQpjrbKFk7 ZXcnqne1F3NICCcQA6HE2JyPeW4shdX4K1ATfYjzJNPWAsELd2/DCHi1JF5R8e8+ hQPr8k6OEY65q0VXOERLc2DSOADSCVVpvvtkU07GQBZ5UtWhJFVfaOXgldgVnTuR 6PuMl3K//uFT98gkN2tDtfuyLkXdm0rOX4zNwjGKdhndLuqFlgo= =Zn5O -----END PGP SIGNATURE----- Wed Feb 26 17:36:11 UTC 2025 I: Checking whether the package is not for us Wed Feb 26 17:36:11 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Wed Feb 26 17:36:11 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Wed Feb 26 17:37:58 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Feb 26 05:36:13 -12 2025 I: pbuilder-time-stamp: 1740591373 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [theseus_3.3.0-14.dsc] I: copying [./theseus_3.3.0.orig.tar.gz] I: copying [./theseus_3.3.0-14.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./theseus_3.3.0-14.dsc: unsupported subcommand dpkg-source: info: extracting theseus in theseus-3.3.0 dpkg-source: info: unpacking theseus_3.3.0.orig.tar.gz dpkg-source: info: unpacking theseus_3.3.0-14.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 30_fix_gcc_options.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying 0003-fix-issues-uncovered-by-gcc8.patch dpkg-source: info: applying 0004-create-lib-dir.patch dpkg-source: info: applying 0005_stringbuffer.patch dpkg-source: info: applying adapt_to_muscle5.patch dpkg-source: info: applying remove_linefix.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/389181/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8239249b97db4059bf489d04b69c8a10' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='389181' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qpbo77R0/pbuilderrc_84j7 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qpbo77R0/b1 --logfile b1/build.log theseus_3.3.0-14.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/389181/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19799 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 22.9 MB of archives. After unpacking 89.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB] Fetched 22.9 MB in 0s (113 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19799 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-4_amd64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package libgslcblas0:amd64. Preparing to unpack .../30-libgslcblas0_2.8+dfsg-5_amd64.deb ... Unpacking libgslcblas0:amd64 (2.8+dfsg-5) ... Selecting previously unselected package libgsl28:amd64. Preparing to unpack .../31-libgsl28_2.8+dfsg-5_amd64.deb ... Unpacking libgsl28:amd64 (2.8+dfsg-5) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../32-libgsl-dev_2.8+dfsg-5_amd64.deb ... Unpacking libgsl-dev (2.8+dfsg-5) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libgslcblas0:amd64 (2.8+dfsg-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libgsl28:amd64 (2.8+dfsg-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/theseus-3.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../theseus_3.3.0-14_source.changes dpkg-buildpackage: info: source package theseus dpkg-buildpackage: info: source version 3.3.0-14 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/theseus-3.3.0' find . -name '*.[oa]' -exec rm -f {} \; rm -f theseus distfit make[1]: Leaving directory '/build/reproducible-path/theseus-3.3.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/theseus-3.3.0' dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/theseus-3.3.0' mkdir -p lib ( cd libdistfit; make && cp libdistfit.a ../lib ) make[3]: Entering directory '/build/reproducible-path/theseus-3.3.0/libdistfit' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c statistics.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c beta_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c betaprime_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c betasym_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c binomial_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c cauchy_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chi_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chisqr_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chisqrgen_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c EVD_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c exp_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c gamma_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invchisqr_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invgamma_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invgauss_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c laplace_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c logistic_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c lognormal_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c maxwell_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c negbinom_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c normal_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pareto_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c rayleigh_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c recinvgauss_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c rice_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c uniform_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c vonmises_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c weibull_dist.c ar -rvs libdistfit.a statistics.o beta_dist.o betaprime_dist.o betasym_dist.o binomial_dist.o cauchy_dist.o chi_dist.o chisqr_dist.o chisqrgen_dist.o EVD_dist.o exp_dist.o gamma_dist.o invchisqr_dist.o invgamma_dist.o invgauss_dist.o laplace_dist.o logistic_dist.o lognormal_dist.o maxwell_dist.o negbinom_dist.o normal_dist.o pareto_dist.o rayleigh_dist.o recinvgauss_dist.o rice_dist.o uniform_dist.o vonmises_dist.o weibull_dist.o ar: creating libdistfit.a a - statistics.o a - beta_dist.o a - betaprime_dist.o a - betasym_dist.o a - binomial_dist.o a - cauchy_dist.o a - chi_dist.o a - chisqr_dist.o a - chisqrgen_dist.o a - EVD_dist.o a - exp_dist.o a - gamma_dist.o a - invchisqr_dist.o a - invgamma_dist.o a - invgauss_dist.o a - laplace_dist.o a - logistic_dist.o a - lognormal_dist.o a - maxwell_dist.o a - negbinom_dist.o a - normal_dist.o a - pareto_dist.o a - rayleigh_dist.o a - recinvgauss_dist.o a - rice_dist.o a - uniform_dist.o a - vonmises_dist.o a - weibull_dist.o ranlib libdistfit.a make[3]: Leaving directory '/build/reproducible-path/theseus-3.3.0/libdistfit' ( cd libDLTutils; make && cp libDLTutils.a ../lib ) make[3]: Entering directory '/build/reproducible-path/theseus-3.3.0/libDLTutils' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c DLTutils.c ar -rvs libDLTutils.a DLTutils.o ar: creating libDLTutils.a a - DLTutils.o ranlib libDLTutils.a make[3]: Leaving directory '/build/reproducible-path/theseus-3.3.0/libDLTutils' ( cd libmsa; make && cp libmsa.a ../lib ) make[3]: Entering directory '/build/reproducible-path/theseus-3.3.0/libmsa' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c msa.c ar -rvs libmsa.a msa.o ar: creating libmsa.a a - msa.o ranlib libmsa.a make[3]: Leaving directory '/build/reproducible-path/theseus-3.3.0/libmsa' ( cd libdltmath; make && cp libdltmath.a ../lib ) make[3]: Entering directory '/build/reproducible-path/theseus-3.3.0/libdltmath' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ludcmp.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MatUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Mat3Utils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Mat4Utils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c VecUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c quicksort.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c integrate.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c eigen_gsl.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultivarGamma.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c specfunc.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c RegGamma.c ar -rvs libdltmath.a ludcmp.o MatUtils.o Mat3Utils.o Mat4Utils.o VecUtils.o quicksort.o integrate.o eigen_gsl.o MultivarGamma.o specfunc.o RegGamma.o ar: creating libdltmath.a a - ludcmp.o a - MatUtils.o a - Mat3Utils.o a - Mat4Utils.o a - VecUtils.o a - quicksort.o a - integrate.o a - eigen_gsl.o a - MultivarGamma.o a - specfunc.o a - RegGamma.o ranlib libdltmath.a make[3]: Leaving directory '/build/reproducible-path/theseus-3.3.0/libdltmath' ( cd libdssplite; make && cp libdssplite.a ../lib ) make[3]: Entering directory '/build/reproducible-path/theseus-3.3.0/libdssplite' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c dssplite.c ar -rvs libdssplite.a dssplite.o ar: creating libdssplite.a a - dssplite.o ranlib libdssplite.a make[3]: Leaving directory '/build/reproducible-path/theseus-3.3.0/libdssplite' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c CovMat.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c DistMat.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Embed.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Error.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c FragCds.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c FragDist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c HierarchVars.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c lodmats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPose.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPose2MSA.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPosePth.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c PCAstats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbIO.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbMalloc.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbStats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c QuarticHornFrag.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c RandCds.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbSSM.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcGSLSVD.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcGSLSVDNu.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcJacobiSVD.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c GibbsMet.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c qcprot.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c StructAlign.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c NWfill.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c termcol.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c theseuslib.c ar -rvs libtheseus.a CovMat.o DistMat.o Embed.o Error.o FragCds.o FragDist.o HierarchVars.o lodmats.o MultiPose.o MultiPose2MSA.o MultiPosePth.o PCAstats.o pdbIO.o pdbMalloc.o pdbStats.o pdbUtils.o QuarticHornFrag.o RandCds.o pdbSSM.o ProcGSLSVD.o ProcGSLSVDNu.o ProcJacobiSVD.o GibbsMet.o qcprot.o StructAlign.o NWfill.o termcol.o theseuslib.o ar: creating libtheseus.a a - CovMat.o a - DistMat.o a - Embed.o a - Error.o a - FragCds.o a - FragDist.o a - HierarchVars.o a - lodmats.o a - MultiPose.o a - MultiPose2MSA.o a - MultiPosePth.o a - PCAstats.o a - pdbIO.o a - pdbMalloc.o a - pdbStats.o a - pdbUtils.o a - QuarticHornFrag.o a - RandCds.o a - pdbSSM.o a - ProcGSLSVD.o a - ProcGSLSVDNu.o a - ProcJacobiSVD.o a - GibbsMet.o a - qcprot.o a - StructAlign.o a - NWfill.o a - termcol.o a - theseuslib.o mv libtheseus.a lib/libtheseus.a ranlib lib/libtheseus.a /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c theseus.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -Wl,-z,relro -Wl,-z,now -L./lib theseus.o CovMat.o DistMat.o Embed.o Error.o FragCds.o FragDist.o HierarchVars.o lodmats.o MultiPose.o MultiPose2MSA.o MultiPosePth.o PCAstats.o pdbIO.o pdbMalloc.o pdbStats.o pdbUtils.o QuarticHornFrag.o RandCds.o pdbSSM.o ProcGSLSVD.o ProcGSLSVDNu.o ProcJacobiSVD.o GibbsMet.o qcprot.o StructAlign.o NWfill.o termcol.o theseuslib.o -lgsl -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus -lpthread -lgsl -lgslcblas -lm -lc -o theseus make[2]: Leaving directory '/build/reproducible-path/theseus-3.3.0' make[1]: Leaving directory '/build/reproducible-path/theseus-3.3.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/theseus-3.3.0' make install INSTALLDIR=/build/reproducible-path/theseus-3.3.0/debian/theseus/usr/bin make[2]: Entering directory '/build/reproducible-path/theseus-3.3.0' chmod +x theseus theseus_align cp theseus theseus_align /build/reproducible-path/theseus-3.3.0/debian/theseus/usr/bin make[2]: Leaving directory '/build/reproducible-path/theseus-3.3.0' # Fix wrong path used in upstream script. Fixing it here is safer than # changing the patch for any new upstream release sed -e 's?/usr/local/bin?/usr/bin?' \ -e 's?/usr/bin/sed?/bin/sed?' \ theseus_align > debian/theseus/usr/bin/theseus_align make[1]: Leaving directory '/build/reproducible-path/theseus-3.3.0' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/theseus-3.3.0' # nothing to do here make[1]: Leaving directory '/build/reproducible-path/theseus-3.3.0' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/theseus-3.3.0' dh_install # remove macos resource files find debian -name "._*" -delete find debian -name ".DS_*" -delete make[1]: Leaving directory '/build/reproducible-path/theseus-3.3.0' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'theseus-examples' in '../theseus-examples_3.3.0-14_all.deb'. dpkg-deb: building package 'theseus-dbgsym' in '../theseus-dbgsym_3.3.0-14_amd64.deb'. dpkg-deb: building package 'theseus' in '../theseus_3.3.0-14_amd64.deb'. dpkg-genbuildinfo --build=binary -O../theseus_3.3.0-14_amd64.buildinfo dpkg-genchanges --build=binary -O../theseus_3.3.0-14_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/389181 and its subdirectories I: Current time: Wed Feb 26 05:37:57 -12 2025 I: pbuilder-time-stamp: 1740591477 Wed Feb 26 17:37:58 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Wed Feb 26 17:37:58 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Wed Feb 26 17:40:48 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Wed Feb 26 17:40:49 UTC 2025 I: theseus_3.3.0-14_amd64.changes: Format: 1.8 Date: Fri, 18 Nov 2022 18:15:57 +0100 Source: theseus Binary: theseus theseus-dbgsym theseus-examples Architecture: amd64 all Version: 3.3.0-14 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: theseus - superimpose macromolecules using maximum likelihood theseus-examples - superimpose macromolecules using maximum likelihood (examples) Changes: theseus (3.3.0-14) unstable; urgency=medium . * Building theseus only on amd64 and i386, see Bug #1017563 * Adding myself as uploader Checksums-Sha1: f78bd51992163e55bbd5476b6b06d6472e54ab29 14920 theseus-dbgsym_3.3.0-14_amd64.deb a8712359acc50cd7f60ddf5b70b75d581ed77a46 20814372 theseus-examples_3.3.0-14_all.deb ff4cf11e7be125ca4dd825c1c72de39990d72092 5247 theseus_3.3.0-14_amd64.buildinfo a26359082059e321f824168762f366130305e5b3 385932 theseus_3.3.0-14_amd64.deb Checksums-Sha256: 4f264016ce356ddf802076768df32a89e12a19c5dc98f3c5e49f2b2ad1a15bc8 14920 theseus-dbgsym_3.3.0-14_amd64.deb 28edee17ca89b2d75d34c022cb8dd8ed60d4b0597a2f26f3c655f497eb776978 20814372 theseus-examples_3.3.0-14_all.deb cd53f74580675c33d182976025565a51e18b0f0f482f0ba7326fbf905a39ae0a 5247 theseus_3.3.0-14_amd64.buildinfo 85c6a7b819c9d45f6d7b8c34182cb82c76199700f14bddd81540ab8aed855101 385932 theseus_3.3.0-14_amd64.deb Files: cf09b656f37dc7bb842e5be05e7b3247 14920 debug optional theseus-dbgsym_3.3.0-14_amd64.deb 9e4be7bc3be47452e9e344aabf66bf1b 20814372 science optional theseus-examples_3.3.0-14_all.deb 56e5c3ef1b9fe47f8416fdd5a09df8df 5247 science optional theseus_3.3.0-14_amd64.buildinfo 0c6a278ee3e27e972f3c72575383b231 385932 science optional theseus_3.3.0-14_amd64.deb Wed Feb 26 17:40:50 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_35-48600.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Qpbo77R0/theseus_3.3.0-14.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Qpbo77R0/theseus_3.3.0-14.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Qpbo77R0/theseus_3.3.0-14.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Qpbo77R0/b1/theseus_3.3.0-14_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Qpbo77R0/b2/theseus_3.3.0-14_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 225ms CPU time consumed: 226ms Wed Feb 26 17:40:50 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Wed Feb 26 17:40:50 UTC 2025 I: theseus from trixie built successfully and reproducibly on amd64. Wed Feb 26 17:40:52 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Feb 26 17:40:52 UTC 2025 I: Submitting 8.0K b1/theseus_3.3.0-14_amd64.buildinfo.asc Wed Feb 26 17:40:53 UTC 2025 I: Submitting 8.0K b2/theseus_3.3.0-14_amd64.buildinfo.asc Wed Feb 26 17:40:54 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Feb 26 17:40:54 UTC 2025 I: Done submitting .buildinfo files. Wed Feb 26 17:40:55 UTC 2025 I: Removing signed theseus_3.3.0-14_amd64.buildinfo.asc files: removed './b1/theseus_3.3.0-14_amd64.buildinfo.asc' removed './b2/theseus_3.3.0-14_amd64.buildinfo.asc'