Wed Feb 26 04:45:54 UTC 2025 I: starting to build bifrost/trixie/arm64 on jenkins on '2025-02-26 04:45' Wed Feb 26 04:45:54 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/79074/console.log Wed Feb 26 04:45:54 UTC 2025 I: Downloading source for trixie/bifrost=1.3.1-1 --2025-02-26 04:45:54-- http://deb.debian.org/debian/pool/main/b/bifrost/bifrost_1.3.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2099 (2.0K) [text/prs.lines.tag] Saving to: ‘bifrost_1.3.1-1.dsc’ 0K .. 100% 344M=0s 2025-02-26 04:45:54 (344 MB/s) - ‘bifrost_1.3.1-1.dsc’ saved [2099/2099] Wed Feb 26 04:45:54 UTC 2025 I: bifrost_1.3.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bifrost Binary: bifrost, libbifrost0, libbifrost-dev Architecture: any Version: 1.3.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/pmelsted/bifrost Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/bifrost Vcs-Git: https://salsa.debian.org/med-team/bifrost.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev Package-List: bifrost deb python optional arch=any libbifrost-dev deb libdevel optional arch=any libbifrost0 deb libs optional arch=any Checksums-Sha1: 9daeeab211c6f2bd19b8ac6ad12dac770e8f100f 349856 bifrost_1.3.1.orig.tar.gz bf0657121971cc5635e117f45f620bff5202026e 253052 bifrost_1.3.1-1.debian.tar.xz Checksums-Sha256: d6a9baacddba8e9508336c5adff15a8a482774c724fc0710392fed7bb9ad1e8b 349856 bifrost_1.3.1.orig.tar.gz 6b7fa56dd267ab84746d3169cf7a53471c6954176250fe88a7b074cc5fdb9676 253052 bifrost_1.3.1-1.debian.tar.xz Files: 71940660817cb6a0af24663bf00cc5db 349856 bifrost_1.3.1.orig.tar.gz efb8eacd113e4b5f264cea30b0fac580 253052 bifrost_1.3.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWXu9kRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHTbA/9GvD2gJsMd07oSzjZDNKKJro4Ah4HmBgv RvwYiR3GsIMQz8zgDkaW7CSOALqkaoypeGaNxVHIo7h4lrQYD7SNPMY92J0lToaW etQnjYW3a9Hiz+YejPMngKmNoQx+SLFHQ3wcFcU71sd/B1VfT5TvxB2rwpyKXB15 X6AKrzE1wkIrpmfW969602vNWoxDLp2D45hdpOKV2NuwVy717cuUFwAQpqyMDd08 drfpI8HBleUOdeC0XozdsRgXSf41i+6wlqseRWGPtWSXJDxB7A8ssNOPDnzxRvFs OOzIldoRhULsNgx+KSRSCeVUyhIYyVdgqWCgrjwiMT3TIxDAthdDwamadRfiSU97 n5Eol+doT0kOT2xM0lBCGylGLwhN5CDSXpab1435PINUiP8iTL34tqvAgyzZFLvp 4rIYwRiJrWzhOUFTurKqTOG6w5Du+4PgTT90FvOioAkuNBftQ0iaCCxmI9UPHPRx RiZKWfn6ClYMshvUZ3SV08u3MyOiQgNW76g8l0Mb7YeozAb899Vq2in2ih0KIDNe rQo+lnWvVWLXCRjXsQlIB83ZlbTnc+vvv2odNc6XdIC1xhAF3SkVN0lLeISgFXDK mgY32kM/oKk0KXkjIFwt99M1G+qWyktiFToE+9IdlgL/iShMznwajQOZwYjHrCfA SRlnI8+EJGc= =Lib9 -----END PGP SIGNATURE----- Wed Feb 26 04:45:54 UTC 2025 I: Checking whether the package is not for us Wed Feb 26 04:45:54 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Wed Feb 26 04:45:54 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Wed Feb 26 04:49:31 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 30 23:08:56 -12 2026 I: pbuilder-time-stamp: 1774955336 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bifrost_1.3.1-1.dsc] I: copying [./bifrost_1.3.1.orig.tar.gz] I: copying [./bifrost_1.3.1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./bifrost_1.3.1-1.dsc: unsupported subcommand dpkg-source: info: extracting bifrost in bifrost-1.3.1 dpkg-source: info: unpacking bifrost_1.3.1.orig.tar.gz dpkg-source: info: unpacking bifrost_1.3.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_soname.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3386171/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='69efc6cb840f4a58926258ea5c9fafdf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3386171' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.v4O7YBv1/pbuilderrc_ecHT --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.v4O7YBv1/b1 --logfile b1/build.log bifrost_1.3.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3386171/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19914 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 38.8 MB of archives. After unpacking 148 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 d-shlibs all 0.109 [11.1 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 56 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 38.8 MB in 0s (103 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19914 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-4_arm64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.5-2_all.deb ... Unpacking cmake-data (3.31.5-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../18-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../23-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bifrost-1.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bifrost_1.3.1-1_source.changes dpkg-buildpackage: info: source package bifrost dpkg-buildpackage: info: source version 1.3.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.1' dh_auto_configure -- -DCOMPILATION_ARCH=OFF cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCOMPILATION_ARCH=OFF .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE Disabling native architecture compilation (including AVX2) Build type: Release Maximum k-mer size: 31 Maximum g-mer size: 31 -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Configuring done (2.2s) -- 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'/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' [ 3%] Building CXX object src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o [ 6%] Building CXX object src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Bifrost.cpp [ 9%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o [ 12%] Building CXX object src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o cd 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-D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_static.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BitContainer.cpp [ 15%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BitContainer.cpp [ 18%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o [ 21%] Building CXX object src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BlockedBloomFilter.cpp [ 25%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BlockedBloomFilter.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/ColorSet.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/ColorSet.cpp [ 28%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedCoverage.cpp [ 31%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedSequence.cpp [ 37%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedCoverage.cpp [ 37%] Building CXX object src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/FASTX_Parser.cpp [ 40%] Building CXX object src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp [ 43%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedSequence.cpp [ 46%] Building CXX object src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_static.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_static.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Kmer.cpp [ 50%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/FASTX_Parser.cpp [ 53%] Building CXX object src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/KmerIterator.cpp [ 56%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp [ 59%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Kmer.cpp [ 62%] Building CXX object src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/MinimizerIndex.cpp [ 65%] Building CXX object src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/TinyBitmap.cpp [ 68%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/KmerIterator.cpp [ 71%] Building CXX object src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/UnitigMap.cpp [ 75%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/MinimizerIndex.cpp [ 78%] Building C object src/CMakeFiles/bifrost_static.dir/roaring.c.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/roaring.c.o -MF CMakeFiles/bifrost_static.dir/roaring.c.o.d -o CMakeFiles/bifrost_static.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.1/src/roaring.c [ 81%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/TinyBitmap.cpp [ 84%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/UnitigMap.cpp [ 87%] Building C object src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -MF CMakeFiles/bifrost_dynamic.dir/roaring.c.o.d -o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.1/src/roaring.c In file included from /usr/include/c++/14/string:42, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.hpp:4, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp:1: In static member function 'static std::char_traits::char_type* std::char_traits::copy(char_type*, const char_type*, std::size_t)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:435:21, inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:430:7, inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy_chars(_CharT*, const _CharT*, const _CharT*) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:489:16, inlined from 'void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_construct(_InIterator, _InIterator, std::forward_iterator_tag) [with _FwdIterator = const char*; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.tcc:247:21, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, size_type, const _Alloc&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:632:14, inlined from 'GFA_Parser::GFA_line GFA_Parser::read(size_t&, bool&, bool)' at /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp:553:122: /usr/include/c++/14/bits/char_traits.h:427:56: warning: argument 2 null where non-null expected [-Wnonnull] 427 | return static_cast(__builtin_memcpy(__s1, __s2, __n)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/char_traits.h:427:56: note: in a call to built-in function 'void* __builtin_memcpy(void*, const void*, long unsigned int)' In file included from /usr/include/c++/14/string:42, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.hpp:4, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp:1: In static member function 'static std::char_traits::char_type* std::char_traits::copy(char_type*, const char_type*, std::size_t)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:435:21, inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:430:7, inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy_chars(_CharT*, const _CharT*, const _CharT*) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:489:16, inlined from 'void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_construct(_InIterator, _InIterator, std::forward_iterator_tag) [with _FwdIterator = const char*; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.tcc:247:21, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, size_type, const _Alloc&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:632:14, inlined from 'GFA_Parser::GFA_line GFA_Parser::read(size_t&, bool&, bool)' at /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp:553:122: /usr/include/c++/14/bits/char_traits.h:427:56: warning: argument 2 null where non-null expected [-Wnonnull] 427 | return static_cast(__builtin_memcpy(__s1, __s2, __n)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/char_traits.h:427:56: note: in a call to built-in function 'void* __builtin_memcpy(void*, const void*, long unsigned int)' [ 90%] Linking CXX shared library libbifrost.so cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_dynamic.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,--dependency-file=CMakeFiles/bifrost_dynamic.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbifrost.so.0 -o libbifrost.so.0 CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -lz cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbifrost.so.0 libbifrost.so.0 libbifrost.so make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' [ 90%] Built target bifrost_dynamic make -f src/CMakeFiles/Bifrost.dir/build.make src/CMakeFiles/Bifrost.dir/depend make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bifrost-1.3.1 /build/reproducible-path/bifrost-1.3.1/src /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src/CMakeFiles/Bifrost.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/Bifrost.dir/build.make src/CMakeFiles/Bifrost.dir/build make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' [ 93%] Building CXX object src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o -MF CMakeFiles/Bifrost.dir/Bifrost.cpp.o.d -o CMakeFiles/Bifrost.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Bifrost.cpp [ 96%] Linking CXX static library libbifrost.a cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bifrost_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_static.dir/link.txt --verbose=1 /usr/bin/ar qc libbifrost.a CMakeFiles/bifrost_static.dir/Bifrost.cpp.o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_static.dir/Kmer.cpp.o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o CMakeFiles/bifrost_static.dir/roaring.c.o /usr/bin/ranlib libbifrost.a make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' [ 96%] Built target bifrost_static [100%] Linking CXX executable Bifrost cd /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bifrost.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/Bifrost.dir/link.d CMakeFiles/Bifrost.dir/Bifrost.cpp.o -o Bifrost -Wl,-rpath,/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/src: libbifrost.so.0 -lz make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' [100%] Built target Bifrost make[2]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/bifrost-1.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bifrost-1.3.1 -B/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/bin/Bifrost -- Set non-toolchain portion of runtime path of "/build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/bin/Bifrost" to "" -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/lib/libbifrost.so.0 -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/lib/libbifrost.so -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/lib/libbifrost.a -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/BitContainer.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/BlockedBloomFilter.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/ColorSet.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/ColoredCDBG.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/ColoredCDBG.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Common.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/CompactedDBG.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/CompactedDBG.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/CompressedCoverage.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/CompressedSequence.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataAccessor.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataAccessor.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataManager.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataStorage.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataStorage.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/FASTX_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/File_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/GFA_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/IO.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Kmer.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerCovIndex.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerCovIndex.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerHashTable.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerStream.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Lock.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/MinimizerIndex.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/NeighborIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/NeighborIterator.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/RepHash.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Search.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/StreamCounter.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/TinyBitmap.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/TinyVector.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Unitig.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/UnitigIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/UnitigIterator.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/UnitigMap.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/UnitigMap.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/fastmod.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/getRSS.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/kseq.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/libpopcnt.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/minHashIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/roaring.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/roaring.hh -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/rw_spin_lock.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/strict_fstream.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/wyhash.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/zstr.hpp make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.1' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbifrost-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libbifrost0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/libbifrost.a debian/libbifrost-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/libbifrost.la debian/libbifrost-dev/usr/lib/aarch64-linux-gnu || true mv debian/tmp/usr/lib/libbifrost.so debian/libbifrost-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/lib/libbifrost.so.0 debian/libbifrost0/usr/lib/aarch64-linux-gnu PKGDEV=libbifrost-dev PKGSHL=libbifrost0 install -d -m 755 debian/libbifrost-dev/usr/include mv debian/tmp/usr/include/bifrost debian/libbifrost-dev/usr/include mv: cannot stat 'debian/tmp/usr/lib/libbifrost.la': No such file or directory make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.1' dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbifrost-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libbifrost-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbifrost0' in '../libbifrost0_1.3.1-1_arm64.deb'. dpkg-deb: building package 'bifrost-dbgsym' in '../bifrost-dbgsym_1.3.1-1_arm64.deb'. dpkg-deb: building package 'libbifrost0-dbgsym' in '../libbifrost0-dbgsym_1.3.1-1_arm64.deb'. dpkg-deb: building package 'bifrost' in '../bifrost_1.3.1-1_arm64.deb'. dpkg-deb: building package 'libbifrost-dev' in '../libbifrost-dev_1.3.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../bifrost_1.3.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../bifrost_1.3.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3386171 and its subdirectories I: Current time: Mon Mar 30 23:12:29 -12 2026 I: pbuilder-time-stamp: 1774955549 Wed Feb 26 04:49:31 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Wed Feb 26 04:49:31 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Wed Feb 26 04:52:21 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Wed Feb 26 04:52:22 UTC 2025 I: bifrost_1.3.1-1_arm64.changes: Format: 1.8 Date: Fri, 05 Jan 2024 09:14:39 +0100 Source: bifrost Binary: bifrost bifrost-dbgsym libbifrost-dev libbifrost0 libbifrost0-dbgsym Architecture: arm64 Version: 1.3.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bifrost - parallel construction, indexing and querying of de Bruijn graphs libbifrost-dev - static library and header files for libbifrost libbifrost0 - library for parallel construction, indexing and querying of de Br Changes: bifrost (1.3.1-1) unstable; urgency=medium . * Source-only upload. * New upstream version * Remove trailing whitespace in debian/copyright (routine-update) Checksums-Sha1: 60a809924a01802c91191e1905ad776c8f447501 2831880 bifrost-dbgsym_1.3.1-1_arm64.deb 2ee7382d586d5473fb60574f944aa8816028953d 7024 bifrost_1.3.1-1_arm64.buildinfo beb72055a441d372d4c137fb9796edf761aa5ed4 498124 bifrost_1.3.1-1_arm64.deb 89fb536670fa053b10c94721e1ca5c732b9047ac 590548 libbifrost-dev_1.3.1-1_arm64.deb 5ccab89d96b335a0f19d9a1c3a31afd6d9140940 3834988 libbifrost0-dbgsym_1.3.1-1_arm64.deb 232a93f8193241ed111819eaed791b87bb2f647a 394264 libbifrost0_1.3.1-1_arm64.deb Checksums-Sha256: b95f8e551f732a5c0484222a5bd7bb758b07d5925845b8a0bcd7817fdeec03ee 2831880 bifrost-dbgsym_1.3.1-1_arm64.deb b111ab3375af677a11b0f900fef41e429add057964b1060b8ef40f2d2423e255 7024 bifrost_1.3.1-1_arm64.buildinfo 8546d0369eda8dc76b186379150093670d22917d296645043eb9d88bb6766094 498124 bifrost_1.3.1-1_arm64.deb 5da3933645de916cb54a6fd2a7840d4083e5b7982b1e815575da5a8dc5e03472 590548 libbifrost-dev_1.3.1-1_arm64.deb 526e972d7b3987a0736805f24cb7a825cc4a6420ea14b0ce2af86bfcca6a6da7 3834988 libbifrost0-dbgsym_1.3.1-1_arm64.deb 1fe7bb94fbe5cdb15d3d5ad09dfb70d8613c556a09a884ecb764343f930f3fb0 394264 libbifrost0_1.3.1-1_arm64.deb Files: f5d6e0b661c8b096ee2b0138a9837276 2831880 debug optional bifrost-dbgsym_1.3.1-1_arm64.deb 2842a6da5551b2a3cbe26df19628f190 7024 python optional bifrost_1.3.1-1_arm64.buildinfo 5bc1c11b1094cc55b2cea78e2ce86aa8 498124 python optional bifrost_1.3.1-1_arm64.deb e52140ac63ee3ee6a22ff781448cd9e6 590548 libdevel optional libbifrost-dev_1.3.1-1_arm64.deb 0e619c9f50a8c8d99cfea32415810ad0 3834988 debug optional libbifrost0-dbgsym_1.3.1-1_arm64.deb 79166cbb7333ff55ff38ced30838cae5 394264 libs optional libbifrost0_1.3.1-1_arm64.deb Wed Feb 26 04:52:23 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_3-79074.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.v4O7YBv1/bifrost_1.3.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.v4O7YBv1/bifrost_1.3.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.v4O7YBv1/bifrost_1.3.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.v4O7YBv1/b1/bifrost_1.3.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.v4O7YBv1/b2/bifrost_1.3.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 219ms CPU time consumed: 220ms Wed Feb 26 04:52:23 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Wed Feb 26 04:52:23 UTC 2025 I: bifrost from trixie built successfully and reproducibly on arm64. Wed Feb 26 04:52:24 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Feb 26 04:52:24 UTC 2025 I: Submitting 8.0K b1/bifrost_1.3.1-1_arm64.buildinfo.asc Wed Feb 26 04:52:42 UTC 2025 I: Submitting 8.0K b2/bifrost_1.3.1-1_arm64.buildinfo.asc Wed Feb 26 04:52:55 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Feb 26 04:52:55 UTC 2025 I: Done submitting .buildinfo files. Wed Feb 26 04:52:55 UTC 2025 I: Removing signed bifrost_1.3.1-1_arm64.buildinfo.asc files: removed './b1/bifrost_1.3.1-1_arm64.buildinfo.asc' removed './b2/bifrost_1.3.1-1_arm64.buildinfo.asc'