Thu Feb 20 11:58:05 UTC 2025 I: starting to build btllib/trixie/arm64 on jenkins on '2025-02-20 11:57' Thu Feb 20 11:58:05 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/60938/console.log Thu Feb 20 11:58:05 UTC 2025 I: Downloading source for trixie/btllib=1.4.10+dfsg-1 --2025-02-20 11:58:05-- http://deb.debian.org/debian/pool/main/b/btllib/btllib_1.4.10%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2161 (2.1K) [text/prs.lines.tag] Saving to: ‘btllib_1.4.10+dfsg-1.dsc’ 0K .. 100% 282M=0s 2025-02-20 11:58:05 (282 MB/s) - ‘btllib_1.4.10+dfsg-1.dsc’ saved [2161/2161] Thu Feb 20 11:58:05 UTC 2025 I: btllib_1.4.10+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: btllib Binary: libbtllib-dev, btllib-tools Architecture: any Version: 1.4.10+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bcgsc/btllib Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/btllib Vcs-Git: https://salsa.debian.org/med-team/btllib.git Build-Depends: debhelper-compat (= 13), dh-exec, meson, ninja-build, libcpptoml-dev, libomp-dev, samtools Package-List: btllib-tools deb science optional arch=any libbtllib-dev deb libdevel optional arch=any-amd64,arm64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha Checksums-Sha1: b4dc0dbae9ca4543be0ecf20f48396fadcdeb6a2 209360 btllib_1.4.10+dfsg.orig.tar.xz 0551566c884a2b7acb54d90bc8aee15c56db73b7 3268 btllib_1.4.10+dfsg-1.debian.tar.xz Checksums-Sha256: 6eba5c5626680c3edf8dda9de6af05b401a560986ea77770c14c053e7ba9743c 209360 btllib_1.4.10+dfsg.orig.tar.xz cce781d2defaf1b8192af143662f5dc1fc172f3a44c3d977e08dc33bc57536ff 3268 btllib_1.4.10+dfsg-1.debian.tar.xz Files: e3ce32eaf3f812264056fe26758b7483 209360 btllib_1.4.10+dfsg.orig.tar.xz 79076576244cd8561bfda4c8e55b5b45 3268 btllib_1.4.10+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPbc0sRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFPzw//TYsmwEOKs9yojPq6Ee9leadja7dxJSjy QSQGunYss5zzGubViyhMZKwtWQrhxj7eMtWDEcZzruC76CNNEUuSkgKQm7PimdSM INSOx0iFAJX0qcHadLrdqP3lQU6ZX4fIlD/KSZ8vTU+Cv+1jJhrj2lByatE3r8TO ZgnXLaOuIBLwrbrgDkwdhNWvs1G3plcCY6WWObpro4CCaIrLGQ0lv3Rl4ucKMgAs wplM9vQm9GCHekXHU9/iXU5nlGC/161CaXn0PIvhw78LMcVGnUeRLavbhoNgHjlE lrrU2zshltXbqjq7Y3ccMSM8Sqe9u3U6NJ2emfixQFx6YWFaEJ5UgWAvwndg9qwn YxGIBco9iH3wpqGgYX8nkSiHlptK7WLsSR1Z48Vw2rfJ0upDIYAfvMsVfG9FMs1r vNhwCiBtxnbkjhp79laA5P7ouMPziROuMzBkk+HMAaPPfyswFeIJ7U3xDLQ/Fdf2 JAn1+nTxKoNRo98GgiJTlID/OOYD9ppi0xsfaJrcnsQii54J77LnapLbdcCZPiJt mzPAPPRLP+fZFFm3tkE0iJ6PQeVZPKtygfre3Y6iCjPf1PIvrSk9GogBYTOoyPAh lfOLCNPS2Ayunj/CqQ6pQmROGrw8f0pdvMCz0NL+/Wz4SJAAC8QWWUlDKY/lnMnA /1BdXWdxUGs= =1qap -----END PGP SIGNATURE----- Thu Feb 20 11:58:05 UTC 2025 I: Checking whether the package is not for us Thu Feb 20 11:58:05 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Feb 20 11:58:05 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Feb 20 11:59:03 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Feb 19 23:58:08 -12 2025 I: pbuilder-time-stamp: 1740052688 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [btllib_1.4.10+dfsg-1.dsc] I: copying [./btllib_1.4.10+dfsg.orig.tar.xz] I: copying [./btllib_1.4.10+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./btllib_1.4.10+dfsg-1.dsc: unsupported subcommand dpkg-source: info: extracting btllib in btllib-1.4.10+dfsg dpkg-source: info: unpacking btllib_1.4.10+dfsg.orig.tar.xz dpkg-source: info: unpacking btllib_1.4.10+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find_object_files_at_right_loc.patch dpkg-source: info: applying use_debian_packaged_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3869423/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='85c7c755322249ed8357d823b6afcf14' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3869423' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Mjkfm2T3/pbuilderrc_pf6v --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Mjkfm2T3/b1 --logfile b1/build.log btllib_1.4.10+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3869423/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, meson, ninja-build, libcpptoml-dev, libomp-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on libcpptoml-dev; however: Package libcpptoml-dev is not installed. pbuilder-satisfydepends-dummy depends on libomp-dev; however: Package libomp-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libomp-19-dev{a} libomp-dev{a} libomp5-19{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libz3-4{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 68.4 MB of archives. After unpacking 335 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 36 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-exec arm64 0.30+b1 [25.8 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libcpptoml-dev all 0.1.1-3 [180 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 56 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.12.0+git20250209.89ed161+ds-1 [336 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libllvm19 arm64 1:19.1.7-1+b1 [23.3 MB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5+20250125-2 [96.2 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libomp5-19 arm64 1:19.1.7-1+b1 [567 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.2-1 [1970 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libomp-19-dev arm64 1:19.1.7-1+b1 [1151 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libomp-dev arm64 1:19.0-63 [5768 B] Get: 80 http://deb.debian.org/debian trixie/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 meson all 1.7.0-1 [639 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 samtools arm64 1.21-1 [637 kB] Fetched 68.4 MB in 1s (136 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/btllib-1.4.10+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../btllib_1.4.10+dfsg-1_source.changes dpkg-buildpackage: info: source package btllib dpkg-buildpackage: info: source version 1.4.10+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/btllib-1.4.10+dfsg Build dir: /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu Build type: native build Project name: btllib Project version: 1.4.9 C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-16) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.44 Host machine cpu family: aarch64 Host machine cpu: aarch64 Configuring config.hpp using configuration Run-time dependency threads found: YES Run-time dependency OpenMP found: YES 4.5 Program samtools found: YES (/usr/bin/samtools) Program gzip found: YES (/usr/bin/gzip) Program xz found: YES (/usr/bin/xz) Program bzip2 found: YES (/usr/bin/bzip2) Program tar found: YES (/usr/bin/tar) Program swig found: NO Program doxygen found: NO WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 Program python3 found: YES (/usr/bin/python3) Program python3-config found: NO Message: python3-config not found, skipping Python wrappers. Build targets in project: 23 btllib 1.4.9 User defined options buildtype : plain libdir : lib/aarch64-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j12 -v [1/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o.d -o 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-I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_fastq_module.cpp [5/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 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-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq.cpp [7/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash_consts.cpp [8/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_sam_module.cpp [9/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/cstring.cpp [10/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 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-I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -MF tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o.d -o tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/util.cpp [15/51] c++ -Itests/seq_reader_gfa2_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. 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libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/data_stream.cpp [18/51] c++ -Itests/seq_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -MF tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o.d -o tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq.cpp [19/51] c++ -Itests/seq_reader_multiline_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -MF tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o.d -o tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_multiline_fastq_module.cpp [20/51] c++ -Itests/seq_reader_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -MF tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o.d -o tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_fasta_module.cpp [21/51] c++ -Itests/seq_reader_multiline_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -MF tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o.d -o 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-Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader.cpp [24/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 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tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o.d -o tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/data_stream.cpp [27/51] c++ -Itests/seq_writer_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -MF tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o.d -o tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_writer.cpp [28/51] c++ -Itests/seq_reader_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -MF tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o.d -o tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_fastq_module.cpp [29/51] c++ -Itests/nthash_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -MF tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o.d -o tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/nthash.cpp [30/51] c++ -Itests/bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -MF tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o.d -o tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/bloom_filter.cpp [31/51] c++ -Irecipes/indexlr.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/bloom_filter.cpp [33/51] rm -f libbtllib.a && gcc-ar csrD libbtllib.a libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o [34/51] c++ -o tests/seq_test tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [35/51] c++ -o tests/util_test tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [36/51] c++ -o tests/seq_reader_gfa2_module_test tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [37/51] c++ -o tests/seq_reader_fastq_module_test tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [38/51] c++ -o tests/seq_reader_fasta_module_test tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [39/51] c++ -o tests/seq_reader_multiline_fastq_module_test tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [40/51] c++ -o tests/seq_reader_sam_module_test tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [41/51] c++ -o tests/seq_writer_test tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [42/51] c++ -o tests/seq_reader_multiline_fasta_module_test tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [43/51] c++ -o recipes/indexlr recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [44/51] c++ -o tests/cstring_test tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [45/51] c++ -o tests/nthash_test tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [46/51] c++ -o tests/data_stream_test tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [47/51] c++ -o tests/bloom_filter_test tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [48/51] c++ -Itests/counting_bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -MF tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o.d -o tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/counting_bloom_filter.cpp [49/51] c++ -o tests/counting_bloom_filter_test tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [50/51] c++ -Itests/indexlr_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -MF tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o.d -o tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/indexlr.cpp [51/51] c++ -o tests/indexlr_test tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/btllib-1.4.10+dfsg' cp -a tests/ obj-*/ dh_auto_test cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=12 meson test --verbose ninja: Entering directory `/build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu' ninja: no work to do. 1/15 util RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=212 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/util_test 2/15 seq_writer RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=69 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/seq_writer_test 3/15 seq_reader_sam_module RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=167 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/seq_reader_sam_module_test 4/15 seq_reader_multiline_fastq_module RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=80 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/seq_reader_multiline_fastq_module_test 5/15 seq_reader_multiline_fasta_module RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=188 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/seq_reader_multiline_fasta_module_test 6/15 seq_reader_gfa2_module RUNNING >>> MALLOC_PERTURB_=248 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/seq_reader_gfa2_module_test 7/15 seq_reader_fastq_module RUNNING >>> MALLOC_PERTURB_=183 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/seq_reader_fastq_module_test 8/15 seq_reader_fasta_module RUNNING >>> MALLOC_PERTURB_=192 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/seq_reader_fasta_module_test 9/15 seq RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=116 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/seq_test 10/15 nthash RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=131 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/nthash_test 11/15 indexlr RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=21 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/indexlr_test 12/15 data_stream RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=10 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/data_stream_test 1/15 util OK 0.10s 6/15 seq_reader_gfa2_module OK 0.07s 9/15 seq OK 0.05s 13/15 cstring RUNNING >>> MALLOC_PERTURB_=61 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/cstring_test 14/15 counting_bloom_filter RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=35 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/counting_bloom_filter_test 15/15 bloom_filter RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=113 /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/tests/bloom_filter_test 10/15 nthash OK 0.07s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: ./tests/nthash.cpp: Testing k-mer hash values ./tests/nthash.cpp: Testing k-mer rolling ./tests/nthash.cpp: Testing k-mer rolling vs ntbase hash values ./tests/nthash.cpp: Testing canonical hashing ./tests/nthash.cpp: Testing k-mer back rolling ./tests/nthash.cpp: Testing k-mer peeking ./tests/nthash.cpp: Testing skipping Ns ./tests/nthash.cpp: Testing base substitution Testing RNA ./tests/nthash.cpp: Testing block parsing ./tests/nthash.cpp: Testing spaced seed hash values ./tests/nthash.cpp: Testing spaced seeds ./tests/nthash.cpp: Testing spaced seed back roll Testing rolling spaced seeds vs masked hashing Testing reset function ./tests/nthash.cpp: Testing canonical hashing in spaced seeds ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 8/15 seq_reader_fasta_module OK 0.09s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small FASTA Iteration 2 Test small FASTA Iteration 3 Test small FASTA ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 13/15 cstring OK 0.03s 15/15 bloom_filter OK 0.05s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing BloomFilter Testing KmerBloomFilter Testing SeedBloomFilter Testing KmerBloomFilter with multiple threads False positives = 0 ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 14/15 counting_bloom_filter OK 0.06s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing CountingBloomFilter Testing KmerCountingBloomFilter Testing KmerCountingBloomfilter with multiple threads False positives = 0 Seqs with more than 1 presence = 90 ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 12/15 data_stream OK 0.09s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Test .gz write Test .gz read Test .xz write Test .xz read ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 5/15 seq_reader_multiline_fasta_module OK 0.16s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test multiline FASTA Test random multiline FASTA file JKBYNERWWVSEEWAZGGXKPISLMPIIFRABKPQNDRQPWRKEQJWXCSSPAYQFMBJVWJXJ Iteration 2 Test multiline FASTA Test random multiline FASTA file JGNIUTCVHGXEWLESBLCBJSXWJBGWQZUOBZARSMQWXHHVYKSIKXTPMVQYQMLPOOIX Iteration 3 Test multiline FASTA Test random multiline FASTA file CTXPQZNFEXWENKYLGPIEYVJPMWLTCGOJDKYNMRQRZQQPMMQQWZSXNIPHNSCQEPOF ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 11/15 indexlr OK 0.13s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing on empty file [2025-02-19 23:58:52][WARNING] ./tests/empty.fa is empty. Testing without Bloom filters Testing with Bloom filters ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 4/15 seq_reader_multiline_fastq_module OK 0.28s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test multiline FASTQ Test random multiline FASTQ file UJEKRKGPGFDBUGIVDZSUKTCTHGMZRRXPMNZSFFLWUSUFCBTDNHJCUXMNBHGHXSON Iteration 2 Test multiline FASTQ Test random multiline FASTQ file QWYPDASGGDNVDLWLFNETIEHWZBEWAUFECUCYNCUGNIWOERLTIWCTSCBSBTWYAKWJ Iteration 3 Test multiline FASTQ Test random multiline FASTQ file EYEZBSBYVOHXRRDZQTSXVIIESWJNNSLHMTDXUSPKXJCKRVUURRVVOKIFAZTSQNMT ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 3/15 seq_reader_sam_module OK 0.35s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small SAM [2025-02-19 23:58:52][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2025-02-19 23:58:52][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads Iteration 2 Test small SAM [2025-02-19 23:58:52][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2025-02-19 23:58:52][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads Iteration 3 Test small SAM [2025-02-19 23:58:52][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2025-02-19 23:58:52][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 7/15 seq_reader_fastq_module OK 0.41s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block Iteration 2 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block Iteration 3 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 2/15 seq_writer OK 2.79s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test FASTA Test FASTQ Test random file Test random file in parallel Iteration 2 Test FASTA Test FASTQ Test random file Test random file in parallel Iteration 3 Test FASTA Test FASTQ Test random file Test random file in parallel ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― Ok: 15 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/reproducible-path/btllib-1.4.10+dfsg/obj-aarch64-linux-gnu/meson-logs/testlog.txt make[1]: Leaving directory '/build/reproducible-path/btllib-1.4.10+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && DESTDIR=/build/reproducible-path/btllib-1.4.10\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing libbtllib.a to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/lib Installing recipes/indexlr to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/bin Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/util.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/status.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_writer.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_sam_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_multiline_fastq_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_multiline_fasta_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_gfa2_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_fastq_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_fasta_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/process_pipeline.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/order_queue.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/nthash_lowlevel.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/nthash_consts.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/nthash.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/mi_bloom_filter.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/indexlr.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/graph.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/data_stream.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/cstring.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/counting_bloom_filter.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/bloom_filter.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Running custom install script '/build/reproducible-path/btllib-1.4.10+dfsg/scripts/install-cpptoml' Running custom install script '/build/reproducible-path/btllib-1.4.10+dfsg/scripts/install-sdsl-lite' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbtllib-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbtllib-dev' in '../libbtllib-dev_1.4.10+dfsg-1_arm64.deb'. dpkg-deb: building package 'btllib-tools' in '../btllib-tools_1.4.10+dfsg-1_arm64.deb'. dpkg-deb: building package 'btllib-tools-dbgsym' in '../btllib-tools-dbgsym_1.4.10+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../btllib_1.4.10+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../btllib_1.4.10+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3869423 and its subdirectories I: Current time: Wed Feb 19 23:59:01 -12 2025 I: pbuilder-time-stamp: 1740052741 Thu Feb 20 11:59:03 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Feb 20 11:59:03 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Feb 20 12:00:27 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Feb 20 12:00:28 UTC 2025 I: btllib_1.4.10+dfsg-1_arm64.changes: Format: 1.8 Date: Thu, 02 Feb 2023 08:10:47 +0100 Source: btllib Binary: btllib-tools btllib-tools-dbgsym libbtllib-dev Architecture: arm64 Version: 1.4.10+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: btllib-tools - Bioinformatics Technology Lab common code library tools libbtllib-dev - Bioinformatics Technology Lab common code library Closes: 1022772 Changes: btllib (1.4.10+dfsg-1) unstable; urgency=medium . * Exclude 32bit architectures since upstream confirmed these are not supported. Closes: #1022772 * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 0f92cff6b95e20f1f674187d09a45bad183ef550 2320436 btllib-tools-dbgsym_1.4.10+dfsg-1_arm64.deb de83051a2806108eaeb57c768902dbb12e274bd8 138548 btllib-tools_1.4.10+dfsg-1_arm64.deb 9816c71f9d167078b0185fe72cad1d36498b405c 7278 btllib_1.4.10+dfsg-1_arm64.buildinfo 83b764dc32e6c2732c3872a8c42a6e3c17637aaa 183980 libbtllib-dev_1.4.10+dfsg-1_arm64.deb Checksums-Sha256: 26c9648d279ccc6c06de3e1e58fc5773d2e81fe5fc254da58e6173868717dc67 2320436 btllib-tools-dbgsym_1.4.10+dfsg-1_arm64.deb 6b40f724b476090bcb342f369c5f69e515e22d54d58324a8da4fd4fd42e0576d 138548 btllib-tools_1.4.10+dfsg-1_arm64.deb 79a49f6cb8f99aedd52fc8f5cb512b8a7b95f1e6798d92ef86a9db1bb6bae38c 7278 btllib_1.4.10+dfsg-1_arm64.buildinfo d070904f96642fbcb09bee8283bafa0373b49a80bf50860a7c141ebd33243179 183980 libbtllib-dev_1.4.10+dfsg-1_arm64.deb Files: 1e4428dd9ffdf0722ac29912ec2591b8 2320436 debug optional btllib-tools-dbgsym_1.4.10+dfsg-1_arm64.deb eb4f2a7b7ad0120aeeccb5080df8b8df 138548 science optional btllib-tools_1.4.10+dfsg-1_arm64.deb 08e81c4e30068e0bb5b9608bf26bd03a 7278 science optional btllib_1.4.10+dfsg-1_arm64.buildinfo 4133e6412921b6296d5e96d866d3b01c 183980 libdevel optional libbtllib-dev_1.4.10+dfsg-1_arm64.deb Thu Feb 20 12:00:29 UTC 2025 I: diffoscope 288 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-60938.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Mjkfm2T3/btllib_1.4.10+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Mjkfm2T3/btllib_1.4.10+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Mjkfm2T3/btllib_1.4.10+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Mjkfm2T3/b1/btllib_1.4.10+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Mjkfm2T3/b2/btllib_1.4.10+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 226ms CPU time consumed: 226ms Thu Feb 20 12:00:29 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Thu Feb 20 12:00:29 UTC 2025 I: btllib from trixie built successfully and reproducibly on arm64. Thu Feb 20 12:00:30 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Feb 20 12:00:30 UTC 2025 I: Submitting 8.0K b1/btllib_1.4.10+dfsg-1_arm64.buildinfo.asc Thu Feb 20 12:00:32 UTC 2025 I: Submitting 8.0K b2/btllib_1.4.10+dfsg-1_arm64.buildinfo.asc Thu Feb 20 12:00:33 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Feb 20 12:00:33 UTC 2025 I: Done submitting .buildinfo files. Thu Feb 20 12:00:33 UTC 2025 I: Removing signed btllib_1.4.10+dfsg-1_arm64.buildinfo.asc files: removed './b1/btllib_1.4.10+dfsg-1_arm64.buildinfo.asc' removed './b2/btllib_1.4.10+dfsg-1_arm64.buildinfo.asc'