Tue Feb 25 08:21:19 UTC 2025 I: starting to build cnvkit/trixie/arm64 on jenkins on '2025-02-25 08:21' Tue Feb 25 08:21:19 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/61519/console.log Tue Feb 25 08:21:19 UTC 2025 I: Downloading source for trixie/cnvkit=0.9.12-1 --2025-02-25 08:21:19-- http://deb.debian.org/debian/pool/main/c/cnvkit/cnvkit_0.9.12-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2483 (2.4K) [text/prs.lines.tag] Saving to: ‘cnvkit_0.9.12-1.dsc’ 0K .. 100% 336M=0s 2025-02-25 08:21:19 (336 MB/s) - ‘cnvkit_0.9.12-1.dsc’ saved [2483/2483] Tue Feb 25 08:21:19 UTC 2025 I: cnvkit_0.9.12-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cnvkit Binary: cnvkit Architecture: all Version: 0.9.12-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Steffen Moeller , Olivier Sallou Homepage: https://cnvkit.readthedocs.org Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/cnvkit Vcs-Git: https://salsa.debian.org/med-team/cnvkit.git Testsuite: autopkgtest, autopkgtest-pkg-pybuild Testsuite-Triggers: poppler-utils Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, pybuild-plugin-pyproject, python3-pytest , python3-pyfaidx , python3-biopython , python3-pandas , python3-numpy , python3-pysam , python3-scipy , python3-matplotlib , python3-pomegranate (>= 0.15) , r-bioc-dnacopy , poppler-utils Package-List: cnvkit deb science optional arch=all Checksums-Sha1: ee266d2a8d589ded32f0293c8a65f3d8259742d3 32117196 cnvkit_0.9.12.orig.tar.gz 254d581ad8bd09437a19e9e532a1db031b8ad0ef 20816 cnvkit_0.9.12-1.debian.tar.xz Checksums-Sha256: 39d65ba3d9c541dfd80986ace298b2d521067d1b81edef7169196b8dcc5d63d5 32117196 cnvkit_0.9.12.orig.tar.gz 8de120435691ded18aa5f3ad772237cb759be87ee45793507ec0df2ac796492d 20816 cnvkit_0.9.12-1.debian.tar.xz Files: 93b29a400a20011da1cf159619d4fe75 32117196 cnvkit_0.9.12.orig.tar.gz 6ca92cc523b72e36a32df62df3834bb4 20816 cnvkit_0.9.12-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmekxkASHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+biMC0QAJqQ4abgxIvvfm+8BC6J7YGlef8IgyzE G8aAvRq9NyYlQogPTobX0BGzuiIx9luYRl2jDCfHgZTvFzrwfp1ih6ku7WitHkIZ lvxzENsOpwFBpt7UZUF9wNpnT8zm+9m1AU/rx9K8cOQOvFztSssxgqKEdV4ptzhD t/BOu0pnYajoX4rUufL9zGRzKcVbPEvYws5OuUvtvfDheF7gMOFMHNWGTDrKEGpz owzlx9XUwDxNelJp9gcJQo3oDfi0bUu72ep705HI5T5HWTtercF/IcanRmjfPlHm K95MPu5KYE6UUOu4HbnzJN5NQAqMXYdGPH3kosETjVXITIxGDZEMEP2XW/xtP4yq mGTCj3IVMHfkG+qx2IfVMJYxPbfsBLNFElmr9EKFNG71reixOrSxTDIavJSJ2PJ9 2xC3iOu3HSR4XZPuIeJ5DMaCZ4aYrHmTNirCAbZ/X7VBZibsBsab7qBCHfgBjHmI K2gv0z+ugv25h9OApX5IPslyh1G5LH+Zf4HtnpwJEhPRFo74QcPHqfL26AGd9iTq EYAS3fvGibUnvO0i/X8D+3+9HztjHbdqvgfCSEY1DArZc+yduH3BLr2Efnbw/lK8 mg/vscjxEH32c2zzHEv2jHLIQ6ZlioE4HkWkAAfsjdwcdXc3M8m7L0CiyKTtt/Ln Yxk/bYfUdjyQ =aKlL -----END PGP SIGNATURE----- Tue Feb 25 08:21:19 UTC 2025 I: Checking whether the package is not for us Tue Feb 25 08:21:19 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Feb 25 08:21:19 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Feb 25 08:39:26 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 24 20:21:22 -12 2025 I: pbuilder-time-stamp: 1740471682 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cnvkit_0.9.12-1.dsc] I: copying [./cnvkit_0.9.12.orig.tar.gz] I: copying [./cnvkit_0.9.12-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./cnvkit_0.9.12-1.dsc: unsupported subcommand dpkg-source: info: extracting cnvkit in cnvkit-0.9.12 dpkg-source: info: unpacking cnvkit_0.9.12.orig.tar.gz dpkg-source: info: unpacking cnvkit_0.9.12-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3compat.patch dpkg-source: info: applying controldir dpkg-source: info: applying ignore-warnings-in-tests.patch dpkg-source: info: applying 0004-Remove-np.asfarray-np.float_-usage-to-support-numpy-.patch dpkg-source: info: applying 0005-Another-numpy-2.x-fix.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3978017/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='3a9a01708425434892f479d3c2f4363e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3978017' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gfz4YOv0/pbuilderrc_hq6R --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gfz4YOv0/b1 --logfile b1/build.log cnvkit_0.9.12-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3978017/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, pybuild-plugin-pyproject, python3-pytest, python3-pyfaidx, python3-biopython, python3-pandas, python3-numpy, python3-pysam, python3-scipy, python3-matplotlib, python3-pomegranate (>= 0.15), r-bioc-dnacopy, poppler-utils dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19916 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfaidx; however: Package python3-pyfaidx is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pomegranate (>= 0.15); however: Package python3-pomegranate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dnacopy; however: Package r-bioc-dnacopy is not installed. pbuilder-satisfydepends-dummy depends on poppler-utils; however: Package poppler-utils is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libassuan9{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgpgme11t64{a} libgpgmepp6t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libice6{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libopenjp2-7{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpoppler145{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} pinentry-curses{a} po-debconf{a} poppler-utils{a} procps{a} pybuild-plugin-pyproject{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-importlib-metadata{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pomegranate{a} python3-pyfaidx{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pysam{a} python3-pytest{a} python3-pytz{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} r-base-core{a} r-bioc-biocgenerics{a} r-bioc-dnacopy{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} ucf{a} unicode-data{a} unzip{a} w3c-sgml-lib{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra gnupg-utils gpg-wks-client gpgv gpgv-from-sq isympy-common javascript-common krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpg-error-l10n libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx ncbi-blast+ poppler-data psmisc publicsuffix python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-dev python3-gdal python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pydot python3-pygments python3-pygraphviz python3-tables r-base-dev r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 246 newly installed, 0 to remove and 0 not upgraded. Need to get 192 MB of archives. After unpacking 861 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-2 [135 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:2.2.3+ds-2 [4134 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.9-1 [810 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.9-1 [1941 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20241223 [164 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 38 http://deb.debian.org/debian trixie/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 39 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0050 [42.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.46-4 [276 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 56 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 70 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-2 [2726 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 77 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-importlib-metadata all 8.6.1-1 [21.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libassuan9 arm64 3.0.1-2 [58.1 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 gpgconf arm64 2.2.46-1+b1 [115 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libksba8 arm64 1.6.7-2+b1 [125 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libnpth0t64 arm64 1.8-2 [22.8 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 dirmngr arm64 2.2.46-1+b1 [344 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-2 [462 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.3-1 [190 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 gnupg-l10n all 2.2.46-1 [702 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 gpg arm64 2.2.46-1+b1 [481 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 pinentry-curses arm64 1.3.1-2 [83.5 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 gpg-agent arm64 2.2.46-1+b1 [231 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 gpgsm arm64 2.2.46-1+b1 [232 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 gnupg all 2.2.46-1 [376 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 129 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.12.1-2 [336 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.83.3-2 [1421 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libgpgme11t64 arm64 1.24.2-1 [329 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libgpgmepp6t64 arm64 1.24.2-1 [328 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libnspr4 arm64 2:4.36-1 [102 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libnss3 arm64 2:3.108-1 [1293 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.56.1-1 [213 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [52.8 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [33.8 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libpaper2 arm64 2.2.5-0.3+b1 [16.6 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 2.2.5-0.3+b1 [16.3 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libpoppler145 arm64 25.01.0-4 [1889 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.9-1 [1909 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 poppler-utils arm64 25.01.0-4 [192 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 python3-toml all 0.10.2-1 [16.2 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 python3-build all 1.2.2-1 [36.0 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.9-1 [681 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.1-2 [1056 B] Get: 196 http://deb.debian.org/debian trixie/main arm64 python3-attr all 25.1.0-1 [68.7 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 python3.12-tk arm64 3.12.9-1 [111 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 python3.13-tk arm64 3.13.2-1 [102 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.13.1-1 [9464 B] Get: 201 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 11.1.0-5 [81.6 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 11.1.0-5 [514 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 206 http://deb.debian.org/debian trixie/main arm64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 python3-biopython arm64 1.85+dfsg-2 [1662 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 213 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 python3-pytz all 2025.1-3 [150 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2025.1-3 [4004 B] Get: 217 http://deb.debian.org/debian trixie/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-6 [95.1 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.3.1-1 [1428 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.14.1-4 [18.5 MB] Get: 222 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.55.3-2 [1501 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 228 http://deb.debian.org/debian trixie/main arm64 python3-joblib all 1.4.2-3 [216 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.7-3 [71.5 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3+b2 [5583 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 python3-networkx all 3.2.1-5 [13.0 MB] Get: 233 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-8 [6029 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 python3-yaml arm64 6.0.2-1+b1 [148 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 python3-pomegranate arm64 0.15.0-1 [3653 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 python3-pyfaidx all 0.8.1.3-1 [29.1 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.23.0+ds-1 [4160 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 243 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 245 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 r-bioc-dnacopy arm64 1.80.0-2 [496 kB] Fetched 192 MB in 2s (119 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19916 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20250 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21260 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package python3-numpy-dev:arm64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-2_arm64.deb ... Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../002-libblas3_3.12.1-2_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../003-libgfortran5_14.2.0-16_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-16) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../004-liblapack3_3.12.1-2_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-2_arm64.deb ... Unpacking python3-numpy (1:2.2.3+ds-2) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../006-libpython3.12-minimal_3.12.9-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.9-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../007-python3.12-minimal_3.12.9-1_arm64.deb ... Unpacking python3.12-minimal (3.12.9-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../008-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../009-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../010-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../011-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../012-openssl_3.4.1-1_arm64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../013-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../014-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../015-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../016-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../017-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../018-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../019-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../020-bsdextrautils_2.40.4-4_arm64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../021-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../022-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../023-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../024-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../025-ucf_3.0050_all.deb ... Moving old data out of the way Unpacking ucf (3.0050) ... Selecting previously unselected package m4. Preparing to unpack .../026-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../027-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../028-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../029-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../030-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../031-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../032-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../033-libpng16-16t64_1.6.46-4_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.46-4) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../034-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../037-libfontenc1_1%3a1.1.8-1+b2_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../038-x11-common_1%3a7.7+24_all.deb ... Unpacking x11-common (1:7.7+24) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../039-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../040-xfonts-utils_1%3a7.7+7_arm64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../041-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../042-fontconfig-config_2.15.0-2_arm64.deb ... Unpacking fontconfig-config (2.15.0-2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../043-libfontconfig1_2.15.0-2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-2) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../044-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../045-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../046-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../047-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../048-libx11-6_2%3a1.8.10-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.10-2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../049-libxrender1_1%3a0.9.10-1.1+b4_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1+b4) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../050-libxft2_2.3.6-1+b4_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b4) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../051-libxext6_2%3a1.3.4-1+b3_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../052-libxss1_1%3a1.2.3-1+b3_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../053-libtk8.6_8.6.16-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.16-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../054-tk8.6-blt2.5_2.5.3+dfsg-7+b1_arm64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Selecting previously unselected package blt. Preparing to unpack .../055-blt_2.5.3+dfsg-7+b1_arm64.deb ... Unpacking blt (2.5.3+dfsg-7+b1) ... Selecting previously unselected package cython3. Preparing to unpack .../056-cython3_3.0.11+dfsg-2_arm64.deb ... Unpacking cython3 (3.0.11+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../057-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../058-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../059-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../060-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../061-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../062-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../063-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../064-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../065-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../066-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../067-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../068-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../069-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../070-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../071-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../072-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../073-python3-more-itertools_10.6.0-1_all.deb ... Unpacking python3-more-itertools (10.6.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../074-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../075-python3-importlib-metadata_8.6.1-1_all.deb ... Unpacking python3-importlib-metadata (8.6.1-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../076-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../077-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../078-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../079-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../080-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../081-python3-pkg-resources_75.8.0-1_all.deb ... Unpacking python3-pkg-resources (75.8.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../082-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../083-python3-setuptools_75.8.0-1_all.deb ... Unpacking python3-setuptools (75.8.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../084-dh-python_6.20250108_all.deb ... Unpacking dh-python (6.20250108) ... Selecting previously unselected package libgpg-error0:arm64. Preparing to unpack .../085-libgpg-error0_1.51-3_arm64.deb ... Unpacking libgpg-error0:arm64 (1.51-3) ... Selecting previously unselected package libassuan9:arm64. Preparing to unpack .../086-libassuan9_3.0.1-2_arm64.deb ... Unpacking libassuan9:arm64 (3.0.1-2) ... Selecting previously unselected package libgcrypt20:arm64. Preparing to unpack .../087-libgcrypt20_1.11.0-7_arm64.deb ... Unpacking libgcrypt20:arm64 (1.11.0-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../088-gpgconf_2.2.46-1+b1_arm64.deb ... Unpacking gpgconf (2.2.46-1+b1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../089-libidn2-0_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../090-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../091-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../092-libgnutls30t64_3.8.9-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-2) ... Selecting previously unselected package libksba8:arm64. Preparing to unpack .../093-libksba8_1.6.7-2+b1_arm64.deb ... Unpacking libksba8:arm64 (1.6.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../094-libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../095-libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../096-libldap2_2.6.9+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnpth0t64:arm64. Preparing to unpack .../097-libnpth0t64_1.8-2_arm64.deb ... Unpacking libnpth0t64:arm64 (1.8-2) ... Selecting previously unselected package dirmngr. Preparing to unpack .../098-dirmngr_2.2.46-1+b1_arm64.deb ... Unpacking dirmngr (2.2.46-1+b1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../099-fontconfig_2.15.0-2_arm64.deb ... Unpacking fontconfig (2.15.0-2) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../100-fonts-lyx_2.4.3-1_all.deb ... Unpacking fonts-lyx (2.4.3-1) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../101-gnupg-l10n_2.2.46-1_all.deb ... Unpacking gnupg-l10n (2.2.46-1) ... Selecting previously unselected package gpg. Preparing to unpack .../102-gpg_2.2.46-1+b1_arm64.deb ... Unpacking gpg (2.2.46-1+b1) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../103-pinentry-curses_1.3.1-2_arm64.deb ... Unpacking pinentry-curses (1.3.1-2) ... Selecting previously unselected package gpg-agent. Preparing to unpack .../104-gpg-agent_2.2.46-1+b1_arm64.deb ... Unpacking gpg-agent (2.2.46-1+b1) ... Selecting previously unselected package gpgsm. Preparing to unpack .../105-gpgsm_2.2.46-1+b1_arm64.deb ... Unpacking gpgsm (2.2.46-1+b1) ... Selecting previously unselected package gnupg. Preparing to unpack .../106-gnupg_2.2.46-1_all.deb ... Unpacking gnupg (2.2.46-1) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../107-libpixman-1-0_0.44.0-3_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.44.0-3) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../108-libxcb-render0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../109-libxcb-shm0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../110-libcairo2_1.18.2-2_arm64.deb ... Unpacking libcairo2:arm64 (1.18.2-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../111-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../112-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../113-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../114-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../115-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../116-libgssapi-krb5-2_1.21.3-4_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-4) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../117-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../118-libnghttp3-9_1.6.0-2_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../119-libngtcp2-16_1.9.1-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../120-libngtcp2-crypto-gnutls8_1.9.1-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../121-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../122-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../123-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../124-libcurl3t64-gnutls_8.12.1-2_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.12.1-2) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../125-libcurl4t64_8.12.1-2_arm64.deb ... Unpacking libcurl4t64:arm64 (8.12.1-2) ... Selecting previously unselected package libdatrie1:arm64. Preparing to unpack .../126-libdatrie1_0.2.13-3+b1_arm64.deb ... Unpacking libdatrie1:arm64 (0.2.13-3+b1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../127-libdeflate0_1.23-1+b1_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-1+b1) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../128-libfribidi0_1.0.16-1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.16-1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../129-libglib2.0-0t64_2.83.3-2_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.83.3-2) ... Selecting previously unselected package libgpgme11t64:arm64. Preparing to unpack .../130-libgpgme11t64_1.24.2-1_arm64.deb ... Unpacking libgpgme11t64:arm64 (1.24.2-1) ... Selecting previously unselected package libgpgmepp6t64:arm64. Preparing to unpack .../131-libgpgmepp6t64_1.24.2-1_arm64.deb ... Unpacking libgpgmepp6t64:arm64 (1.24.2-1) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../132-libgraphite2-3_1.3.14-2+b1_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-2+b1) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../133-libharfbuzz0b_10.2.0-1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... Selecting previously unselected package libhtscodecs2:arm64. Preparing to unpack .../134-libhtscodecs2_1.6.1-2_arm64.deb ... Unpacking libhtscodecs2:arm64 (1.6.1-2) ... Selecting previously unselected package libhts3t64:arm64. Preparing to unpack .../135-libhts3t64_1.21+ds-1_arm64.deb ... Unpacking libhts3t64:arm64 (1.21+ds-1) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../136-libice6_2%3a1.1.1-1_arm64.deb ... Unpacking libice6:arm64 (2:1.1.1-1) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../137-libimagequant0_2.18.0-1+b2_arm64.deb ... Unpacking libimagequant0:arm64 (2.18.0-1+b2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../138-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../139-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../140-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../141-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package liblbfgsb0:arm64. Preparing to unpack .../142-liblbfgsb0_3.0+dfsg.4-1+b2_arm64.deb ... Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../143-liblcms2-2_2.16-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.16-2) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../144-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../145-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../146-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../147-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libnspr4:arm64. Preparing to unpack .../148-libnspr4_2%3a4.36-1_arm64.deb ... Unpacking libnspr4:arm64 (2:4.36-1) ... Selecting previously unselected package libnss3:arm64. Preparing to unpack .../149-libnss3_2%3a3.108-1_arm64.deb ... Unpacking libnss3:arm64 (2:3.108-1) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../150-libopenjp2-7_2.5.3-1_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.3-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../151-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libthai0:arm64. Preparing to unpack .../152-libthai0_0.1.29-2+b1_arm64.deb ... Unpacking libthai0:arm64 (0.1.29-2+b1) ... Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../153-libpango-1.0-0_1.56.1-1_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.56.1-1) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../154-libpangoft2-1.0-0_1.56.1-1_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.56.1-1) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../155-libpangocairo-1.0-0_1.56.1-1_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.56.1-1) ... Selecting previously unselected package libpaper2:arm64. Preparing to unpack .../156-libpaper2_2.2.5-0.3+b1_arm64.deb ... Unpacking libpaper2:arm64 (2.2.5-0.3+b1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../157-libpaper-utils_2.2.5-0.3+b1_arm64.deb ... Unpacking libpaper-utils (2.2.5-0.3+b1) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../158-libsharpyuv0_1.5.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../159-libwebp7_1.5.0-0.1_arm64.deb ... Unpacking libwebp7:arm64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../160-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libpoppler145:arm64. Preparing to unpack .../161-libpoppler145_25.01.0-4_arm64.deb ... Unpacking libpoppler145:arm64 (25.01.0-4) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../162-libpython3.12-stdlib_3.12.9-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.9-1) ... Selecting previously unselected package libqhull-r8.0:arm64. Preparing to unpack .../163-libqhull-r8.0_2020.2-6+b2_arm64.deb ... Unpacking libqhull-r8.0:arm64 (2020.2-6+b2) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../164-libraqm0_0.10.2-1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.2-1) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../165-libsm6_2%3a1.2.4-1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.4-1) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../166-libwebpdemux2_1.5.0-0.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../167-libwebpmux3_1.5.0-0.1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... Selecting previously unselected package libxslt1.1:arm64. Preparing to unpack .../168-libxslt1.1_1.1.35-1.1+b1_arm64.deb ... Unpacking libxslt1.1:arm64 (1.1.35-1.1+b1) ... Selecting previously unselected package libxt6t64:arm64. Preparing to unpack .../169-libxt6t64_1%3a1.2.1-1.2+b2_arm64.deb ... Unpacking libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../170-libyaml-0-2_0.2.5-2_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-2) ... Selecting previously unselected package poppler-utils. Preparing to unpack .../171-poppler-utils_25.01.0-4_arm64.deb ... Unpacking poppler-utils (25.01.0-4) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../172-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-pyproject-hooks. Preparing to unpack .../173-python3-pyproject-hooks_1.2.0-1_all.deb ... Unpacking python3-pyproject-hooks (1.2.0-1) ... Selecting previously unselected package python3-toml. Preparing to unpack .../174-python3-toml_0.10.2-1_all.deb ... Unpacking python3-toml (0.10.2-1) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../175-python3-wheel_0.45.1-1_all.deb ... Unpacking python3-wheel (0.45.1-1) ... Selecting previously unselected package python3-build. Preparing to unpack .../176-python3-build_1.2.2-1_all.deb ... Unpacking python3-build (1.2.2-1) ... Selecting previously unselected package python3-installer. Preparing to unpack .../177-python3-installer_0.7.0+dfsg1-3_all.deb ... Unpacking python3-installer (0.7.0+dfsg1-3) ... Selecting previously unselected package pybuild-plugin-pyproject. Preparing to unpack .../178-pybuild-plugin-pyproject_6.20250108_all.deb ... Unpacking pybuild-plugin-pyproject (6.20250108) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../179-python-matplotlib-data_3.8.3-3_all.deb ... Unpacking python-matplotlib-data (3.8.3-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../180-python3.12_3.12.9-1_arm64.deb ... Unpacking python3.12 (3.12.9-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../181-python3-all_3.13.1-2_arm64.deb ... Unpacking python3-all (3.13.1-2) ... Selecting previously unselected package python3-attr. Preparing to unpack .../182-python3-attr_25.1.0-1_all.deb ... Unpacking python3-attr (25.1.0-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../183-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3.12-tk. Preparing to unpack .../184-python3.12-tk_3.12.9-1_arm64.deb ... Unpacking python3.12-tk (3.12.9-1) ... Selecting previously unselected package python3.13-tk. Preparing to unpack .../185-python3.13-tk_3.13.2-1_arm64.deb ... Unpacking python3.13-tk (3.13.2-1) ... Selecting previously unselected package python3-tk:arm64. Preparing to unpack .../186-python3-tk_3.13.1-1_arm64.deb ... Unpacking python3-tk:arm64 (3.13.1-1) ... Selecting previously unselected package python3-pil.imagetk:arm64. Preparing to unpack .../187-python3-pil.imagetk_11.1.0-5_arm64.deb ... Unpacking python3-pil.imagetk:arm64 (11.1.0-5) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../188-python3-pil_11.1.0-5_arm64.deb ... Unpacking python3-pil:arm64 (11.1.0-5) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../189-python3-cairo_1.26.1-2+b1_arm64.deb ... Unpacking python3-cairo (1.26.1-2+b1) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../190-python3-freetype_2.5.1-1_all.deb ... Unpacking python3-freetype (2.5.1-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../191-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../192-python3-reportlab_4.3.1-1_all.deb ... Unpacking python3-reportlab (4.3.1-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../193-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../194-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../195-python3-biopython_1.85+dfsg-2_arm64.deb ... Unpacking python3-biopython (1.85+dfsg-2) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../196-python3-brotli_1.1.0-2+b6_arm64.deb ... Unpacking python3-brotli (1.1.0-2+b6) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../197-python3-contourpy_1.3.1-1_arm64.deb ... Unpacking python3-contourpy (1.3.1-1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../198-python3-cycler_0.12.1-1_all.deb ... Unpacking python3-cycler (0.12.1-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../199-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../200-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../201-python3-pytz_2025.1-3_all.deb ... Unpacking python3-pytz (2025.1-3) ... Selecting previously unselected package python3-tz. Preparing to unpack .../202-python3-tz_2025.1-3_all.deb ... Unpacking python3-tz (2025.1-3) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../203-python3-platformdirs_4.3.6-1_all.deb ... Unpacking python3-platformdirs (4.3.6-1) ... Selecting previously unselected package python3-fs. Preparing to unpack .../204-python3-fs_2.4.16-6_all.deb ... Unpacking python3-fs (2.4.16-6) ... Selecting previously unselected package python3-lxml:arm64. Preparing to unpack .../205-python3-lxml_5.3.1-1_arm64.deb ... Unpacking python3-lxml:arm64 (5.3.1-1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../206-python3-lz4_4.4.0+dfsg-1_arm64.deb ... Unpacking python3-lz4 (4.4.0+dfsg-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../207-python3-scipy_1.14.1-4_arm64.deb ... Unpacking python3-scipy (1.14.1-4) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../208-python3-mpmath_1.3.0-1_all.deb ... Unpacking python3-mpmath (1.3.0-1) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../209-python3-sympy_1.13.3-1_all.deb ... Unpacking python3-sympy (1.13.3-1) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../210-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... Selecting previously unselected package unicode-data. Preparing to unpack .../211-unicode-data_15.1.0-1_all.deb ... Unpacking unicode-data (15.1.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../212-python3-fonttools_4.55.3-2_arm64.deb ... Unpacking python3-fonttools (4.55.3-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../213-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../214-python3-joblib_1.4.2-3_all.deb ... Unpacking python3-joblib (1.4.2-3) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../215-python3-kiwisolver_1.4.7-3_arm64.deb ... Unpacking python3-kiwisolver (1.4.7-3) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../216-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../217-python3-matplotlib_3.8.3-3+b2_arm64.deb ... Unpacking python3-matplotlib (3.8.3-3+b2) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../218-python3-networkx_3.2.1-5_all.deb ... Unpacking python3-networkx (3.2.1-5) ... Selecting previously unselected package python3-pandas-lib:arm64. Preparing to unpack .../219-python3-pandas-lib_2.2.3+dfsg-8_arm64.deb ... Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-8) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../220-python3-pandas_2.2.3+dfsg-8_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-8) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../221-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../222-python3-yaml_6.0.2-1+b1_arm64.deb ... Unpacking python3-yaml (6.0.2-1+b1) ... Selecting previously unselected package python3-pomegranate. Preparing to unpack .../223-python3-pomegranate_0.15.0-1_arm64.deb ... Unpacking python3-pomegranate (0.15.0-1) ... Selecting previously unselected package python3-pyfaidx. Preparing to unpack .../224-python3-pyfaidx_0.8.1.3-1_all.deb ... Unpacking python3-pyfaidx (0.8.1.3-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../225-python3-pysam_0.23.0+ds-1_arm64.deb ... Unpacking python3-pysam (0.23.0+ds-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../226-python3-pytest_8.3.4-1_all.deb ... Unpacking python3-pytest (8.3.4-1) ... Selecting previously unselected package zip. Preparing to unpack .../227-zip_3.0-14+b1_arm64.deb ... Unpacking zip (3.0-14+b1) ... Selecting previously unselected package unzip. Preparing to unpack .../228-unzip_6.0-28+b1_arm64.deb ... Unpacking unzip (6.0-28+b1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../229-xdg-utils_1.2.1-2_all.deb ... Unpacking xdg-utils (1.2.1-2) ... Selecting previously unselected package r-base-core. Preparing to unpack .../230-r-base-core_4.4.2-1_arm64.deb ... Unpacking r-base-core (4.4.2-1) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../231-r-bioc-biocgenerics_0.52.0-2_all.deb ... Unpacking r-bioc-biocgenerics (0.52.0-2) ... Selecting previously unselected package r-bioc-dnacopy. Preparing to unpack .../232-r-bioc-dnacopy_1.80.0-2_arm64.deb ... Unpacking r-bioc-dnacopy (1.80.0-2) ... Setting up libhtscodecs2:arm64 (1.6.1-2) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-2+b1) ... Setting up liblcms2-2:arm64 (2.16-2) ... Setting up libpixman-1-0:arm64 (0.44.0-3) ... Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ... Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libnpth0t64:arm64 (1.8-2) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libgpg-error0:arm64 (1.51-3) ... Setting up libdatrie1:arm64 (0.2.13-3+b1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.3-1) ... Setting up unzip (6.0-28+b1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:arm64 (3.12.9-1) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Feb 25 08:22:53 UTC 2025. Universal Time is now: Tue Feb 25 08:22:53 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up zip (3.0-14+b1) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libnspr4:arm64 (2:4.36-1) ... Setting up gnupg-l10n (2.2.46-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up libproc2-0:arm64 (2:4.0.4-7) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.46-4) ... Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-2) ... Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libassuan9:arm64 (3.0.1-2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libopenjp2-7:arm64 (2.5.3-1) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.9.1-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libpaper2:arm64 (2.2.5-0.3+b1) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.4.1-1) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libksba8:arm64 (1.6.7-2+b1) ... Setting up pinentry-curses (1.3.1-2) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up liblapack3:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-3) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up libnss3:arm64 (2:3.108-1) ... Setting up libpaper-utils (2.2.5-0.3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.83.3-2) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up ucf (3.0050) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up gpgconf (2.2.46-1+b1) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libpython3.13-stdlib:arm64 (3.13.2-1) ... Setting up gpg (2.2.46-1+b1) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up gpg-agent (2.2.46-1+b1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.16-1) ... Setting up gpgsm (2.2.46-1+b1) ... Setting up libpango-1.0-0:arm64 (1.56.1-1) ... Setting up python3.12-tk (3.12.9-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-wheel (0.45.1-1) ... Setting up libcairo2:arm64 (1.18.2-2) ... Setting up python3.13-tk (3.13.2-1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up dirmngr (2.2.46-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up libraqm0:arm64 (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Setting up python3-kiwisolver (1.4.7-3) ... Setting up cython3 (3.0.11+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.3.1-1) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up gnupg (2.2.46-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-contourpy (1.3.1-1) ... Setting up libgpgme11t64:arm64 (1.24.2-1) ... Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.2-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (25.1.0-1) ... Setting up libgpgmepp6t64:arm64 (1.24.2-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Setting up python3-scipy (1.14.1-4) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-importlib-metadata (8.6.1-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:arm64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:arm64 (8.12.1-2) ... Setting up python3-joblib (1.4.2-3) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-8) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:arm64 (8.12.1-2) ... Setting up python3-all (3.13.1-2) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-tk:arm64 (3.13.1-1) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-tz (2025.1-3) ... Setting up python3-fs (2.4.16-6) ... Setting up python3-pil:arm64 (11.1.0-5) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-pil.imagetk:arm64 (11.1.0-5) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up python3-reportlab (4.3.1-1) ... Setting up libhts3t64:arm64 (1.21+ds-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up libpoppler145:arm64 (25.01.0-4) ... Setting up python3-pyfaidx (0.8.1.3-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up python3-pysam (0.23.0+ds-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-networkx (3.2.1-5) ... Setting up r-bioc-dnacopy (1.80.0-2) ... Setting up poppler-utils (25.01.0-4) ... Setting up dh-python (6.20250108) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Setting up python3-pomegranate (0.15.0-1) ... Setting up python3-fonttools (4.55.3-2) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b2) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-2) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cnvkit-0.9.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cnvkit_0.9.12-1_source.changes dpkg-buildpackage: info: source package cnvkit dpkg-buildpackage: info: source version 0.9.12-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/cnvkit-0.9.12' cd test && /usr/bin/make clean || /bin/true make[2]: Entering directory '/build/reproducible-path/cnvkit-0.9.12/test' # Picard rm -rf build/p*targetcoverage.cnn build/reference-picard.cnn build/p2-5_5.cnr build/p2-9_2.cnr build/p2-20_1.cnr build/p2-20_2.cnr build/p2-20_3.cnr build/p2-20_4.cnr build/p2-20_5.cnr build/p2-5_5.cns build/p2-9_2.cns build/p2-20_1.cns build/p2-20_2.cns build/p2-20_3.cns build/p2-20_4.cns build/p2-20_5.cns all-scatters.pdf all-diagrams.pdf heatmap-picard.pdf p2-9_2-breaks.txt p2-9_2-genemetrics.txt gender-picard.txt p2-all.cdt p2-all-jtv.txt p2-all.seg p2-9_2.nexus p2-9_2.nexus-ogt p2-all.bed p2-9_2.vcf p2-9_2.theta2.input p2-9_2-segmetrics.cns p2-5_5-segmetrics.cns p*-scatter.pdf p*-diagram.pdf rm -rf build/na12878-chrM-Y-trunc* build/chrM-Y-trunc* make[2]: Leaving directory '/build/reproducible-path/cnvkit-0.9.12/test' make[1]: Leaving directory '/build/reproducible-path/cnvkit-0.9.12' dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cnvkit-0.9.12/.pybuild/cpython3_3.12_cnvkit * Building wheel... running bdist_wheel running build running build_py creating build/lib/cnvlib copying cnvlib/smoothing.py -> build/lib/cnvlib copying cnvlib/segmetrics.py -> build/lib/cnvlib copying cnvlib/reference.py -> build/lib/cnvlib copying cnvlib/importers.py -> build/lib/cnvlib copying cnvlib/descriptives.py -> build/lib/cnvlib copying cnvlib/cnary.py -> build/lib/cnvlib copying cnvlib/call.py -> build/lib/cnvlib copying cnvlib/bintest.py -> build/lib/cnvlib copying cnvlib/commands.py -> build/lib/cnvlib copying cnvlib/vary.py -> build/lib/cnvlib copying cnvlib/target.py -> build/lib/cnvlib copying cnvlib/segfilters.py -> build/lib/cnvlib copying cnvlib/scatter.py -> build/lib/cnvlib copying cnvlib/samutil.py -> build/lib/cnvlib copying cnvlib/rna.py -> build/lib/cnvlib copying cnvlib/reports.py -> build/lib/cnvlib copying cnvlib/plots.py -> build/lib/cnvlib copying cnvlib/params.py -> build/lib/cnvlib copying cnvlib/parallel.py -> build/lib/cnvlib copying cnvlib/metrics.py -> build/lib/cnvlib copying cnvlib/import_rna.py -> build/lib/cnvlib copying cnvlib/heatmap.py -> build/lib/cnvlib copying cnvlib/fix.py -> build/lib/cnvlib copying cnvlib/export.py -> build/lib/cnvlib copying cnvlib/diagram.py -> build/lib/cnvlib copying cnvlib/coverage.py -> build/lib/cnvlib copying cnvlib/core.py -> build/lib/cnvlib copying cnvlib/cnvkit.py -> build/lib/cnvlib copying cnvlib/cmdutil.py -> build/lib/cnvlib copying cnvlib/cluster.py -> build/lib/cnvlib copying cnvlib/batch.py -> build/lib/cnvlib copying cnvlib/autobin.py -> build/lib/cnvlib copying cnvlib/antitarget.py -> build/lib/cnvlib copying cnvlib/access.py -> build/lib/cnvlib copying cnvlib/_version.py -> build/lib/cnvlib copying cnvlib/__init__.py -> build/lib/cnvlib creating build/lib/cnvlib/segmentation copying cnvlib/segmentation/haar.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/none.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/hmm.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/flasso.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/cbs.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/__init__.py -> build/lib/cnvlib/segmentation creating build/lib/skgenome copying skgenome/intersect.py -> build/lib/skgenome copying skgenome/subtract.py -> build/lib/skgenome copying skgenome/subdivide.py -> build/lib/skgenome copying skgenome/rangelabel.py -> build/lib/skgenome copying skgenome/merge.py -> build/lib/skgenome copying skgenome/gary.py -> build/lib/skgenome copying skgenome/combiners.py -> build/lib/skgenome copying skgenome/chromsort.py -> build/lib/skgenome copying skgenome/__init__.py -> build/lib/skgenome creating build/lib/skgenome/tabio copying skgenome/tabio/vcfsimple.py -> build/lib/skgenome/tabio copying skgenome/tabio/vcfio.py -> build/lib/skgenome/tabio copying skgenome/tabio/util.py -> build/lib/skgenome/tabio copying skgenome/tabio/textcoord.py -> build/lib/skgenome/tabio copying skgenome/tabio/tab.py -> build/lib/skgenome/tabio copying skgenome/tabio/seqdict.py -> build/lib/skgenome/tabio copying skgenome/tabio/seg.py -> build/lib/skgenome/tabio copying skgenome/tabio/picard.py -> build/lib/skgenome/tabio copying skgenome/tabio/gff.py -> build/lib/skgenome/tabio copying skgenome/tabio/genepred.py -> build/lib/skgenome/tabio copying skgenome/tabio/bedio.py -> build/lib/skgenome/tabio copying skgenome/tabio/__init__.py -> build/lib/skgenome/tabio running egg_info creating CNVkit.egg-info writing CNVkit.egg-info/PKG-INFO writing dependency_links to CNVkit.egg-info/dependency_links.txt writing entry points to CNVkit.egg-info/entry_points.txt writing requirements to CNVkit.egg-info/requires.txt writing top-level names to CNVkit.egg-info/top_level.txt writing manifest file 'CNVkit.egg-info/SOURCES.txt' reading manifest file 'CNVkit.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'CNVkit.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/skgenome creating build/bdist.linux-aarch64/wheel/skgenome/tabio copying build/lib/skgenome/tabio/__init__.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/bedio.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/genepred.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/gff.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/picard.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/seg.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/seqdict.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/tab.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/textcoord.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/util.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/vcfio.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/vcfsimple.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/__init__.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/chromsort.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/combiners.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/gary.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/merge.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/rangelabel.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/subdivide.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/subtract.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/intersect.py -> build/bdist.linux-aarch64/wheel/./skgenome creating build/bdist.linux-aarch64/wheel/cnvlib creating build/bdist.linux-aarch64/wheel/cnvlib/segmentation copying build/lib/cnvlib/segmentation/__init__.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/cbs.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/flasso.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/hmm.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/none.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/haar.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/__init__.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/_version.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/access.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/antitarget.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/autobin.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/batch.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/cluster.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/cmdutil.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/cnvkit.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/core.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/coverage.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/diagram.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/export.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/fix.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/heatmap.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/import_rna.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/metrics.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/parallel.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/params.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/plots.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/reports.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/rna.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/samutil.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/scatter.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/segfilters.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/target.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/vary.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/commands.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/bintest.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/call.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/cnary.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/descriptives.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/importers.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/reference.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/segmetrics.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/smoothing.py -> build/bdist.linux-aarch64/wheel/./cnvlib running install_egg_info Copying CNVkit.egg-info to build/bdist.linux-aarch64/wheel/./CNVkit-0.9.12.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/CNVkit-0.9.12.dist-info/WHEEL creating '/build/reproducible-path/cnvkit-0.9.12/.pybuild/cpython3_3.12_cnvkit/.tmp-9tuwovdo/CNVkit-0.9.12-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cnvlib/__init__.py' adding 'cnvlib/_version.py' adding 'cnvlib/access.py' adding 'cnvlib/antitarget.py' adding 'cnvlib/autobin.py' adding 'cnvlib/batch.py' adding 'cnvlib/bintest.py' adding 'cnvlib/call.py' adding 'cnvlib/cluster.py' adding 'cnvlib/cmdutil.py' adding 'cnvlib/cnary.py' adding 'cnvlib/cnvkit.py' adding 'cnvlib/commands.py' adding 'cnvlib/core.py' adding 'cnvlib/coverage.py' adding 'cnvlib/descriptives.py' adding 'cnvlib/diagram.py' adding 'cnvlib/export.py' adding 'cnvlib/fix.py' adding 'cnvlib/heatmap.py' adding 'cnvlib/import_rna.py' adding 'cnvlib/importers.py' adding 'cnvlib/metrics.py' adding 'cnvlib/parallel.py' adding 'cnvlib/params.py' adding 'cnvlib/plots.py' adding 'cnvlib/reference.py' adding 'cnvlib/reports.py' adding 'cnvlib/rna.py' adding 'cnvlib/samutil.py' adding 'cnvlib/scatter.py' adding 'cnvlib/segfilters.py' adding 'cnvlib/segmetrics.py' adding 'cnvlib/smoothing.py' adding 'cnvlib/target.py' adding 'cnvlib/vary.py' adding 'cnvlib/segmentation/__init__.py' adding 'cnvlib/segmentation/cbs.py' adding 'cnvlib/segmentation/flasso.py' adding 'cnvlib/segmentation/haar.py' adding 'cnvlib/segmentation/hmm.py' adding 'cnvlib/segmentation/none.py' adding 'skgenome/__init__.py' adding 'skgenome/chromsort.py' adding 'skgenome/combiners.py' adding 'skgenome/gary.py' adding 'skgenome/intersect.py' adding 'skgenome/merge.py' adding 'skgenome/rangelabel.py' adding 'skgenome/subdivide.py' adding 'skgenome/subtract.py' adding 'skgenome/tabio/__init__.py' adding 'skgenome/tabio/bedio.py' adding 'skgenome/tabio/genepred.py' adding 'skgenome/tabio/gff.py' adding 'skgenome/tabio/picard.py' adding 'skgenome/tabio/seg.py' adding 'skgenome/tabio/seqdict.py' adding 'skgenome/tabio/tab.py' adding 'skgenome/tabio/textcoord.py' adding 'skgenome/tabio/util.py' adding 'skgenome/tabio/vcfio.py' adding 'skgenome/tabio/vcfsimple.py' adding 'CNVkit-0.9.12.dist-info/LICENSE' adding 'CNVkit-0.9.12.dist-info/METADATA' adding 'CNVkit-0.9.12.dist-info/WHEEL' adding 'CNVkit-0.9.12.dist-info/entry_points.txt' adding 'CNVkit-0.9.12.dist-info/top_level.txt' adding 'CNVkit-0.9.12.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built CNVkit-0.9.12-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cnvkit-0.9.12/.pybuild/cpython3_3.13_cnvkit * Building wheel... running bdist_wheel running build running build_py running egg_info writing CNVkit.egg-info/PKG-INFO writing dependency_links to CNVkit.egg-info/dependency_links.txt writing entry points to CNVkit.egg-info/entry_points.txt writing requirements to CNVkit.egg-info/requires.txt writing top-level names to CNVkit.egg-info/top_level.txt reading manifest file 'CNVkit.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'CNVkit.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/skgenome creating build/bdist.linux-aarch64/wheel/skgenome/tabio copying build/lib/skgenome/tabio/__init__.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/bedio.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/genepred.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/gff.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/picard.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/seg.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/seqdict.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/tab.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/textcoord.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/util.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/vcfio.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/tabio/vcfsimple.py -> build/bdist.linux-aarch64/wheel/./skgenome/tabio copying build/lib/skgenome/__init__.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/chromsort.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/combiners.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/gary.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/merge.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/rangelabel.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/subdivide.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/subtract.py -> build/bdist.linux-aarch64/wheel/./skgenome copying build/lib/skgenome/intersect.py -> build/bdist.linux-aarch64/wheel/./skgenome creating build/bdist.linux-aarch64/wheel/cnvlib creating build/bdist.linux-aarch64/wheel/cnvlib/segmentation copying build/lib/cnvlib/segmentation/__init__.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/cbs.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/flasso.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/hmm.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/none.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/segmentation/haar.py -> build/bdist.linux-aarch64/wheel/./cnvlib/segmentation copying build/lib/cnvlib/__init__.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/_version.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/access.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/antitarget.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/autobin.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/batch.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/cluster.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/cmdutil.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/cnvkit.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/core.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/coverage.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/diagram.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/export.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/fix.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/heatmap.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/import_rna.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/metrics.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/parallel.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/params.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/plots.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/reports.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/rna.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/samutil.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/scatter.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/segfilters.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/target.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/vary.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/commands.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/bintest.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/call.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/cnary.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/descriptives.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/importers.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/reference.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/segmetrics.py -> build/bdist.linux-aarch64/wheel/./cnvlib copying build/lib/cnvlib/smoothing.py -> build/bdist.linux-aarch64/wheel/./cnvlib running install_egg_info Copying CNVkit.egg-info to build/bdist.linux-aarch64/wheel/./CNVkit-0.9.12.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/CNVkit-0.9.12.dist-info/WHEEL creating '/build/reproducible-path/cnvkit-0.9.12/.pybuild/cpython3_3.13_cnvkit/.tmp-g21ydmdn/CNVkit-0.9.12-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cnvlib/__init__.py' adding 'cnvlib/_version.py' adding 'cnvlib/access.py' adding 'cnvlib/antitarget.py' adding 'cnvlib/autobin.py' adding 'cnvlib/batch.py' adding 'cnvlib/bintest.py' adding 'cnvlib/call.py' adding 'cnvlib/cluster.py' adding 'cnvlib/cmdutil.py' adding 'cnvlib/cnary.py' adding 'cnvlib/cnvkit.py' adding 'cnvlib/commands.py' adding 'cnvlib/core.py' adding 'cnvlib/coverage.py' adding 'cnvlib/descriptives.py' adding 'cnvlib/diagram.py' adding 'cnvlib/export.py' adding 'cnvlib/fix.py' adding 'cnvlib/heatmap.py' adding 'cnvlib/import_rna.py' adding 'cnvlib/importers.py' adding 'cnvlib/metrics.py' adding 'cnvlib/parallel.py' adding 'cnvlib/params.py' adding 'cnvlib/plots.py' adding 'cnvlib/reference.py' adding 'cnvlib/reports.py' adding 'cnvlib/rna.py' adding 'cnvlib/samutil.py' adding 'cnvlib/scatter.py' adding 'cnvlib/segfilters.py' adding 'cnvlib/segmetrics.py' adding 'cnvlib/smoothing.py' adding 'cnvlib/target.py' adding 'cnvlib/vary.py' adding 'cnvlib/segmentation/__init__.py' adding 'cnvlib/segmentation/cbs.py' adding 'cnvlib/segmentation/flasso.py' adding 'cnvlib/segmentation/haar.py' adding 'cnvlib/segmentation/hmm.py' adding 'cnvlib/segmentation/none.py' adding 'skgenome/__init__.py' adding 'skgenome/chromsort.py' adding 'skgenome/combiners.py' adding 'skgenome/gary.py' adding 'skgenome/intersect.py' adding 'skgenome/merge.py' adding 'skgenome/rangelabel.py' adding 'skgenome/subdivide.py' adding 'skgenome/subtract.py' adding 'skgenome/tabio/__init__.py' adding 'skgenome/tabio/bedio.py' adding 'skgenome/tabio/genepred.py' adding 'skgenome/tabio/gff.py' adding 'skgenome/tabio/picard.py' adding 'skgenome/tabio/seg.py' adding 'skgenome/tabio/seqdict.py' adding 'skgenome/tabio/tab.py' adding 'skgenome/tabio/textcoord.py' adding 'skgenome/tabio/util.py' adding 'skgenome/tabio/vcfio.py' adding 'skgenome/tabio/vcfsimple.py' adding 'CNVkit-0.9.12.dist-info/LICENSE' adding 'CNVkit-0.9.12.dist-info/METADATA' adding 'CNVkit-0.9.12.dist-info/WHEEL' adding 'CNVkit-0.9.12.dist-info/entry_points.txt' adding 'CNVkit-0.9.12.dist-info/top_level.txt' adding 'CNVkit-0.9.12.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built CNVkit-0.9.12-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/cnvkit-0.9.12/.pybuild/cpython3_3.12_cnvkit/build; python3.12 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cnvkit-0.9.12/.pybuild/cpython3_3.12_cnvkit/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 70 items test/test_cnvlib.py ........... [ 15%] test/test_commands.py ............................. [ 57%] test/test_genome.py ................... [ 84%] test/test_io.py .......... [ 98%] test/test_r.py . [100%] ======================== 70 passed in 365.96s (0:06:05) ======================== I: pybuild base:311: cd /build/reproducible-path/cnvkit-0.9.12/.pybuild/cpython3_3.13_cnvkit/build; python3.13 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cnvkit-0.9.12/.pybuild/cpython3_3.13_cnvkit/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 70 items test/test_cnvlib.py ........... [ 15%] test/test_commands.py ............................. [ 57%] test/test_genome.py ................... [ 84%] test/test_io.py .......... [ 98%] test/test_r.py . [100%] ======================== 70 passed in 258.57s (0:04:18) ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/cnvkit/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:113: replacing shebang in debian/cnvkit/usr/bin/genome_instability_index.py dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'cnvkit' in '../cnvkit_0.9.12-1_all.deb'. dpkg-genbuildinfo --build=binary -O../cnvkit_0.9.12-1_arm64.buildinfo dpkg-genchanges --build=binary -O../cnvkit_0.9.12-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3978017 and its subdirectories I: Current time: Mon Feb 24 20:39:15 -12 2025 I: pbuilder-time-stamp: 1740472755 Tue Feb 25 08:39:27 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Feb 25 08:39:27 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Feb 25 08:48:32 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Feb 25 08:48:33 UTC 2025 I: cnvkit_0.9.12-1_arm64.changes: Format: 1.8 Date: Thu, 06 Feb 2025 15:23:25 +0100 Source: cnvkit Binary: cnvkit Architecture: all Version: 0.9.12-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: cnvkit - Copy number variant detection from targeted DNA sequencing Changes: cnvkit (0.9.12-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * Removed spelling patch, it was applied upstream. Remaining patches were refreshed. * d/control: build-dep on the new python3-pomegranate that supports numpy 2.x. * Include patch from upstream for numpy 2.x support. * d/{install,rules,pybuild.testfiles}: simplify and modernize * Add my own patch to fix one last numpy 2.x issue: Use `np.bytes_` instead of `np.string_`. * d/patches/controldir: fix link to the Debian bug. Checksums-Sha1: 5a52b59479fda14739ab9390fa49e11835eecec4 19867212 cnvkit_0.9.12-1_all.deb 07b83421b4a7e06daa1e80f471831c0e7ce2d1d6 11344 cnvkit_0.9.12-1_arm64.buildinfo Checksums-Sha256: 71d5f67da1b7944cf40c0842de2d4f08c861e08a064ceea930c5e19f5b2a6951 19867212 cnvkit_0.9.12-1_all.deb 068478d92d7e196502c6be87bb1f1f36c533eb618db3bd228b4869f01dd0c7a0 11344 cnvkit_0.9.12-1_arm64.buildinfo Files: 66e9939081a77c21fbf4d39daf294eee 19867212 science optional cnvkit_0.9.12-1_all.deb f1cb465bda836f62f6274924a2606680 11344 science optional cnvkit_0.9.12-1_arm64.buildinfo Tue Feb 25 08:48:34 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-61519.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Gfz4YOv0/cnvkit_0.9.12-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Gfz4YOv0/cnvkit_0.9.12-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Gfz4YOv0/cnvkit_0.9.12-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Gfz4YOv0/b1/cnvkit_0.9.12-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Gfz4YOv0/b2/cnvkit_0.9.12-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 230ms CPU time consumed: 231ms Tue Feb 25 08:48:35 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Tue Feb 25 08:48:35 UTC 2025 I: cnvkit from trixie built successfully and reproducibly on arm64. Tue Feb 25 08:48:36 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Feb 25 08:48:36 UTC 2025 I: Submitting 12K b1/cnvkit_0.9.12-1_arm64.buildinfo.asc Tue Feb 25 08:48:37 UTC 2025 I: Submitting 12K b2/cnvkit_0.9.12-1_arm64.buildinfo.asc Tue Feb 25 08:48:38 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Feb 25 08:48:38 UTC 2025 I: Done submitting .buildinfo files. Tue Feb 25 08:48:38 UTC 2025 I: Removing signed cnvkit_0.9.12-1_arm64.buildinfo.asc files: removed './b1/cnvkit_0.9.12-1_arm64.buildinfo.asc' removed './b2/cnvkit_0.9.12-1_arm64.buildinfo.asc'