Thu Jan 16 20:52:29 UTC 2025 I: starting to build debian-med/trixie/arm64 on jenkins on '2025-01-16 20:52' Thu Jan 16 20:52:29 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/70889/console.log Thu Jan 16 20:52:29 UTC 2025 I: Downloading source for trixie/debian-med=3.8.2 --2025-01-16 20:52:29-- http://deb.debian.org/debian/pool/main/d/debian-med/debian-med_3.8.2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2937 (2.9K) [text/prs.lines.tag] Saving to: ‘debian-med_3.8.2.dsc’ 0K .. 100% 392M=0s 2025-01-16 20:52:29 (392 MB/s) - ‘debian-med_3.8.2.dsc’ saved [2937/2937] Thu Jan 16 20:52:29 UTC 2025 I: debian-med_3.8.2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (native) Source: debian-med Binary: med-tasks, med-config, med-all, med-bio, med-bio-dev, med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-statistics, med-tools, med-typesetting Architecture: all Version: 3.8.2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/blends-team/med Vcs-Git: https://salsa.debian.org/blends-team/med.git Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: blends-dev (>= 0.7.5~) Package-List: med-all deb metapackages optional arch=all med-bio deb metapackages optional arch=all med-bio-dev deb metapackages optional arch=all med-cloud deb metapackages optional arch=all med-config deb misc optional arch=all med-data deb metapackages optional arch=all med-dental deb metapackages optional arch=all med-epi deb metapackages optional arch=all med-his deb metapackages optional arch=all med-imaging deb metapackages optional arch=all med-imaging-dev deb metapackages optional arch=all med-laboratory deb metapackages optional arch=all med-oncology deb metapackages optional arch=all med-pharmacy deb metapackages optional arch=all med-physics deb metapackages optional arch=all med-practice deb metapackages optional arch=all med-psychology deb metapackages optional arch=all med-research deb metapackages optional arch=all med-statistics deb metapackages optional arch=all med-tasks deb misc optional arch=all med-tools deb metapackages optional arch=all med-typesetting deb metapackages optional arch=all Checksums-Sha1: 37d9822e0e17a7c31e9947c0c3de37a8592d0585 127120 debian-med_3.8.2.tar.xz Checksums-Sha256: 38953482ec5769bd8639b5aeb666e5b7df857982b79f35d08d3b15c90f5285dc 127120 debian-med_3.8.2.tar.xz Files: 4d483b90b266b41b9951716e8de702d1 127120 debian-med_3.8.2.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdYgTURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFq+Q/+PsbTHzOZXuoRGxhWk9SE+XpQUlgqK/Ys vXeKdMZvdXSxTqP0A9rPBhqcwu6RszyF4H9HcG9OIm72+wnQ/AdGleaVKoAnvZDA 4dqaMRRYBI68pEUzxWNTqSGxG/d/W+wm271QukgcuVNnPgyzskM27NAk+fTvXuV5 QpuX2CNC1W7UhRBx3IGJ/JncQ+MZCr4bxZJv+i0Zy9r1SGVMBGtY9J1mepY+i7qw kCZuvoimS22LPEHbrgiD0saji9mRbPXnOHM0FQ/LND5eUGLaOLeIoY1GD6eNolaN OUhfoIO7F3zsl4T29VIjlxOAyeYHRFefGWiyEWO0OYxo9Rk4b6ZfcBXbiNOyPrWA OCOX5+TA57PX8sBelkpURThLtQfmD5Vcp8w3G6LmKg1cU52qjPGJW4yXsv6Qgc8F obhqRSUVytnDLMfgyPltGAAI6KR8BvWBcCS8WqUhvEUu1EQMDJ6RHiYa4r84TXAS 9HeGK+6iy7I5ExqsbLwdkVCdFj9Ss0iDh1q2JqjloubVwoVx08N8AQr3Wfncvhq6 3LqQhmuL2RyuAKEAHEHrV6ioQmyb3ZU9+9uRzVWNyHWtenPJFG5O2NWP1d5mCfu2 cDjxkbNswka5g9wsuwbaPESU3e0ieD3SZv3waP3Ga/i+5QzLTiMmLNzW7Hv6x8nr Q/MsjPN+VGc= =4EYI -----END PGP SIGNATURE----- Thu Jan 16 20:52:29 UTC 2025 I: Checking whether the package is not for us Thu Jan 16 20:52:29 UTC 2025 I: Starting 1st build on remote node codethink01-arm64.debian.net. Thu Jan 16 20:52:29 UTC 2025 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Thu Jan 16 20:53:30 UTC 2025 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Feb 18 15:15:31 -12 2026 I: pbuilder-time-stamp: 1771470931 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [debian-med_3.8.2.dsc] I: copying [./debian-med_3.8.2.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./debian-med_3.8.2.dsc: unsupported subcommand dpkg-source: info: extracting debian-med in debian-med-3.8.2 dpkg-source: info: unpacking debian-med_3.8.2.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/438354/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f67759dd4d754b8f81c806f9e5f6b53e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='438354' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z0Un28GZ/pbuilderrc_waQC --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z0Un28GZ/b1 --logfile b1/build.log debian-med_3.8.2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/438354/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), blends-dev (>= 0.7.5~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19967 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on blends-dev (>= 0.7.5~); however: Package blends-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blends-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} distro-info-data{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python-apt-common{a} python3{a} python3-apt{a} python3-blends{a} python3-chardet{a} python3-debian{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl iso-codes javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lsb-release lynx python3-psycopg2 wget zstd 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 27.6 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-3 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-3 [1941 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-3 [1906 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-3 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-13 [91.4 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python-apt-common all 2.9.6 [67.9 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 distro-info-data all 0.63 [6408 B] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-apt arm64 2.9.6+b1 [177 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-debian all 0.1.49 [115 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-blends all 0.7.10 [32.4 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 blends-dev all 0.7.10 [26.0 kB] Fetched 27.6 MB in 0s (76.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19967 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_arm64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:arm64 (3.12.8-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20287 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_arm64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../04-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../06-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../15-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-3_arm64.deb ... Unpacking python3.12 (3.12.8-3) ... 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Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Feb 19 03:15:58 UTC 2026. Universal Time is now: Thu Feb 19 03:15:58 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up python-apt-common (2.9.6) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.23) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-debian (0.1.49) ... Setting up python3-apt (2.9.6+b1) ... Setting up python3-blends (0.7.10) ... Setting up blends-dev (0.7.10) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/debian-med-3.8.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../debian-med_3.8.2_source.changes dpkg-buildpackage: info: source package debian-med dpkg-buildpackage: info: source version 3.8.2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/debian-med-3.8.2' # call make clean instead of distclean make clean make[2]: Entering directory '/build/reproducible-path/debian-med-3.8.2' rm -rf tmp rm -f tasks/*~ rm -rf tasksel rm -f packages.txt by_vote packages-sorted.txt rm -f debian/*-config.postinst debian/*-config.preinst debian/*-config.postrm debian/*-config.prerm make[2]: Leaving directory '/build/reproducible-path/debian-med-3.8.2' make[1]: Leaving directory '/build/reproducible-path/debian-med-3.8.2' debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/debian-med-3.8.2' # hmmm, that would kill debian/control - so don't do this! # /usr/bin/make -f /usr/share/blends-dev/Makefile clean # Clear apt-get cache rm -rf tmp # Remove backup files from source tarball rm -f tasks/*~ # Remove auto generated post{inst,rm} scripts; but only if an according *.stub file exists for task in `ls tasks | grep -v '^[a-z]*:$*' | grep -v '^$'` ; do \ rm -f debian/med-${task}.postinst debian/med-${task}.prerm ; \ done # rm -f debian/med-*.postinst debian/med-*.prerm debian/med-*.postrm debian/med-*.preinst # remove auto generated files for config package rm -f debian/med-config.templates debian/med-config.config \ debian/med-config.install debian/med-config.links \ debian/90med-config # remove auto generated debconf template translations rm -rf debian/po # remove possibly remaining debhelper files rm -f debian/med-*.debhelper.log dh_clean make[1]: Leaving directory '/build/reproducible-path/debian-med-3.8.2' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/debian-med-3.8.2' # do nothing, we just called the make install target in advance # and want to build the packages without network access make[1]: Leaving directory '/build/reproducible-path/debian-med-3.8.2' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/debian-med-3.8.2' /usr/share/blends-dev/blend-install-helper dh_install debian-med-tasks.desc usr/share/tasksel/descs make[1]: Leaving directory '/build/reproducible-path/debian-med-3.8.2' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/debian-med-3.8.2' dh_installdocs -A README make[1]: Leaving directory '/build/reproducible-path/debian-med-3.8.2' dh_installchangelogs dh_installman dh_installdebconf dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'med-laboratory' in '../med-laboratory_3.8.2_all.deb'. dpkg-deb: building package 'med-tasks' in '../med-tasks_3.8.2_all.deb'. dpkg-deb: building package 'med-all' in '../med-all_3.8.2_all.deb'. dpkg-deb: building package 'med-pharmacy' in '../med-pharmacy_3.8.2_all.deb'. dpkg-deb: building package 'med-epi' in '../med-epi_3.8.2_all.deb'. dpkg-deb: building package 'med-tools' in '../med-tools_3.8.2_all.deb'. dpkg-deb: building package 'med-data' in '../med-data_3.8.2_all.deb'. dpkg-deb: building package 'med-research' in '../med-research_3.8.2_all.deb'. dpkg-deb: building package 'med-practice' in '../med-practice_3.8.2_all.deb'. dpkg-deb: building package 'med-bio-dev' in '../med-bio-dev_3.8.2_all.deb'. dpkg-deb: building package 'med-imaging' in '../med-imaging_3.8.2_all.deb'. dpkg-deb: building package 'med-config' in '../med-config_3.8.2_all.deb'. dpkg-deb: building package 'med-oncology' in '../med-oncology_3.8.2_all.deb'. dpkg-deb: building package 'med-bio' in '../med-bio_3.8.2_all.deb'. dpkg-deb: building package 'med-his' in '../med-his_3.8.2_all.deb'. dpkg-deb: building package 'med-dental' in '../med-dental_3.8.2_all.deb'. dpkg-deb: building package 'med-physics' in '../med-physics_3.8.2_all.deb'. dpkg-deb: building package 'med-statistics' in '../med-statistics_3.8.2_all.deb'. dpkg-deb: building package 'med-typesetting' in '../med-typesetting_3.8.2_all.deb'. dpkg-deb: building package 'med-psychology' in '../med-psychology_3.8.2_all.deb'. dpkg-deb: building package 'med-imaging-dev' in '../med-imaging-dev_3.8.2_all.deb'. dpkg-deb: building package 'med-cloud' in '../med-cloud_3.8.2_all.deb'. dpkg-genbuildinfo --build=binary -O../debian-med_3.8.2_arm64.buildinfo dpkg-genchanges --build=binary -O../debian-med_3.8.2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/438354 and its subdirectories I: Current time: Wed Feb 18 15:16:28 -12 2026 I: pbuilder-time-stamp: 1771470988 Thu Jan 16 20:53:31 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Jan 16 20:53:31 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Jan 16 20:54:13 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Jan 16 20:54:14 UTC 2025 I: debian-med_3.8.2_arm64.changes: Format: 1.8 Date: Tue, 10 Dec 2024 18:53:30 +0100 Source: debian-med Binary: med-all med-bio med-bio-dev med-cloud med-config med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-research med-statistics med-tasks med-tools med-typesetting Architecture: all Version: 3.8.2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: med-all - Default selection of tasks for Debian Med med-bio - Debian Med bioinformatics packages med-bio-dev - Debian Med packages for development of bioinformatics application med-cloud - Debian Med bioinformatics applications usable in cloud computing med-config - Debian Med general config package med-data - Debian Med drug databases med-dental - Debian Med packages related to dental practice med-epi - Debian Med epidemiology related packages med-his - Debian Med suggestions for Hospital Information Systems med-imaging - Debian Med image processing and visualization packages med-imaging-dev - Debian Med image processing and visualization packages developmen med-laboratory - Debian Med suggestions for medical laboratories med-oncology - Debian Med packages for oncology med-pharmacy - Debian Med packages for pharmaceutical research med-physics - Debian Med packages for medical physicists med-practice - Debian Med packages for practice management med-psychology - Debian Med packages for psychology med-research - Debian Med packages for medical research med-statistics - Debian Med statistics med-tasks - Debian Med tasks for tasksel med-tools - Debian Med several tools med-typesetting - Debian Med support for typesetting and publishing Changes: debian-med (3.8.2) unstable; urgency=medium . * mriconvert removed from Debian * r-cran-treescape replaced by r-cran-treespace * aeskulap removed from Debian * miaviewit removed from Debian * Remove dicomnifti (see bug #1070243) * r-cran-rniftilib removed from Debian * Cleanup tasks from several removed packages * remove epigrass since we need to package dash first * squizz is removed from Debian * igdiscover will be removed from Debian * Standards-Version: 4.7.0 * Rules-Requires-Root: no . * start of automatic changelog entry * . * Changes in metapackage dependencies -med-bio added: Recommends: bifrost, deblur, r-cran-treespace, veryfasttree, python3-bioxtasraw, ctffind removed: Recommends: squizz, r-cran-treescape, logol, igdiscover, raccoon, r-cran-metamix Suggests: epigrass -med-bio-dev added: Suggests: cwltest, libbifrost-dev, libbiojava4-java removed: Recommends: libbiococoa-dev, r-cran-metamix, libbiojava4-java Suggests: r-bioc-deseq -med-bio-ngs removed: Recommends: igdiscover -med-bio-phylogeny added: Recommends: fasttree, veryfasttree -med-cloud added: Recommends: veryfasttree removed: Recommends: squizz -med-covid-19 removed: Recommends: conquest-common, pyomo, python3-typed-ast, epigrass, aeskulap -med-dental removed: Recommends: openmolar -med-epi removed: Recommends: epigrass -med-imaging added: Recommends: sightviewer, sightcalibrator removed: Recommends: dicomnifti, conquest-common, mriconvert, aeskulap Suggests: conquest-sqlite, conquest-postgres, conquest-dbase, conquest-mysql -med-imaging-dev removed: Recommends: libmiaviewit-dev, r-cran-rniftilib -med-pharmacy removed: Recommends: raccoon -med-psychology added: Suggests: python3-pynwb Checksums-Sha1: 10fa74097460335654c72c097633a4afc0a0a3a4 10979 debian-med_3.8.2_arm64.buildinfo d572dc7aeaf0475289e9339f13857948f7244a0f 7188 med-all_3.8.2_all.deb 25da279adadec423eb12d418f3d6da44313fb93e 11644 med-bio-dev_3.8.2_all.deb 74bd7df7ef8e44d87eb0f4bc187949edcba9d2f9 14448 med-bio_3.8.2_all.deb 05117da20b853ed6efe92bc0b41074b4282839ce 9932 med-cloud_3.8.2_all.deb 95b12f44ca772f9c4f5573e9d154b1df6217d7ce 11588 med-config_3.8.2_all.deb fa2bde2a09bf7352422f99fb8c4af265aeabd33b 9108 med-data_3.8.2_all.deb 34b28a5bbf55ddc16782b8819af901a302e69215 9084 med-dental_3.8.2_all.deb a6649592af43ce8b6a5d988ca958d4d0cfd3f59a 9620 med-epi_3.8.2_all.deb 6a1e1e5a98214649f3da1ee8247a5baf44f54234 9260 med-his_3.8.2_all.deb f013d881033df57ffeca4d4e6134557005688d14 9488 med-imaging-dev_3.8.2_all.deb 302b3d9adf8e169718024c33fea0d2b89e984768 10000 med-imaging_3.8.2_all.deb ad953da055a908b0ee950698b98689b5b0e20d99 9116 med-laboratory_3.8.2_all.deb 2500fc601d6a4b2aff1a3b4485980c66ea331b47 9076 med-oncology_3.8.2_all.deb 017c17c74fa16dd4d41d66809335cf5cb00ec097 9100 med-pharmacy_3.8.2_all.deb 5497e54823b524fc644b5a9df7179806c1cfcd63 9404 med-physics_3.8.2_all.deb efa6a1b42e467c85fb805c733e44dd736b37b180 9260 med-practice_3.8.2_all.deb 955aa364da66dfea541fbd6a9e267534e1e97ca4 9176 med-psychology_3.8.2_all.deb c3e8fa8464eda28ca8b2ac176899fd646de49be5 9056 med-research_3.8.2_all.deb bf45f53644780108b234cc3edfffdc9279d8a364 9172 med-statistics_3.8.2_all.deb 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6a3a7306725bdbd7f081969cf88c678147d4ce386e443a4744b113bc953dfb2c 9056 med-research_3.8.2_all.deb 2a47ba302685a6e627a395b744554e73a7b20e3ff991ff4d1d8f431cf080ef25 9172 med-statistics_3.8.2_all.deb de45d21bfdf3fea33afb2b1f45485b8d47e394bb540db772c23b07714b9cb06a 8816 med-tasks_3.8.2_all.deb 7b427e6a344fc14858f680689d3c2f63d540bd683dbc744a0b7d945bb008fb92 9212 med-tools_3.8.2_all.deb 80201408d90a065315207519f6cef6c298d1d12bbf3f0031061931077c5cdf99 9144 med-typesetting_3.8.2_all.deb Files: 324edff9892b0a910d329b331a75d8f6 10979 misc optional debian-med_3.8.2_arm64.buildinfo dab1c0f9b42fa22f32e1d4ba48a00b99 7188 metapackages optional med-all_3.8.2_all.deb f68fffef0dfce2ae93e0c388d045b614 11644 metapackages optional med-bio-dev_3.8.2_all.deb 52cd4a53338e249ab6bdda95008d98a5 14448 metapackages optional med-bio_3.8.2_all.deb 5c415cf7eacda6f0e67ca2cb5266ff45 9932 metapackages optional med-cloud_3.8.2_all.deb 29196e0f751ccb23d1613639f54f7850 11588 misc optional med-config_3.8.2_all.deb 5126b321dfc36ccde078d61f1b7a6906 9108 metapackages optional med-data_3.8.2_all.deb 2507f8639382fc80fc99ddda3c299a4d 9084 metapackages optional med-dental_3.8.2_all.deb a2025c58898af13c14d6beaa557adefc 9620 metapackages optional med-epi_3.8.2_all.deb 323daae0cd7b95ab89a405fd8401608c 9260 metapackages optional med-his_3.8.2_all.deb bce6505cc861b874db70f0f2d4542606 9488 metapackages optional med-imaging-dev_3.8.2_all.deb 26728f611abddc2434de45d21c93edb7 10000 metapackages optional med-imaging_3.8.2_all.deb ca9211692b01f6997ab63a85677ff4d8 9116 metapackages optional med-laboratory_3.8.2_all.deb d19f862f5ca7e5dd10a5346c98e65f0c 9076 metapackages optional med-oncology_3.8.2_all.deb e5c19d7d1a39ac7632aee67493793712 9100 metapackages optional med-pharmacy_3.8.2_all.deb cddfcab68efd65fd7c9dc581da7030e2 9404 metapackages optional med-physics_3.8.2_all.deb b851fe476c1e7a755dffb87f4097b182 9260 metapackages optional med-practice_3.8.2_all.deb 5414308fdd9f14430b5e4b606146d41a 9176 metapackages optional med-psychology_3.8.2_all.deb de00154a9a5f1f2c51ff2920c678fc90 9056 metapackages optional med-research_3.8.2_all.deb 35c6e75e7d1fc72471d7f8da5a9bb685 9172 metapackages optional med-statistics_3.8.2_all.deb a35fa79f827614e152a00733a4a55f2d 8816 misc optional med-tasks_3.8.2_all.deb f75bacee4894433978b886a3bcc553ee 9212 metapackages optional med-tools_3.8.2_all.deb 0f6f078f5935a5ed308624dca4cfe6de 9144 metapackages optional med-typesetting_3.8.2_all.deb Thu Jan 16 20:54:15 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_2-70889.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.z0Un28GZ/debian-med_3.8.2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.z0Un28GZ/debian-med_3.8.2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.z0Un28GZ/debian-med_3.8.2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.z0Un28GZ/b1/debian-med_3.8.2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.z0Un28GZ/b2/debian-med_3.8.2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.347s) 0.347s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 673ms CPU time consumed: 668ms Thu Jan 16 20:54:16 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Thu Jan 16 20:54:16 UTC 2025 I: debian-med from trixie built successfully and reproducibly on arm64. Thu Jan 16 20:54:17 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Jan 16 20:54:17 UTC 2025 I: Submitting 12K b1/debian-med_3.8.2_arm64.buildinfo.asc Thu Jan 16 20:54:18 UTC 2025 I: Submitting 12K b2/debian-med_3.8.2_arm64.buildinfo.asc Thu Jan 16 20:54:19 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 16 20:54:19 UTC 2025 I: Done submitting .buildinfo files. Thu Jan 16 20:54:19 UTC 2025 I: Removing signed debian-med_3.8.2_arm64.buildinfo.asc files: removed './b1/debian-med_3.8.2_arm64.buildinfo.asc' removed './b2/debian-med_3.8.2_arm64.buildinfo.asc'