Sat Feb 22 17:08:48 UTC 2025 I: starting to build ea-utils/trixie/arm64 on jenkins on '2025-02-22 17:08' Sat Feb 22 17:08:48 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_1/61280/console.log Sat Feb 22 17:08:48 UTC 2025 I: Downloading source for trixie/ea-utils=1.1.2+dfsg-9 --2025-02-22 17:08:48-- http://deb.debian.org/debian/pool/main/e/ea-utils/ea-utils_1.1.2%2bdfsg-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2098 (2.0K) [text/prs.lines.tag] Saving to: ‘ea-utils_1.1.2+dfsg-9.dsc’ 0K .. 100% 367M=0s 2025-02-22 17:08:48 (367 MB/s) - ‘ea-utils_1.1.2+dfsg-9.dsc’ saved [2098/2098] Sat Feb 22 17:08:48 UTC 2025 I: ea-utils_1.1.2+dfsg-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ea-utils Binary: ea-utils Architecture: any Version: 1.1.2+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://expressionanalysis.github.io/ea-utils/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/ea-utils Vcs-Git: https://salsa.debian.org/med-team/ea-utils.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev Package-List: ea-utils deb science optional arch=any Checksums-Sha1: e35e9d1fb9f1320775c14069f561568186a2050c 136824 ea-utils_1.1.2+dfsg.orig.tar.xz e2589d9bb18a6c20735ebecfa112a2b672728955 32412 ea-utils_1.1.2+dfsg-9.debian.tar.xz Checksums-Sha256: d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f 136824 ea-utils_1.1.2+dfsg.orig.tar.xz a3900019c7f63cb3d585438d920948123504ba9a0f2a8197a062848a7adf8213 32412 ea-utils_1.1.2+dfsg-9.debian.tar.xz Files: 167255bd7a4c4910eb2b12b97afca4dc 136824 ea-utils_1.1.2+dfsg.orig.tar.xz a2615385ce5fee70026db58441c2c8e0 32412 ea-utils_1.1.2+dfsg-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmFsfXwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdomFg//bavLLcau5wl69ASK4gUmk5U2jhGQ FRaneSeHd+uc9ebRroUS4+1Y7Lx9MWVLLw0TJs4HgsWhKA9QonrtR94ghNx/zWFe h2VoxFZKU8t24OmzzsF2+UlDMdC/bknaG4t9Z99G4P3Mba1yg1qA44CRpNLPjIBz +otxsmAAtAwUQryaELp4CY2yhdOX7APb0f8OSGCT+OeTSBrTP8ZqFCmJ58CwBu7F pFKssGtVPAkn9n9jgwmxE/s08/99oKWQ3pPmkA1Pxc3x7UMuPt2UyIMd+jCCauel 6MhnFHEskz9QVLzAQerfIo3MwLMTM+ofFGEo4Wvn/ZmqL+e3mrKI5cGNd0m2LSLu YRnOYG6zjiAPIawp8X2VnqKH1JApKgnJjn3LvAbNPTvADw0ixFgHDCFKqPpFTJb+ KPK+ovNDXmC8ruhGYcNvVkmD7oIi0F5RoYZOwiMsmQ9MUOA0TZefUp0KDDA3uoVD hLOnn1lVlyjkSyLI3CzS7gsIyrkHsicDPlkNAdGcIDISeNNMM8TfwTfNrHFB4LbJ hEDpHe86prqabnE3hpFgTDLQB045gdkl4oTX4339QHuVPJ61PuT1F2CVEFatHenr mTrmA/cut7bi8Qf2ywLPnk7KrzptY9Bp1Zn6IhBPAr9cvWsZKPV+0ChWSs3eFXk4 pK7wTjFfR/RC3Kk= =cvna -----END PGP SIGNATURE----- Sat Feb 22 17:08:48 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 17:08:48 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Feb 22 17:08:48 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Feb 22 17:09:29 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 11:31:50 -12 2026 I: pbuilder-time-stamp: 1774654310 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ea-utils_1.1.2+dfsg-9.dsc] I: copying [./ea-utils_1.1.2+dfsg.orig.tar.xz] I: copying [./ea-utils_1.1.2+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ea-utils_1.1.2+dfsg-9.dsc: unsupported subcommand dpkg-source: info: extracting ea-utils in ea-utils-1.1.2+dfsg dpkg-source: info: unpacking ea-utils_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ea-utils_1.1.2+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying name-space-conflict.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying arm64.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3425047/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='008bc8cc10be41b0a0297ba0b4345fc8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3425047' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5DZFcCYp/pbuilderrc_jBqz --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5DZFcCYp/b1 --logfile b1/build.log ea-utils_1.1.2+dfsg-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3425047/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19922 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsparsehash-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 23.3 MB of archives. After unpacking 93.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libbam-dev arm64 0.1.19+dfsg-6 [110 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Fetched 23.3 MB in 0s (138 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19922 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-3_arm64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libbam-dev. Preparing to unpack .../31-libbam-dev_0.1.19+dfsg-6_arm64.deb ... Unpacking libbam-dev (0.1.19+dfsg-6) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../32-libgslcblas0_2.8+dfsg-5_arm64.deb ... Unpacking libgslcblas0:arm64 (2.8+dfsg-5) ... Selecting previously unselected package libgsl28:arm64. Preparing to unpack .../33-libgsl28_2.8+dfsg-5_arm64.deb ... Unpacking libgsl28:arm64 (2.8+dfsg-5) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../34-libgsl-dev_2.8+dfsg-5_arm64.deb ... Unpacking libgsl-dev (2.8+dfsg-5) ... Selecting previously unselected package libsparsehash-dev. Preparing to unpack .../35-libsparsehash-dev_2.0.3-2_all.deb ... Unpacking libsparsehash-dev (2.0.3-2) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libgslcblas0:arm64 (2.8+dfsg-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libsparsehash-dev (2.0.3-2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libgsl28:arm64 (2.8+dfsg-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbam-dev (0.1.19+dfsg-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-join fastq-join.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-multx.c: In function 'int main(int, char**)': fastq-multx.c:292:40: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 292 | getline(&q, &nq, fin[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~ fastq-multx.c:293:40: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 293 | getline(&q, &nq, fin[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~ fastq-multx.c:516:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 516 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-multx.c:517:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 517 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-multx.c:554:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-mcf.c: In function 'int main(int, char**)': fastq-mcf.c:633:65: warning: too many arguments for format [-Wformat-extra-args] 633 | fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c:849:56: warning: too many arguments for format [-Wformat-extra-args] 849 | fprintf(fstat, ", warning end was not reliable\n", ad[a].id, ad[a].seq); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c: In function 'bool arg_int_pair(const char*, int&, int&)': fastq-mcf.c:1657:6: warning: control reaches end of non-void function [-Wreturn-type] 1657 | b=atoi(strchr(optarg, ',')+1); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sam-stats.cpp: In member function 'int ibucket::operator[](int) const': sam-stats.cpp:140:9: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ varcall.cpp: In member function 'vfinal& vfinal::operator=(const vfinal&)': varcall.cpp:128:122: warning: no return statement in function returning non-void [-Wreturn-type] 128 | vfinal & operator=(vfinal const&x) {max_idl_seq=x.max_idl_seq; max_idl_cnt=x.max_idl_cnt; padj=x.padj; pcall=x.pcall;} | ^ | return *this; varcall.cpp: In member function 'virtual void VarStatVisitor::Visit(PileupSummary&)': varcall.cpp:1584:33: warning: too many arguments for format [-Wformat-extra-args] 1584 | fprintf(noise_f,"%d\t%c\t%f\t%f\n", p.Depth, pbase, noise, qnoise, mnqual); | ^~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' make -j12 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mkdir -p /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper cp fastq-mcf /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-mcf cp fastq-multx /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-multx cp fastq-join /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-join cp fastq-stats /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-stats cp sam-stats /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/sam-stats cp varcall /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/varcall cp fastx-graph /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastx-graph cp determine-phred /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/determine-phred cp randomFQ /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/randomFQ cp alc /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/alc make[2]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mv debian/ea-utils/usr/bin/alc debian/ea-utils/usr/bin/ea-alc make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'ea-utils-dbgsym' in '../ea-utils-dbgsym_1.1.2+dfsg-9_arm64.deb'. dpkg-deb: building package 'ea-utils' in '../ea-utils_1.1.2+dfsg-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ea-utils_1.1.2+dfsg-9_arm64.buildinfo dpkg-genchanges --build=binary -O../ea-utils_1.1.2+dfsg-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3425047 and its subdirectories I: Current time: Fri Mar 27 11:32:28 -12 2026 I: pbuilder-time-stamp: 1774654348 Sat Feb 22 17:09:30 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Feb 22 17:09:30 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Feb 22 17:10:18 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Feb 22 17:10:19 UTC 2025 I: ea-utils_1.1.2+dfsg-9_arm64.changes: Format: 1.8 Date: Sun, 17 Oct 2021 21:37:07 +0200 Source: ea-utils Binary: ea-utils ea-utils-dbgsym Architecture: arm64 Version: 1.1.2+dfsg-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: ea-utils - command-line tools for processing biological sequencing data Closes: 984043 Changes: ea-utils (1.1.2+dfsg-9) unstable; urgency=medium . * Team upload. * Add gcc11.patch to fix ftbfs with gcc 11. (Closes: #984043) Checksums-Sha1: 4d3039b34a3d44e7750409a94c73f3c1dcfac5ad 1556708 ea-utils-dbgsym_1.1.2+dfsg-9_arm64.deb 15da6aab2c261fbc0c658bda76d194c6a3cba8eb 5086 ea-utils_1.1.2+dfsg-9_arm64.buildinfo 2c3d48ebf7611c98304cecec9d1cceed30d85ae9 220684 ea-utils_1.1.2+dfsg-9_arm64.deb Checksums-Sha256: be5c09fe50b90eb7cd8b8ccef60a3ae46752b7a07fdb2f3cae2a98900009545c 1556708 ea-utils-dbgsym_1.1.2+dfsg-9_arm64.deb 091b364f8c4d70b8fabecc1af36720454786f05127915c0529762ad8a9e5e58c 5086 ea-utils_1.1.2+dfsg-9_arm64.buildinfo c8eb6d36021f31915c001d0a542abd44efef08820f6dadf7bc9c61c65582e052 220684 ea-utils_1.1.2+dfsg-9_arm64.deb Files: bd8dbd79c8f14e722826084e391182d8 1556708 debug optional ea-utils-dbgsym_1.1.2+dfsg-9_arm64.deb 4b150d64269bc0044c1683fe9c580603 5086 science optional ea-utils_1.1.2+dfsg-9_arm64.buildinfo 60578e74cb33f7f05dffccf59cce6ac8 220684 science optional ea-utils_1.1.2+dfsg-9_arm64.deb Sat Feb 22 17:10:20 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_1-61280.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5DZFcCYp/ea-utils_1.1.2+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5DZFcCYp/ea-utils_1.1.2+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5DZFcCYp/ea-utils_1.1.2+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5DZFcCYp/b1/ea-utils_1.1.2+dfsg-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5DZFcCYp/b2/ea-utils_1.1.2+dfsg-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 238ms CPU time consumed: 239ms Sat Feb 22 17:10:23 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 17:10:23 UTC 2025 I: ea-utils from trixie built successfully and reproducibly on arm64. Sat Feb 22 17:10:24 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 17:10:24 UTC 2025 I: Submitting 8.0K b1/ea-utils_1.1.2+dfsg-9_arm64.buildinfo.asc Sat Feb 22 17:10:25 UTC 2025 I: Submitting 8.0K b2/ea-utils_1.1.2+dfsg-9_arm64.buildinfo.asc Sat Feb 22 17:10:26 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 17:10:26 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 17:10:26 UTC 2025 I: Removing signed ea-utils_1.1.2+dfsg-9_arm64.buildinfo.asc files: removed './b1/ea-utils_1.1.2+dfsg-9_arm64.buildinfo.asc' removed './b2/ea-utils_1.1.2+dfsg-9_arm64.buildinfo.asc'