Sat Mar 15 20:34:51 UTC 2025 I: starting to build elph/trixie/arm64 on jenkins on '2025-03-15 20:34' Sat Mar 15 20:34:51 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/79383/console.log Sat Mar 15 20:34:51 UTC 2025 I: Downloading source for trixie/elph=1.0.1-5 --2025-03-15 20:34:51-- http://deb.debian.org/debian/pool/main/e/elph/elph_1.0.1-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1960 (1.9K) [text/prs.lines.tag] Saving to: ‘elph_1.0.1-5.dsc’ 0K . 100% 274M=0s 2025-03-15 20:34:51 (274 MB/s) - ‘elph_1.0.1-5.dsc’ saved [1960/1960] Sat Mar 15 20:34:51 UTC 2025 I: elph_1.0.1-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: elph Binary: elph Architecture: any Version: 1.0.1-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://www.cbcb.umd.edu/software/ELPH/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/elph Vcs-Git: https://salsa.debian.org/med-team/elph.git Testsuite: autopkgtest Testsuite-Triggers: igor Build-Depends: debhelper-compat (= 13), help2man Package-List: elph deb science optional arch=any Checksums-Sha1: 892ef4811063ac95c11e41eae96c419f7ddafede 37188 elph_1.0.1.orig.tar.xz e55bdb5a9e2e8e381c1adb1826c4cfc54b8cd3bc 4000 elph_1.0.1-5.debian.tar.xz Checksums-Sha256: fd538b86759b9b49e20e415039b130d94e4fed5d7e4bbfa0b2649f650eb806e6 37188 elph_1.0.1.orig.tar.xz 57f74c77519812947a87569ddf262fd3f9a1e3a30f550db501d07958c85d7622 4000 elph_1.0.1-5.debian.tar.xz Files: f77c9c4f47ae4b5cd69c9d78d673ffc4 37188 elph_1.0.1.orig.tar.xz 58e0cfe01d8e39f83d292de9512c41dd 4000 elph_1.0.1-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl77X44UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEsKBAAgYWT1/UaZstj1n0yr7s8GtNEaCJM pNTZlgURpETZGaHuo9M1U5t73fAJGoDy5brFQI5GfeRA6IONPFmZX5wS0CJTAvjh m02LYEtX9rukaOoGUdFD6CVaWHBOKqD7cfsNVCPkUfFzM8D9PtjSzPqWQeV8m/R/ 7uhFBWDSzQIw0EKb0UDSIB+gUuqEm5xp7o/LH0PVDWnT0rxs3TYAamjT3CT1Vmqo asOKtjtyJ75gvQNnVX44QamL9vQLpP/d6ha1nzc/RYxVHwD5+Vo4kUICmtHrTUBa ksiK2waU67TFLACwWHkTN9zunZOTOiG3k2k/UFsqoNkPNp9eOu/zBa2MDhQnVMN6 VGHq76m6Hyqx//AGzuX/+qNffueJbG4y8yEuLOVfZkTwEkRKUaFg1u7uCXp2HVth KX9+O+Z44AzNAgVnuw5ABoXAEgsnK75RcZmcXcXC/qkPV2u67SbVzGg29VAKaOpD T+lIiAsJC6qMeYwFBIjFedcwMplm3ox9Kz31vKCV4J9PLsoKmYKFQUrYYo6tDSAc Olr8DLEY2xrP3uhBONsgwf/V2sdTrv3TZw+hIqqFqAW7cZnn+fmg16qEzWJtVrz+ AXl4V4PqLqCzoF0VyQKuWFis6ctjuTIKZ30tKN0plu6wJvJUUanGfaJ67ZUoRKSz et/EOQ1rOgy36TE= =FVa+ -----END PGP SIGNATURE----- Sat Mar 15 20:34:51 UTC 2025 I: Checking whether the package is not for us Sat Mar 15 20:34:51 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Mar 15 20:34:51 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Mar 15 20:35:18 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 17 14:57:53 -12 2026 I: pbuilder-time-stamp: 1776481073 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [elph_1.0.1-5.dsc] I: copying [./elph_1.0.1.orig.tar.xz] I: copying [./elph_1.0.1-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./elph_1.0.1-5.dsc: unsupported subcommand dpkg-source: info: extracting elph in elph-1.0.1 dpkg-source: info: unpacking elph_1.0.1.orig.tar.xz dpkg-source: info: unpacking elph_1.0.1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying toplevelmakefile.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying clang.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3334425/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='dddf13729fc048d19b13984815247672' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3334425' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3DxyAiyO/pbuilderrc_JyTI --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3DxyAiyO/b1 --logfile b1/build.log elph_1.0.1-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3334425/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB of archives. After unpacking 80.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Fetched 20.3 MB in 0s (99.8 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.4-5_arm64.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-7_arm64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../24-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../25-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b2_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package help2man. Preparing to unpack .../31-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.41-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/elph-1.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../elph_1.0.1-5_source.changes dpkg-buildpackage: info: source package elph dpkg-buildpackage: info: source version 1.0.1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=sources debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/elph-1.0.1' dh_auto_clean cd sources && make -j12 clean make[2]: Entering directory '/build/reproducible-path/elph-1.0.1/sources' make[2]: Leaving directory '/build/reproducible-path/elph-1.0.1/sources' rm -f debian/elph.1 make[1]: Leaving directory '/build/reproducible-path/elph-1.0.1' dh_autoreconf_clean -O--sourcedirectory=sources dh_clean -O--sourcedirectory=sources rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/elph.substvars debian/files rm -fr -- debian/elph/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --sourcedirectory=sources dh_update_autotools_config -O--sourcedirectory=sources dh_autoreconf -O--sourcedirectory=sources dh_auto_configure -O--sourcedirectory=sources debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/elph-1.0.1' dpkg-architecture -f -aarm64 -c dh_auto_build -- LINKER='$(CXX)' cd sources && make -j12 "INSTALL=install --strip-program=true" LINKER=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/elph-1.0.1/sources' g++ -Wall -I. -fno-exceptions -fno-rtti -D_REENTRANT -g -g -O2 -ffile-prefix-map=/build/reproducible-path/elph-1.0.1/sources=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c elph.cc -o elph.o g++ -Wall -I. -fno-exceptions -fno-rtti -D_REENTRANT -g -g -O2 -ffile-prefix-map=/build/reproducible-path/elph-1.0.1/sources=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c motif.cc -o motif.o g++ -Wall -I. -fno-exceptions -fno-rtti -D_REENTRANT -g -g -O2 -ffile-prefix-map=/build/reproducible-path/elph-1.0.1/sources=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c GBase.cpp -o GBase.o In file included from elph.cc:5: GString.h:128:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 128 | GString& trim(char* c=" \t\n\r"); | ^~~~~~~~~ GString.h:129:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 129 | GString& trimR(char* c=" \t\n\r"); //trim only right end | ^~~~~~~~~ GString.h:131:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 131 | GString& trimL(char* c=" \t\n\r"); //trim only left end | ^~~~~~~~~ GString.h:136:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 136 | size_t read(FILE* stream, char* delimiter="\n", size_t bufsize=4096); | ^~~~ elph.cc: In function 'int main(int, char**)': elph.cc:81:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 81 | GArgs args(argc, argv, "ho:abreglvdzxt:p:s:m:n:LEN=ITERNO=MAXLOOP=SGFNO="); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wall -I. -fno-exceptions -fno-rtti -D_REENTRANT -g -g -O2 -ffile-prefix-map=/build/reproducible-path/elph-1.0.1/sources=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c GString.cpp -o GString.o elph.cc:134:30: warning: 'info' may be used uninitialized [-Wmaybe-uninitialized] 134 | globAlignProb=M->optimize(globAlignProb,info,closest); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ elph.cc:127:12: note: 'info' was declared here 127 | double info; | ^~~~ g++ -Wall -I. -fno-exceptions -fno-rtti -D_REENTRANT -g -g -O2 -ffile-prefix-map=/build/reproducible-path/elph-1.0.1/sources=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c GArgs.cpp -o GArgs.o motif.cc: In member function 'double Motif::findMotif(int, int, int, int, int)': motif.cc:2876:14: warning: variable 'prevProb' set but not used [-Wunused-but-set-variable] 2876 | double prevProb=0; | ^~~~~~~~ motif.cc:2878:14: warning: variable 'locMaxInfo' set but not used [-Wunused-but-set-variable] 2878 | double locMaxInfo=0; | ^~~~~~~~~~ GBase.cpp: In function 'int strhash(const char*)': GBase.cpp:211:16: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 211 | register int h=0; | ^ GBase.cpp:212:16: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 212 | register int g; | ^ In file included from GString.cpp:2: GString.h:128:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 128 | GString& trim(char* c=" \t\n\r"); | ^~~~~~~~~ GString.h:129:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 129 | GString& trimR(char* c=" \t\n\r"); //trim only right end | ^~~~~~~~~ GString.h:131:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 131 | GString& trimL(char* c=" \t\n\r"); //trim only left end | ^~~~~~~~~ GString.h:136:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 136 | size_t read(FILE* stream, char* delimiter="\n", size_t bufsize=4096); | ^~~~ GString.cpp: In member function 'GString& GString::trim(char)': GString.cpp:367:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 367 | register int istart; | ^~~~~~ GString.cpp:368:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 368 | register int iend; | ^~~~ GString.cpp: In member function 'GString& GString::trim(char*)': GString.cpp:387:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 387 | register int istart; | ^~~~~~ GString.cpp:388:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 388 | register int iend; | ^~~~ GString.cpp: In member function 'GString& GString::trimR(char)': GString.cpp:408:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 408 | register int iend; | ^~~~ GString.cpp: In member function 'GString& GString::trimR(char*)': GString.cpp:426:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register int iend; | ^~~~ GString.cpp: In member function 'GString& GString::trimL(char)': GString.cpp:443:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 443 | register int istart; | ^~~~~~ GString.cpp: In member function 'GString& GString::trimL(char*)': GString.cpp:460:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 460 | register int istart; | ^~~~~~ GString.cpp: In member function 'bool GString::is_space() const': GString.cpp:601:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 601 | for (register const char *p = chars(); *p; p++) | ^ GString.cpp: In member function 'GString& GString::upper()': GString.cpp:892:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 892 | for (register char *p = chrs(); *p; p++) | ^ GString.cpp: In member function 'GString& GString::lower()': GString.cpp:903:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 903 | for (register char *p = chrs(); *p; p++) | ^ In file included from GBase.cpp:5: GBase.cpp: In function 'char* Gsubstr(const char*, char*, char*)': GBase.h:64:28: warning: 'subs' may be used uninitialized [-Wmaybe-uninitialized] 64 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \ | ^~ GBase.cpp:98:2: note: in expansion of macro 'GMALLOC' 98 | GMALLOC(subs, newlen); | ^~~~~~~ GBase.cpp:97:8: note: 'subs' was declared here 97 | char* subs; | ^~~~ motif.cc: In member function 'double Motif::findMDet(int)': motif.cc:1222:9: warning: 'maxinfo' may be used uninitialized [-Wmaybe-uninitialized] 1222 | diff=maxinfo-optinfo; | ~~~~^~~~~~~~~~~~~~~~ motif.cc:1187:12: note: 'maxinfo' was declared here 1187 | double maxinfo; | ^~~~~~~ motif.cc: In constructor 'Motif::Motif(const char*, FILE*, seqType, const char*, const char*, int, int, int, int, int)': motif.cc:1045:29: warning: 'info' may be used uninitialized [-Wmaybe-uninitialized] 1045 | globAlignProb=optimize(globAlignProb,info,0); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ motif.cc:1042:14: note: 'info' was declared here 1042 | double info; | ^~~~ g++ -o elph elph.o motif.o GBase.o GString.o GArgs.o make[2]: Leaving directory '/build/reproducible-path/elph-1.0.1/sources' help2man -h "-h" -n ELPH --version-string=1.0.1 --no-discard-stderr sources/elph > debian/elph.1 make[1]: Leaving directory '/build/reproducible-path/elph-1.0.1' dh_auto_test -O--sourcedirectory=sources rm -fr -- /tmp/dh-xdg-rundir-06TOovqR create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=sources dh_prep -O--sourcedirectory=sources rm -f -- debian/elph.substvars rm -fr -- debian/.debhelper/generated/elph/ debian/elph/ debian/tmp/ dh_auto_install --destdir=debian/elph/ -O--sourcedirectory=sources install -m0755 -d /build/reproducible-path/elph-1.0.1/debian/elph dh_install -O--sourcedirectory=sources install -m0755 -d debian/elph/usr/bin cp --reflink=auto -a ./sources/elph debian/elph/usr/bin/ dh_installdocs -O--sourcedirectory=sources install -m0755 -d debian/elph/usr/share/doc/elph install -m0755 -d debian/elph/usr/share/doc/elph cp --reflink=auto -a ./debian/README.Debian debian/elph/usr/share/doc/elph cp --reflink=auto -a ./debian/README.source debian/elph/usr/share/doc/elph cp --reflink=auto -a ./README debian/elph/usr/share/doc/elph cp --reflink=auto -a ./Readme.ELPH debian/elph/usr/share/doc/elph chmod -R u\+rw,go=rX debian/elph/usr/share/doc install -p -m0644 debian/README.Debian debian/elph/usr/share/doc/elph/README.Debian install -p -m0644 debian/copyright debian/elph/usr/share/doc/elph/copyright dh_installchangelogs -O--sourcedirectory=sources install -m0755 -d debian/elph/usr/share/doc/elph install -p -m0644 debian/.debhelper/generated/elph/dh_installchangelogs.dch.trimmed debian/elph/usr/share/doc/elph/changelog.Debian dh_installman -O--sourcedirectory=sources install -m0755 -d debian/elph/usr/share/man/man1/ install -p -m0644 ./debian/elph.1 debian/elph/usr/share/man/man1/elph.1 man-recode --to-code UTF-8 --suffix .dh-new debian/elph/usr/share/man/man1/elph.1 mv debian/elph/usr/share/man/man1/elph.1.dh-new debian/elph/usr/share/man/man1/elph.1 chmod 0644 -- debian/elph/usr/share/man/man1/elph.1 dh_installsystemduser -O--sourcedirectory=sources dh_perl -O--sourcedirectory=sources dh_link -O--sourcedirectory=sources dh_strip_nondeterminism -O--sourcedirectory=sources dh_compress -O--sourcedirectory=sources cd debian/elph chmod a-x usr/share/doc/elph/Readme.ELPH usr/share/doc/elph/changelog.Debian usr/share/man/man1/elph.1 gzip -9nf usr/share/doc/elph/Readme.ELPH usr/share/doc/elph/changelog.Debian usr/share/man/man1/elph.1 cd '/build/reproducible-path/elph-1.0.1' dh_fixperms -O--sourcedirectory=sources find debian/elph ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/elph/usr/share/doc -type f -a -true -a ! -regex 'debian/elph/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/elph/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/elph/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/elph -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/elph/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--sourcedirectory=sources dh_dwz -a -O--sourcedirectory=sources dwz -- debian/elph/usr/bin/elph dh_strip -a -O--sourcedirectory=sources install -m0755 -d debian/.debhelper/elph/dbgsym-root/usr/lib/debug/.build-id/e3 objcopy --only-keep-debug --compress-debug-sections debian/elph/usr/bin/elph debian/.debhelper/elph/dbgsym-root/usr/lib/debug/.build-id/e3/00a6c4a84ae18f4a6982faaba06eb355506061.debug chmod 0644 -- debian/.debhelper/elph/dbgsym-root/usr/lib/debug/.build-id/e3/00a6c4a84ae18f4a6982faaba06eb355506061.debug strip --remove-section=.comment --remove-section=.note debian/elph/usr/bin/elph objcopy --add-gnu-debuglink debian/.debhelper/elph/dbgsym-root/usr/lib/debug/.build-id/e3/00a6c4a84ae18f4a6982faaba06eb355506061.debug debian/elph/usr/bin/elph install -m0755 -d debian/.debhelper/elph/dbgsym-root/usr/share/doc ln -s elph debian/.debhelper/elph/dbgsym-root/usr/share/doc/elph-dbgsym install -m0755 -d debian/.debhelper/elph dh_makeshlibs -a -O--sourcedirectory=sources rm -f debian/elph/DEBIAN/shlibs dh_shlibdeps -a -O--sourcedirectory=sources install -m0755 -d debian/elph/DEBIAN dpkg-shlibdeps -Tdebian/elph.substvars debian/elph/usr/bin/elph dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--sourcedirectory=sources install -m0755 -d debian/elph/DEBIAN dh_gencontrol -O--sourcedirectory=sources install -m0755 -d debian/elph/DEBIAN echo misc:Depends= >> debian/elph.substvars echo misc:Pre-Depends= >> debian/elph.substvars install -m0755 -d debian/.debhelper/elph/dbgsym-root/DEBIAN dpkg-gencontrol -pelph -ldebian/changelog -Tdebian/elph.substvars -cdebian/control -Pdebian/.debhelper/elph/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=elph-dbgsym "-DDepends=elph (= \${binary:Version})" "-DDescription=debug symbols for elph" -DBuild-Ids=e300a6c4a84ae18f4a6982faaba06eb355506061 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/elph/dbgsym-root/DEBIAN/control dpkg-gencontrol -pelph -ldebian/changelog -Tdebian/elph.substvars -cdebian/control -Pdebian/elph chmod 0644 -- debian/elph/DEBIAN/control dh_md5sums -O--sourcedirectory=sources install -m0755 -d debian/elph/DEBIAN cd debian/elph >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/elph/DEBIAN/md5sums install -m0755 -d debian/.debhelper/elph/dbgsym-root/DEBIAN cd debian/.debhelper/elph/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/elph/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--sourcedirectory=sources dpkg-deb --root-owner-group --build debian/elph .. dpkg-deb --root-owner-group --build debian/.debhelper/elph/dbgsym-root .. dpkg-deb: building package 'elph' in '../elph_1.0.1-5_arm64.deb'. dpkg-deb: building package 'elph-dbgsym' in '../elph-dbgsym_1.0.1-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../elph_1.0.1-5_arm64.buildinfo dpkg-genchanges --build=binary -O../elph_1.0.1-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3334425 and its subdirectories I: Current time: Fri Apr 17 14:58:17 -12 2026 I: pbuilder-time-stamp: 1776481097 Sat Mar 15 20:35:19 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Mar 15 20:35:19 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Mar 15 20:36:09 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Mar 15 20:36:10 UTC 2025 I: elph_1.0.1-5_arm64.changes: Format: 1.8 Date: Tue, 30 Jun 2020 20:41:48 +0530 Source: elph Binary: elph elph-dbgsym Architecture: arm64 Version: 1.0.1-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: elph - DNA/protein sequence motif finder Changes: elph (1.0.1-5) unstable; urgency=medium . * Team Upload. * compat version: 13 * Add "Rules-Requires-Root:no" * Add autopkgtests * Bump standards version to 4.5.0 * Add salsa-ci.yml Checksums-Sha1: c821426b459d5ed93f5e8408e67a15f2f3927b74 127480 elph-dbgsym_1.0.1-5_arm64.deb 15bca57a2b0618a35a3b1f3d4f28d9ca3bce285a 4875 elph_1.0.1-5_arm64.buildinfo 32db215a14a06a41b5c9c7bb66e81f2b62b11a2a 46748 elph_1.0.1-5_arm64.deb Checksums-Sha256: 6124036aa052b2dc1f5f52b11ca3539271b9a758c046c1cda6d1b5a71336c4a1 127480 elph-dbgsym_1.0.1-5_arm64.deb ad75eafca649c9095f87d150560160456a51881e749eb7892cdf3af3b2905bf6 4875 elph_1.0.1-5_arm64.buildinfo 8ec8f71efec6d13d786a3bbe6dd835c46e58ecb1b5e1df0b0423e60832830745 46748 elph_1.0.1-5_arm64.deb Files: b8b81984290fa21d7190ae24a9579e57 127480 debug optional elph-dbgsym_1.0.1-5_arm64.deb dc3a746cee2125cfd2ff1ef86a5c4486 4875 science optional elph_1.0.1-5_arm64.buildinfo 81ce9627160f4047147ccdde0cd55836 46748 science optional elph_1.0.1-5_arm64.deb Sat Mar 15 20:36:11 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_2-79383.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3DxyAiyO/elph_1.0.1-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3DxyAiyO/elph_1.0.1-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3DxyAiyO/elph_1.0.1-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3DxyAiyO/b1/elph_1.0.1-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3DxyAiyO/b2/elph_1.0.1-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 273ms CPU time consumed: 271ms Sat Mar 15 20:36:12 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sat Mar 15 20:36:12 UTC 2025 I: elph from trixie built successfully and reproducibly on arm64. Sat Mar 15 20:36:13 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Mar 15 20:36:13 UTC 2025 I: Submitting 8.0K b1/elph_1.0.1-5_arm64.buildinfo.asc Sat Mar 15 20:36:14 UTC 2025 I: Submitting 8.0K b2/elph_1.0.1-5_arm64.buildinfo.asc Sat Mar 15 20:36:15 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Mar 15 20:36:15 UTC 2025 I: Done submitting .buildinfo files. Sat Mar 15 20:36:15 UTC 2025 I: Removing signed elph_1.0.1-5_arm64.buildinfo.asc files: removed './b1/elph_1.0.1-5_arm64.buildinfo.asc' removed './b2/elph_1.0.1-5_arm64.buildinfo.asc'