Wed Feb 5 19:40:35 UTC 2025 I: starting to build isospec/trixie/arm64 on jenkins on '2025-02-05 19:40'
Wed Feb 5 19:40:35 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/78314/console.log
Wed Feb 5 19:40:35 UTC 2025 I: Downloading source for trixie/isospec=2.2.1-4.1
--2025-02-05 19:40:36-- http://deb.debian.org/debian/pool/main/i/isospec/isospec_2.2.1-4.1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2471 (2.4K) [text/prs.lines.tag]
Saving to: ‘isospec_2.2.1-4.1.dsc’
0K .. 100% 321M=0s
2025-02-05 19:40:36 (321 MB/s) - ‘isospec_2.2.1-4.1.dsc’ saved [2471/2471]
Wed Feb 5 19:40:36 UTC 2025 I: isospec_2.2.1-4.1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: isospec
Binary: libisospec++-dev, libisospec++2t64, python3-isospec, libisospec++-doc
Architecture: any all
Version: 2.2.1-4.1
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Uploaders: Filippo Rusconi <lopippo@debian.org>
Homepage: https://github.com/MatteoLacki/IsoSpec
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/debichem-team/isospec
Vcs-Git: https://salsa.debian.org/debichem-team/isospec.git
Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-exec, graphicsmagick-imagemagick-compat, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, python3-cffi, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax
Package-List:
libisospec++-dev deb libdevel optional arch=any
libisospec++-doc deb doc optional arch=all
libisospec++2t64 deb libs optional arch=any
python3-isospec deb python optional arch=any
Checksums-Sha1:
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0cf29c35867d6bcfc8861edd72420022159549ff 33820 isospec_2.2.1-4.1.debian.tar.xz
Checksums-Sha256:
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bec1f71e66f509178ca846639ba460ecd684f42054b33229e4911dc4676e8c32 33820 isospec_2.2.1-4.1.debian.tar.xz
Files:
647bdc19f31afe75d06e434b7ed8fa44 2173213 isospec_2.2.1.orig.tar.gz
40213f0f07cf97e9c2b94ba6329bf1f8 33820 isospec_2.2.1-4.1.debian.tar.xz
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Wed Feb 5 19:40:36 UTC 2025 I: Checking whether the package is not for us
Wed Feb 5 19:40:36 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net.
Wed Feb 5 19:40:36 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net.
Wed Feb 5 19:44:11 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Mar 10 14:03:37 -12 2026
I: pbuilder-time-stamp: 1773194617
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [isospec_2.2.1-4.1.dsc]
I: copying [./isospec_2.2.1.orig.tar.gz]
I: copying [./isospec_2.2.1-4.1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./isospec_2.2.1-4.1.dsc: unsupported subcommand
dpkg-source: info: extracting isospec in isospec-2.2.1
dpkg-source: info: unpacking isospec_2.2.1.orig.tar.gz
dpkg-source: info: unpacking isospec_2.2.1-4.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-Ensure-the-header-files-are-found-in-the-system.patch
dpkg-source: info: applying 0002-Remove-the-mtune-native-march-native.patch
dpkg-source: info: applying software-version.patch
dpkg-source: info: applying 0003-cmake-directive-avoid-rpath.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1867222/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='852d66015867418bb30f8cbb083d3444'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='1867222'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.neLPUE7O/pbuilderrc_ihRr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.neLPUE7O/b1 --logfile b1/build.log isospec_2.2.1-4.1.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/1867222/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-exec, graphicsmagick-imagemagick-compat, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, python3-cffi, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19957 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-exec; however:
Package dh-exec is not installed.
pbuilder-satisfydepends-dummy depends on graphicsmagick-imagemagick-compat; however:
Package graphicsmagick-imagemagick-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs; however:
Package d-shlibs is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-dev; however:
Package python3-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-cffi; however:
Package python3-cffi is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
Package texlive-latex-base is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
Package texlive-latex-recommended is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
Package texlive-latex-extra is not installed.
pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however:
Package texlive-plain-generic is not installed.
pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
Package texlive-fonts-recommended is not installed.
pbuilder-satisfydepends-dummy depends on texlive-font-utils; however:
Package texlive-font-utils is not installed.
pbuilder-satisfydepends-dummy depends on ghostscript; however:
Package ghostscript is not installed.
pbuilder-satisfydepends-dummy depends on doxygen; however:
Package doxygen is not installed.
pbuilder-satisfydepends-dummy depends on libjs-mathjax; however:
Package libjs-mathjax is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-mathjax{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} graphicsmagick{a} graphicsmagick-imagemagick-compat{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo2{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgif7{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphicsmagick-q16-3t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhwy1t64{a} libice6{a} libicu72{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libimath-3-1-29t64{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libjxl0.10{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libopenexr-3-1-30{a} libopenjp2-7{a} libp11-kit0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsynctex2{a} libtasn1-6{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libwebp7{a} libwebpmux3{a} libwmflite-0.2-7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libz3-4{a} libzzip-0-13t64{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-autocommand{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback javascript-common krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libheif-plugin-aomenc libheif-plugin-x265 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lmodern lynx ps2eps psmisc publicsuffix ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 209 newly installed, 0 to remove and 0 not upgraded.
Need to get 282 MB of archives. After unpacking 1077 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 poppler-data all 0.4.12-1 [1601 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.1-3+b1 [852 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.1-3+b1 [1987 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.1-3+b1 [1913 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.1-3+b1 [740 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B]
Get: 15 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.1-2 [28.0 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B]
Get: 29 http://deb.debian.org/debian trixie/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get: 30 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0049 [42.5 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.5-1 [2267 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 38 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 39 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get: 40 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 41 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 42 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 43 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 44 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 45 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 46 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 47 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 48 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 49 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 50 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 51 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 52 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 53 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 54 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 55 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB]
Get: 56 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB]
Get: 57 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 58 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 59 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB]
Get: 60 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get: 61 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get: 62 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB]
Get: 63 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.5-1 [9898 kB]
Get: 64 http://deb.debian.org/debian trixie/main arm64 d-shlibs all 0.109 [11.1 kB]
Get: 65 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 66 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB]
Get: 67 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 68 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 69 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 70 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 71 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 72 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 73 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 74 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 75 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 76 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Get: 77 http://deb.debian.org/debian trixie/main arm64 dh-exec arm64 0.30+b1 [25.8 kB]
Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 89 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB]
Get: 90 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB]
Get: 91 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB]
Get: 92 http://deb.debian.org/debian trixie/main arm64 libllvm19 arm64 1:19.1.6-1+b1 [23.3 MB]
Get: 93 http://deb.debian.org/debian trixie/main arm64 libclang-cpp19 arm64 1:19.1.6-1+b1 [12.0 MB]
Get: 94 http://deb.debian.org/debian trixie/main arm64 libclang1-19 arm64 1:19.1.6-1+b1 [6848 kB]
Get: 95 http://deb.debian.org/debian trixie/main arm64 libfmt10 arm64 10.1.1+ds1-4 [121 kB]
Get: 96 http://deb.debian.org/debian trixie/main arm64 doxygen arm64 1.9.8+ds-2+b3 [4515 kB]
Get: 97 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 98 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 99 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB]
Get: 100 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-3 [273 kB]
Get: 101 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 102 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB]
Get: 103 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 104 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB]
Get: 105 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get: 106 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB]
Get: 107 http://deb.debian.org/debian trixie/main arm64 fonts-lmodern all 2.005-1 [4540 kB]
Get: 108 http://deb.debian.org/debian trixie/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get: 109 http://deb.debian.org/debian trixie/main arm64 libgs-common all 10.04.0~dfsg-2 [148 kB]
Get: 110 http://deb.debian.org/debian trixie/main arm64 libgs10-common all 10.04.0~dfsg-2 [475 kB]
Get: 111 http://deb.debian.org/debian trixie/main arm64 libavahi-common-data arm64 0.8-16 [112 kB]
Get: 112 http://deb.debian.org/debian trixie/main arm64 libavahi-common3 arm64 0.8-16 [43.3 kB]
Get: 113 http://deb.debian.org/debian trixie/main arm64 libdbus-1-3 arm64 1.16.0-1 [168 kB]
Get: 114 http://deb.debian.org/debian trixie/main arm64 libavahi-client3 arm64 0.8-16 [46.7 kB]
Get: 115 http://deb.debian.org/debian trixie/main arm64 libcups2t64 arm64 2.4.10-2+b1 [236 kB]
Get: 116 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB]
Get: 117 http://deb.debian.org/debian trixie/main arm64 libidn12 arm64 1.42-2+b1 [80.2 kB]
Get: 118 http://deb.debian.org/debian trixie/main arm64 libijs-0.35 arm64 0.35-15.1+b2 [14.9 kB]
Get: 119 http://deb.debian.org/debian trixie/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB]
Get: 120 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB]
Get: 121 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get: 122 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB]
Get: 123 http://deb.debian.org/debian trixie/main arm64 libpaper2 arm64 2.2.5-0.3 [16.3 kB]
Get: 124 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 125 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 126 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 127 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB]
Get: 128 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB]
Get: 129 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get: 130 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 131 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 132 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 133 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 134 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 135 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB]
Get: 136 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB]
Get: 137 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB]
Get: 138 http://deb.debian.org/debian trixie/main arm64 libgs10 arm64 10.04.0~dfsg-2+b1 [2351 kB]
Get: 139 http://deb.debian.org/debian trixie/main arm64 ghostscript arm64 10.04.0~dfsg-2+b1 [51.0 kB]
Get: 140 http://deb.debian.org/debian trixie/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB]
Get: 141 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-dav1d arm64 1.19.5-1+b1 [11.5 kB]
Get: 142 http://deb.debian.org/debian trixie/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB]
Get: 143 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-libde265 arm64 1.19.5-1+b1 [15.4 kB]
Get: 144 http://deb.debian.org/debian trixie/main arm64 libheif1 arm64 1.19.5-1+b1 [438 kB]
Get: 145 http://deb.debian.org/debian trixie/main arm64 libgif7 arm64 5.2.2-1+b1 [44.2 kB]
Get: 146 http://deb.debian.org/debian trixie/main arm64 libhwy1t64 arm64 1.2.0-2+b2 [499 kB]
Get: 147 http://deb.debian.org/debian trixie/main arm64 libimath-3-1-29t64 arm64 3.1.12-1+b3 [38.0 kB]
Get: 148 http://deb.debian.org/debian trixie/main arm64 libopenexr-3-1-30 arm64 3.1.5-5.1+b4 [856 kB]
Get: 149 http://deb.debian.org/debian trixie/main arm64 libjxl0.10 arm64 0.10.4-2 [854 kB]
Get: 150 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB]
Get: 151 http://deb.debian.org/debian trixie/main arm64 libwmflite-0.2-7 arm64 0.2.13-1.1+b3 [72.0 kB]
Get: 152 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 153 http://deb.debian.org/debian trixie/main arm64 libgraphicsmagick-q16-3t64 arm64 1.4+really1.3.45-1+b2 [1079 kB]
Get: 154 http://deb.debian.org/debian trixie/main arm64 graphicsmagick arm64 1.4+really1.3.45-1+b2 [1080 kB]
Get: 155 http://deb.debian.org/debian trixie/main arm64 graphicsmagick-imagemagick-compat all 1.4+really1.3.45-1 [22.1 kB]
Get: 156 http://deb.debian.org/debian trixie/main arm64 libapache-pom-java all 33-2 [5852 B]
Get: 157 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 158 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 159 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 160 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB]
Get: 161 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 162 http://deb.debian.org/debian trixie/main arm64 libcommons-parent-java all 56-1 [10.8 kB]
Get: 163 http://deb.debian.org/debian trixie/main arm64 libcommons-logging-java all 1.3.0-1 [68.6 kB]
Get: 164 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB]
Get: 165 http://deb.debian.org/debian trixie/main arm64 libfontbox-java all 1:1.8.16-5 [211 kB]
Get: 166 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB]
Get: 167 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 168 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB]
Get: 169 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 170 http://deb.debian.org/debian trixie/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get: 171 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 172 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB]
Get: 173 http://deb.debian.org/debian trixie/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5+b1 [154 kB]
Get: 174 http://deb.debian.org/debian trixie/main arm64 libmpfi0 arm64 1.5.4+ds-4 [34.5 kB]
Get: 175 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 2.2.5-0.3 [16.1 kB]
Get: 176 http://deb.debian.org/debian trixie/main arm64 libpdfbox-java all 1:1.8.16-5 [5527 kB]
Get: 177 http://deb.debian.org/debian trixie/main arm64 libpotrace0 arm64 1.16-2+b2 [23.4 kB]
Get: 178 http://deb.debian.org/debian trixie/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5+b1 [48.2 kB]
Get: 179 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.1-3+b1 [1970 kB]
Get: 180 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 181 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.1-3+b1 [4682 kB]
Get: 182 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.13.1-2 [10.2 kB]
Get: 183 http://deb.debian.org/debian trixie/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5+b1 [60.6 kB]
Get: 184 http://deb.debian.org/debian trixie/main arm64 libteckit0 arm64 2.5.12+ds1-1+b1 [303 kB]
Get: 185 http://deb.debian.org/debian trixie/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5+b1 [106 kB]
Get: 186 http://deb.debian.org/debian trixie/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB]
Get: 187 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b3 [53.4 kB]
Get: 188 http://deb.debian.org/debian trixie/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB]
Get: 189 http://deb.debian.org/debian trixie/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB]
Get: 190 http://deb.debian.org/debian trixie/main arm64 libzzip-0-13t64 arm64 0.13.72+dfsg.1-1.2+b1 [56.7 kB]
Get: 191 http://deb.debian.org/debian trixie/main arm64 tex-common all 6.18 [32.5 kB]
Get: 192 http://deb.debian.org/debian trixie/main arm64 preview-latex-style all 13.2-1 [350 kB]
Get: 193 http://deb.debian.org/debian trixie/main arm64 python3-cffi-backend arm64 1.17.1-2+b1 [94.8 kB]
Get: 194 http://deb.debian.org/debian trixie/main arm64 python3-ply all 3.11-7 [62.6 kB]
Get: 195 http://deb.debian.org/debian trixie/main arm64 python3-pycparser all 2.22-2 [78.0 kB]
Get: 196 http://deb.debian.org/debian trixie/main arm64 python3-cffi all 1.17.1-2 [89.4 kB]
Get: 197 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.1-3+b1 [504 kB]
Get: 198 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.13.1-2 [26.1 kB]
Get: 199 http://deb.debian.org/debian trixie/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB]
Get: 200 http://deb.debian.org/debian trixie/main arm64 texlive-binaries arm64 2024.20240313.70630+ds-5+b1 [7357 kB]
Get: 201 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 202 http://deb.debian.org/debian trixie/main arm64 texlive-base all 2024.20241115-1 [22.7 MB]
Get: 203 http://deb.debian.org/debian trixie/main arm64 texlive-font-utils all 2024.20241115-1 [6980 kB]
Get: 204 http://deb.debian.org/debian trixie/main arm64 texlive-fonts-recommended all 2024.20241115-1 [4991 kB]
Get: 205 http://deb.debian.org/debian trixie/main arm64 texlive-latex-base all 2024.20241115-1 [1278 kB]
Get: 206 http://deb.debian.org/debian trixie/main arm64 texlive-latex-recommended all 2024.20241115-1 [8757 kB]
Get: 207 http://deb.debian.org/debian trixie/main arm64 texlive-pictures all 2024.20241115-1 [17.0 MB]
Get: 208 http://deb.debian.org/debian trixie/main arm64 texlive-latex-extra all 2024.20241115-1 [24.6 MB]
Get: 209 http://deb.debian.org/debian trixie/main arm64 texlive-plain-generic all 2024.20241115-1 [28.6 MB]
Fetched 282 MB in 1s (240 MB/s)
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Setting up libpython3.13-minimal:arm64 (3.13.1-3+b1) ...
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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No schema files found: doing nothing.
Setting up libptexenc1:arm64 (2024.20240313.70630+ds-5+b1) ...
Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ...
Setting up libopenexr-3-1-30:arm64 (3.1.5-5.1+b4) ...
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Setting up libclang-cpp19 (1:19.1.6-1+b1) ...
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Setting up python3 (3.13.1-2) ...
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Setting up python3-autocommand (2.2.2-3) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:arm64 (1.18.2-2) ...
Setting up tex-common (6.18) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up doxygen (1.9.8+ds-2+b3) ...
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
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Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
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Setting up python3.13-dev (3.13.1-3+b1) ...
Setting up preview-latex-style (13.2-1) ...
Setting up python3-ply (3.11-7) ...
Setting up python3-typeguard (4.4.1-1) ...
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Setting up fonts-urw-base35 (20200910-8) ...
Setting up python3-pycparser (2.22-2) ...
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Setting up python3-dev (3.13.1-2) ...
Setting up texlive-binaries (2024.20240313.70630+ds-5+b1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up cmake (3.31.5-1) ...
Setting up texlive-base (2024.20241115-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
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Setting up libheif-plugin-dav1d:arm64 (1.19.5-1+b1) ...
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Setting up libgraphicsmagick-q16-3t64 (1.4+really1.3.45-1+b2) ...
Setting up graphicsmagick (1.4+really1.3.45-1+b2) ...
Setting up graphicsmagick-imagemagick-compat (1.4+really1.3.45-1) ...
Processing triggers for libc-bin (2.40-6) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.37-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/reproducible-path/isospec-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../isospec_2.2.1-4.1_source.changes
dpkg-buildpackage: info: source package isospec
dpkg-buildpackage: info: source version 2.2.1-4.1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Lukas Märdian <slyon@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dpkg-query: no packages found matching r-base-dev
dpkg-query: no packages found matching r-base-core
dh clean --with python3
dh_auto_clean
make -j12 clean
make[1]: Entering directory '/build/reproducible-path/isospec-2.2.1'
rm -rf IsoSpecPy.egg-info build dist
make[1]: Leaving directory '/build/reproducible-path/isospec-2.2.1'
debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/isospec-2.2.1'
dpkg-query: no packages found matching r-base-dev
dpkg-query: no packages found matching r-base-core
rm -rf obj-x86_64-linux-gnu
rm -rf build
rm -f compile_commands.json
rm -rf .pc
rm -rf IsoSpecPy.egg-info
# The setup.py script immediately creates that link which
# makes the package building to stop because it finds that
# the source tree has changed. So, first remove that link,
# that we'll recreate when we need it later, in the
# override_dh_auto_build target.
rm -rf IsoSpecPy/IsoSpec++
rm -rf .pybuild/
rm -rf tmp-install/
rm -rf IsoSpec++/IsoSpec++
rm -rf IsoSpecPy/build/
rm -rf man/html/
rm -rf man/latex/
rm -rf man/man/
# Now the default target
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars debian/files
rm -fr -- debian/libisospec\+\+-dev/ debian/tmp/ debian/libisospec\+\+2t64/ debian/python3-isospec/ debian/libisospec\+\+-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
make[1]: Leaving directory '/build/reproducible-path/isospec-2.2.1'
debian/rules binary
dpkg-query: no packages found matching r-base-dev
dpkg-query: no packages found matching r-base-core
dh binary --with python3
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/isospec-2.2.1'
dpkg-query: no packages found matching r-base-dev
dpkg-query: no packages found matching r-base-core
dh_auto_configure -O--buildsystem=cmake -- \
-DCMAKE_INSTALL_PREFIX=/usr \
-DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
[1;31mConfiguring build for project IsoSpec[m
-- [1;32mCMAKE_CXX_COMPILER: /usr/bin/c++[m
-- [1;32mSetting definition -Wno-unknown-pragmas.[m
-- [1;32mSetting definition -Wall.[m
-- [1;32mSetting definition -Wextra.[m
-- [1;32mSetting definition -pedantic.[m
-- [1;32mCMAKE_SOURCE_DIR: /build/reproducible-path/isospec-2.2.1[m
-- [1;32mCMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu[m
[1;31mUNIX non APPLE environment[m
~~~~~~ Instructions ~~~~~~
On UNIX/GNU-Linux, please run the configuration like this:
cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=<Debug | Release> -DCMAKE_INSTALL_PREFIX=</usr | your_dir> ../development
-- [1;32mStarting configuration for the doc material for IsoSpec [m
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
-- [1;32mFinished configuration of the doc material.[m
-- [1;32mStarting configuration for the example material for IsoSpec [m
-- [1;32mFinished configuration for the example material.[m
[1;31mThe build toolchain is: Linux
[m
-- [1;33mCMAKE_BUILD_TYPE: None.[m
-- [1;33mCMAKE_INSTALL_PREFIX: /usr.[m
[1;31m"Now configuring IsoSpec++/ for IsoSpec"[m
-- Configuring done (1.7s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu
dh_auto_configure -O--buildsystem=cmake -- \
-DCMAKE_INSTALL_PREFIX=/usr \
-DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 ..
[1;31mConfiguring build for project IsoSpec[m
-- [1;32mCMAKE_CXX_COMPILER: /usr/bin/c++[m
-- [1;32mSetting definition -Wno-unknown-pragmas.[m
-- [1;32mSetting definition -Wall.[m
-- [1;32mSetting definition -Wextra.[m
-- [1;32mSetting definition -pedantic.[m
-- [1;32mCMAKE_SOURCE_DIR: /build/reproducible-path/isospec-2.2.1[m
-- [1;32mCMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu[m
[1;31mUNIX non APPLE environment[m
~~~~~~ Instructions ~~~~~~
On UNIX/GNU-Linux, please run the configuration like this:
cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=<Debug | Release> -DCMAKE_INSTALL_PREFIX=</usr | your_dir> ../development
-- [1;32mStarting configuration for the doc material for IsoSpec [m
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
-- [1;32mFinished configuration of the doc material.[m
-- [1;32mStarting configuration for the example material for IsoSpec [m
-- [1;32mFinished configuration for the example material.[m
[1;31mThe build toolchain is: Linux
[m
-- [1;33mCMAKE_BUILD_TYPE: None.[m
-- [1;33mCMAKE_INSTALL_PREFIX: /usr.[m
[1;31m"Now configuring IsoSpec++/ for IsoSpec"[m
-- Configuring done (0.6s)
-- Generating done (0.0s)
-- Build files have been written to: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu
dh_auto_configure -O--buildsystem=pybuild -O--system=distutils --sourcedirectory=.
pybuild --configure -i python{version} -p 3.13
I: pybuild base:311: python3.13 setup.py config
running config
dh override_dh_auto_configure --with python3
make[1]: Leaving directory '/build/reproducible-path/isospec-2.2.1'
rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/isospec-2.2.1'
dpkg-query: no packages found matching r-base-dev
dpkg-query: no packages found matching r-base-core
dh_auto_configure -O--buildsystem=pybuild -O--system=distutils --sourcedirectory=.
pybuild --configure -i python{version} -p 3.13
I: pybuild base:311: python3.13 setup.py config
running config
dh_auto_build -O--buildsystem=cmake -O--system=distutils --sourcedirectory=.
cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/isospec-2.2.1 -B/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend
make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.2.1 /build/reproducible-path/isospec-2.2.1/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.2.1 /build/reproducible-path/isospec-2.2.1/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
[ 25%] Building CXX object IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o
[ 50%] Building CXX object IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ -I/build/reproducible-path/isospec-2.2.1/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -MD -MT IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ && /usr/bin/c++ -I/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ -I/build/reproducible-path/isospec-2.2.1/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -pedantic -MD -MT IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp
In file included from /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp:30:
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’:
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size]
53 | isotopeNumbers(new int[0]),
| ^
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp:54:21: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size]
54 | atomCounts(new int[0]),
| ^
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size]
57 | marginals(new Marginal*[0])
| ^
In file included from /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp:30:
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’:
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size]
53 | isotopeNumbers(new int[0]),
| ^
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp:54:21: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size]
54 | atomCounts(new int[0]),
| ^
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size]
57 | marginals(new Marginal*[0])
| ^
In file included from /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp:37:
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp: In lambda function:
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp:427:31: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
427 | auto next = [&]() -> std::pair<double, double> {
| ^~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp:37:
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp: In lambda function:
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp:427:31: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
427 | auto next = [&]() -> std::pair<double, double> {
| ^~~~~~~~~~~~~~~~~~~~
[ 75%] Linking CXX shared library libIsoSpec++.so
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/IsoSpec++-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.2.1 "CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o"
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.2.1 libIsoSpec++.so.2 libIsoSpec++.so
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dh_auto_configure -O--buildsystem=cmake -- \
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-DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 ..
[1;31mConfiguring build for project IsoSpec[m
-- [1;32mCMAKE_CXX_COMPILER: /usr/bin/c++[m
-- [1;32mSetting definition -Wno-unknown-pragmas.[m
-- [1;32mSetting definition -Wall.[m
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-- [1;32mCMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu[m
[1;31mUNIX non APPLE environment[m
~~~~~~ Instructions ~~~~~~
On UNIX/GNU-Linux, please run the configuration like this:
cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=<Debug | Release> -DCMAKE_INSTALL_PREFIX=</usr | your_dir> ../development
-- [1;32mStarting configuration for the doc material for IsoSpec [m
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
-- [1;32mFinished configuration of the doc material.[m
-- [1;32mStarting configuration for the example material for IsoSpec [m
-- [1;32mFinished configuration for the example material.[m
[1;31mThe build toolchain is: Linux
[m
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-- [1;33mCMAKE_INSTALL_PREFIX: /usr.[m
[1;31m"Now configuring IsoSpec++/ for IsoSpec"[m
-- Configuring done (0.7s)
-- Generating done (0.0s)
-- Build files have been written to: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu
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Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal".
Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/compiler_depend.internal".
Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/link.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal".
Consolidate compiler generated dependencies of target IsoSpec++-static
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dh_auto_configure -O--buildsystem=cmake -- \
-DCMAKE_INSTALL_PREFIX=/usr \
-DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 ..
[1;31mConfiguring build for project IsoSpec[m
-- [1;32mCMAKE_CXX_COMPILER: /usr/bin/c++[m
-- [1;32mSetting definition -Wno-unknown-pragmas.[m
-- [1;32mSetting definition -Wall.[m
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-- [1;32mCMAKE_SOURCE_DIR: /build/reproducible-path/isospec-2.2.1[m
-- [1;32mCMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu[m
[1;31mUNIX non APPLE environment[m
~~~~~~ Instructions ~~~~~~
On UNIX/GNU-Linux, please run the configuration like this:
cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=<Debug | Release> -DCMAKE_INSTALL_PREFIX=</usr | your_dir> ../development
-- [1;32mStarting configuration for the doc material for IsoSpec [m
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
-- [1;32mFinished configuration of the doc material.[m
-- [1;32mStarting configuration for the example material for IsoSpec [m
-- [1;32mFinished configuration for the example material.[m
[1;31mThe build toolchain is: Linux
[m
-- [1;33mCMAKE_BUILD_TYPE: None.[m
-- [1;33mCMAKE_INSTALL_PREFIX: /usr.[m
[1;31m"Now configuring IsoSpec++/ for IsoSpec"[m
-- Configuring done (0.6s)
-- Generating done (0.0s)
-- Build files have been written to: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu
# Generate the dev-doc in the man/hml and man/latex directories
#doxygen man/doxyfile
dh_auto_build -O--buildsyste=cmake -- html_doc
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/usr/bin/cmake -S/build/reproducible-path/isospec-2.2.1 -B/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
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warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete.
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Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/mman.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/mman.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/mman.h...
Parsing file /build//build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:40: warning: Compound IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:439: warning: Compound IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:542: warning: Compound IsoSpec::IsoStochasticGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:32: warning: Compound pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h:146: warning: Compound ws_match_res is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command
reproducible-path/isospec-2.2.1/IsoSpec++/mman.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform_incl.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform_incl.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/python-build.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/python-build.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Building concept list...
Computing nesting relations for classes...
Associating documentation with classes...
Associating documentation with concepts...
Associating documentation with modules...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Computing module relations...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp...
Gene/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:194: warning: Member iterator (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:195: warning: Member const_iterator (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:196: warning: Member value_type (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:197: warning: Member size_type (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:198: warning: Member reference (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:199: warning: Member const_reference (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:39: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:54: warning: Member operator=(pod_vector< T > &&other) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:64: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:74: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:82: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:94: warning: Member reserve(size_t n) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:100: warning: Member resize(size_t new_size) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:114: warning: Member resize_and_wipe(size_t new_size) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:122: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:129: warning: Member push_back(const T &val) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:137: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:143: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:149: warning: Member size() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:154: warning: Member capacity() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:159: warning: Member data() noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:164: warning: Member data() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:169: warning: Member empty() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:174: warning: Member back() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:180: warning: Member pop_back() noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:187: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:201: warning: Member begin() noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:202: warning: Member begin() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:203: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:204: warning: Member end() noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:205: warning: Member end() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:206: warning: Member cend() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:208: warning: Member front() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:214: warning: Member clear() (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:372: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:373: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:374: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:375: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:376: warning: Member reference (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:377: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:234: warning: Member init() (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:242: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:261: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:272: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:278: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:292: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:300: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:307: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:315: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:321: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:327: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:332: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:337: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:342: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:347: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:352: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:358: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:365: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:379: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:380: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:381: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:382: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:383: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:384: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:386: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:392: warning: Member clear() (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h:147: warning: Member res1 (variable) of struct ws_match_res is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h:148: warning: Member res2 (variable) of struct ws_match_res is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h:149: warning: Member flow (variable) of struct ws_match_res is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.h:33: warning: Member parse_fasta(const char *fasta, int atomCounts[6]) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp:134: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:37: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:150: warning: Member random_gen(random_dev()) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:151: warning: Member stdunif(0.0, 1.0) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:153: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, int n, int start, int end) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, int size, const char *prefix="") (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:99: warning: Member printOffsets(const T **array, int size, const T *offset, const char *prefix="") (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:108: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:133: warning: Member dealloc_table(T *tbl, int dim) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:142: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:151: warning: Member get_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:162: warning: Member get_inverse_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:173: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:149: warning: Member random_dev (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp:53: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented:
parameter 'isotopeNo'
parameter 'lprobs'
parameter 'res'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:70: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:71: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:73: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:82: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:83: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:86: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:88: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:89: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:90: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:92: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:93: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:94: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:95: warning: Member release_everything() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:98: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:99: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:100: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:102: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:103: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:105: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:106: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:107: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:108: warning: Member shift_mass(double shift) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:109: warning: Member resample(size_t ionic_current, double beta_bias=1.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:111: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:112: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:113: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:115: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:116: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:117: warning: Member AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:118: warning: Member WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:125: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:170: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:172: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:181: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:216: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:121: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:122: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:194: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:199: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:211: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:218: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:230: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:235: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:236: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:132: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:139: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:152: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:166: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:167: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:42: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:43: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:44: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:45: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:46: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:47: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:48: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:49: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:50: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:51: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:52: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:53: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:54: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:241: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (friend) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:110: warning: Found unknown command '\use_nominal_masses'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\add_water'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:106: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented:
parameter 'use_nominal_masses'
parameter 'add_water'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:483: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:485: warning: Member IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:499: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:534: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:553: warning: Member IsoStochasticGenerator(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0) (function) of class IsoSpec::IsoStochasticGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:555: warning: Member count() const (function) of class IsoSpec::IsoStochasticGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:339: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true)
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:339: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true)
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:339: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented:
parameter '_tabSize'
parameter '_hashSize'
parameter 'reorder_marginals'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:368: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented:
parameter 'm'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:378: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented:
parameter 'do_sort'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:59: warning: found documented return type for IsoSpec::Marginal::Marginal that does not return anything
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:233: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:234: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:235: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:199: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented:
parameter 'm'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:146: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:254: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:255: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:256: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:257: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:258: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:259: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:260: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:264: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000)
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:264: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented:
parameter 'm'
parameter 'tabSize'
parameter 'hashSize'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:264: warning: found documented return type for IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal that does not return anything
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:129: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented.
rating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/mman.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/mman.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform_incl.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/python-build.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp...
Generating file documentation...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating docs for compound pod_vector...
Generating docs for compound unsafe_pod_vector...
Generating docs for compound ws_match_res...
Generating concept documentation...
Generating module documentation...
Generating namespace documentation...
Generating docs for namespace IsoSpec
Generating docs for compound IsoSpec::Allocator...
Generating docs for compound IsoSpec::ConfEqual...
Generating docs for compound IsoSpec::ConfOrder...
Generating docs for compound IsoSpec::ConfOrderMarginal...
Generating docs for compound IsoSpec::ConfOrderMarginalDescending...
Generating docs for compound IsoSpec::DirtyAllocator...
Generating docs for compound IsoSpec::FixedEnvelope...
Generating docs for compound IsoSpec::Iso...
Generating docs for compound IsoSpec::IsoGenerator...
Generating docs for compound IsoSpec::IsoLayeredGenerator...
Generating docs for compound IsoSpec::IsoOrderedGenerator...
Generating docs for compound IsoSpec::IsoStochasticGenerator...
Generating docs for compound IsoSpec::IsoThresholdGenerator...
Generating docs for compound IsoSpec::KeyHasher...
Generating docs for compound IsoSpec::LayeredMarginal...
Generating docs for compound IsoSpec::Marginal...
Generating docs for compound IsoSpec::MarginalTrek...
Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing...
Generating docs for compound IsoSpec::PrecalculatedMarginal...
Generating docs for compound IsoSpec::ProbAndConfPtr...
Generating docs for compound IsoSpec::ReverseOrder...
Generating docs for compound IsoSpec::SSummator...
Generating docs for compound IsoSpec::Summator...
Generating docs for compound IsoSpec::TableOrder...
Generating docs for compound IsoSpec::TSummator...
Generating graph info page...
Generating directory documentation...
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Generating module index...
Generating module member index...
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Generating alphabetical compound index...
Generating hierarchical class index...
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Generating file member index...
Generating example index...
finalizing index lists...
writing tag file...
Running plantuml with JAVA...
type lookup cache used 3025/65536 hits=16502 misses=3117
symbol lookup cache used 2874/65536 hits=21953 misses=2874
finished...
make[5]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
[100%] Built target html_doc
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/CMakeFiles 0
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Chapter 1.
(./namespaces.tex
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Chapter 2.
(./hierarchy.tex
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page 3 undefined on input line 8.
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ed on input line 9.
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ndefined on input line 15.
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ndefined on input line 16.
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fined on input line 36.
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[3]
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Chapter 3.
(./annotated.tex
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line 10.
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5 undefined on input line 14.
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Chapter 4.
(./files.tex
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Chapter 5.
(./namespace_iso_spec.tex
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\T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[]
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Chapter 6.
(./class_iso_spec_1_1_allocator.tex
[23]) (./class_iso_spec_1_1_conf_equal.tex
[24]) (./class_iso_spec_1_1_conf_order.tex)
(./class_iso_spec_1_1_conf_order_marginal.tex
[25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex
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[27]) (./class_iso_spec_1_1_fixed_envelope.tex
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[]\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo
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or.pdf>
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Chapter 1.
(./namespaces.tex)
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Chapter 2.
(./hierarchy.tex)
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Chapter 3.
(./annotated.tex)
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Chapter 4.
(./files.tex)
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Chapter 5.
(./namespace_iso_spec.tex
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[]\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647
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\T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[]
_[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][
]
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\T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351
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)
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Chapter 6.
(./class_iso_spec_1_1_allocator.tex
[23]) (./class_iso_spec_1_1_conf_equal.tex
[24]) (./class_iso_spec_1_1_conf_order.tex)
(./class_iso_spec_1_1_conf_order_marginal.tex
[25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex
[26]) (./class_iso_spec_1_1_dirty_allocator.tex
[27]) (./class_iso_spec_1_1_fixed_envelope.tex
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[39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf>
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[47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_generat
or.pdf>
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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso
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\T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered
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\T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer
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[71]) (./class_iso_spec_1_1_key_hasher.tex)
(./class_iso_spec_1_1_layered_marginal.tex
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[104]) (./class_iso_spec_1_1_s_summator.tex
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Chapter 7.
(./allocator_8cpp_source.tex) (./allocator_8h_source.tex
[117]) (./btrd_8h_source.tex
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Chapter 1.
(./namespaces.tex)
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Chapter 2.
(./hierarchy.tex)
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Chapter 3.
(./annotated.tex)
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Chapter 4.
(./files.tex)
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Chapter 5.
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[]\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647
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\T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[]
_[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][
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\T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351
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)
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Chapter 6.
(./class_iso_spec_1_1_allocator.tex
[23]) (./class_iso_spec_1_1_conf_equal.tex
[24]) (./class_iso_spec_1_1_conf_order.tex)
(./class_iso_spec_1_1_conf_order_marginal.tex
[25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex
[26]) (./class_iso_spec_1_1_dirty_allocator.tex
[27]) (./class_iso_spec_1_1_fixed_envelope.tex
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[]\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo
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[39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf>
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[47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_generat
or.pdf>
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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso
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\T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered
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\T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer
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\T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer
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) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t
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[71]) (./class_iso_spec_1_1_key_hasher.tex)
(./class_iso_spec_1_1_layered_marginal.tex
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[103]) (./class_iso_spec_1_1_reverse_order.tex
[104]) (./class_iso_spec_1_1_s_summator.tex
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Chapter 7.
(./allocator_8cpp_source.tex) (./allocator_8h_source.tex
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\T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[]
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# Recreate the symlink that was created by setup.py
# and that we had to remove at the override_dh_clean target.
ln -sf IsoSpec++ IsoSpecPy/IsoSpec++
make[1]: Leaving directory '/build/reproducible-path/isospec-2.2.1'
dh_auto_test
rm -fr -- /tmp/dh-xdg-rundir-z9NIEIX8
create-stamp debian/debhelper-build-stamp
dh_prep
rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars
rm -fr -- debian/.debhelper/generated/libisospec\+\+-dev/ debian/libisospec\+\+-dev/ debian/tmp/ debian/.debhelper/generated/libisospec\+\+2t64/ debian/libisospec\+\+2t64/ debian/.debhelper/generated/python3-isospec/ debian/python3-isospec/ debian/.debhelper/generated/libisospec\+\+-doc/ debian/libisospec\+\+-doc/
rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/isospec-2.2.1'
dpkg-query: no packages found matching r-base-dev
dpkg-query: no packages found matching r-base-core
dh_auto_configure -O--buildsystem=pybuild -O--system=distutils --sourcedirectory=.
pybuild --configure -i python{version} -p 3.13
I: pybuild base:311: python3.13 setup.py config
running config
dh_auto_build -O--buildsystem=cmake -O--system=distutils --sourcedirectory=.
cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/isospec-2.2.1 -B/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.2.1 /build/reproducible-path/isospec-2.2.1/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color="
make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.2.1 /build/reproducible-path/isospec-2.2.1/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color="
Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/compiler_depend.internal".
Consolidate compiler generated dependencies of target IsoSpec++-static
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal".
Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/link.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal".
Consolidate compiler generated dependencies of target IsoSpec++-shared
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
[ 50%] Built target IsoSpec++-static
[100%] Built target IsoSpec++-shared
make[3]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/CMakeFiles 0
make[2]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
dh_auto_configure -O--buildsystem=cmake -- \
-DCMAKE_INSTALL_PREFIX=/usr \
-DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 ..
[1;31mConfiguring build for project IsoSpec[m
-- [1;32mCMAKE_CXX_COMPILER: /usr/bin/c++[m
-- [1;32mSetting definition -Wno-unknown-pragmas.[m
-- [1;32mSetting definition -Wall.[m
-- [1;32mSetting definition -Wextra.[m
-- [1;32mSetting definition -pedantic.[m
-- [1;32mCMAKE_SOURCE_DIR: /build/reproducible-path/isospec-2.2.1[m
-- [1;32mCMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu[m
[1;31mUNIX non APPLE environment[m
~~~~~~ Instructions ~~~~~~
On UNIX/GNU-Linux, please run the configuration like this:
cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=<Debug | Release> -DCMAKE_INSTALL_PREFIX=</usr | your_dir> ../development
-- [1;32mStarting configuration for the doc material for IsoSpec [m
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
-- [1;32mFinished configuration of the doc material.[m
-- [1;32mStarting configuration for the example material for IsoSpec [m
-- [1;32mFinished configuration for the example material.[m
[1;31mThe build toolchain is: Linux
[m
-- [1;33mCMAKE_BUILD_TYPE: None.[m
-- [1;33mCMAKE_INSTALL_PREFIX: /usr.[m
[1;31m"Now configuring IsoSpec++/ for IsoSpec"[m
-- Configuring done (0.6s)
-- Generating done (0.0s)
-- Build files have been written to: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu
dh_auto_build -O--buildsystem=cmake
cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/isospec-2.2.1 -B/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.2.1 /build/reproducible-path/isospec-2.2.1/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color="
make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.2.1 /build/reproducible-path/isospec-2.2.1/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++ /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color="
Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal".
Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/link.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal".
Consolidate compiler generated dependencies of target IsoSpec++-shared
Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d" is newer than depends file "/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/compiler_depend.internal".
Consolidate compiler generated dependencies of target IsoSpec++-static
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
[ 50%] Built target IsoSpec++-static
[100%] Built target IsoSpec++-shared
make[3]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/CMakeFiles 0
make[2]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
dh_auto_configure -O--buildsystem=cmake -- \
-DCMAKE_INSTALL_PREFIX=/usr \
-DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 ..
[1;31mConfiguring build for project IsoSpec[m
-- [1;32mCMAKE_CXX_COMPILER: /usr/bin/c++[m
-- [1;32mSetting definition -Wno-unknown-pragmas.[m
-- [1;32mSetting definition -Wall.[m
-- [1;32mSetting definition -Wextra.[m
-- [1;32mSetting definition -pedantic.[m
-- [1;32mCMAKE_SOURCE_DIR: /build/reproducible-path/isospec-2.2.1[m
-- [1;32mCMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu[m
[1;31mUNIX non APPLE environment[m
~~~~~~ Instructions ~~~~~~
On UNIX/GNU-Linux, please run the configuration like this:
cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=<Debug | Release> -DCMAKE_INSTALL_PREFIX=</usr | your_dir> ../development
-- [1;32mStarting configuration for the doc material for IsoSpec [m
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).
-- [1;32mFinished configuration of the doc material.[m
-- [1;32mStarting configuration for the example material for IsoSpec [m
-- [1;32mFinished configuration for the example material.[m
[1;31mThe build toolchain is: Linux
[m
-- [1;33mCMAKE_BUILD_TYPE: None.[m
-- [1;33mCMAKE_INSTALL_PREFIX: /usr.[m
[1;31m"Now configuring IsoSpec++/ for IsoSpec"[m
-- Configuring done (0.7s)
-- Generating done (0.0s)
-- Build files have been written to: /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu
# Generate the dev-doc in the man/hml and man/latex directories
#doxygen man/doxyfile
dh_auto_build -O--buildsyste=cmake -- html_doc
cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" html_doc VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/isospec-2.2.1 -B/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 html_doc
make[3]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/isospec-2.2.1 -B/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/CMakeFiles 1
make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all
make[4]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend
make[5]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
cd /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.2.1 /build/reproducible-path/isospec-2.2.1/man /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/man /build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build
make[5]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
[100%] Doxygen-based developer html documentation generation
cd /build/reproducible-path/isospec-2.2.1/man && doxygen doxyfile
warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile
warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'HTML_TIMESTAMP' at line 1256 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'FORMULA_TRANSPARENT' at line 1545 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'LATEX_SOURCE_CODE' at line 1833 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'LATEX_TIMESTAMP' at line 1849 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'RTF_SOURCE_CODE' at line 1915 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2013 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'CLASS_DIAGRAMS' at line 2206 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTNAME' at line 2257 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTSIZE' at line 2264 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_TRANSPARENT' at line 2488 of file 'doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
Doxygen version used: 1.9.8
Searching for include files...
Searching for example files...
Searching for images...
Searching for dot files...
Searching for msc files...
Searching for dia files...
Searching for files to exclude
Searching INPUT for files to process...
Searching for files in directory /build/reproducible-path/isospec-2.2.1/IsoSpec++
Reading and parsing tag files
Parsing files
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/mman.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/mman.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/mman.h...
Parsing file /build//build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:40: warning: Compound IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:439: warning: Compound IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:542: warning: Compound IsoSpec::IsoStochasticGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:32: warning: Compound pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h:146: warning: Compound ws_match_res is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command
reproducible-path/isospec-2.2.1/IsoSpec++/mman.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform_incl.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/platform_incl.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/python-build.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/python-build.cpp...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h...
Preprocessing /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp...
Parsing file /build/reproducible-path/isospec-2.2.1/IsoSpec++/unity-build.cpp...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Building concept list...
Computing nesting relations for classes...
Associating documentation with classes...
Associating documentation with concepts...
Associating documentation with modules...
Building example list...
Searching for enumerations...
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Searching for members imported via using declarations...
Searching for included using directives...
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Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Computing module relations...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp...
Gene/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:194: warning: Member iterator (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:195: warning: Member const_iterator (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:196: warning: Member value_type (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:197: warning: Member size_type (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:198: warning: Member reference (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:199: warning: Member const_reference (typedef) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:39: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:54: warning: Member operator=(pod_vector< T > &&other) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:64: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:74: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:82: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:94: warning: Member reserve(size_t n) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:100: warning: Member resize(size_t new_size) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:114: warning: Member resize_and_wipe(size_t new_size) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:122: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:129: warning: Member push_back(const T &val) (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:137: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:143: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:149: warning: Member size() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:154: warning: Member capacity() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:159: warning: Member data() noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:164: warning: Member data() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:169: warning: Member empty() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:174: warning: Member back() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:180: warning: Member pop_back() noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:187: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:201: warning: Member begin() noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:202: warning: Member begin() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:203: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:204: warning: Member end() noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:205: warning: Member end() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:206: warning: Member cend() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:208: warning: Member front() const noexcept (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:214: warning: Member clear() (function) of class pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:372: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:373: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:374: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:375: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:376: warning: Member reference (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:377: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:234: warning: Member init() (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:242: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:261: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:272: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:278: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:292: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:300: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:307: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:315: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:321: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:327: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:332: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:337: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:342: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:347: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:352: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:358: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:365: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:379: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:380: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:381: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:382: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:383: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:384: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:386: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/pod_vector.h:392: warning: Member clear() (function) of class unsafe_pod_vector is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h:147: warning: Member res1 (variable) of struct ws_match_res is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h:148: warning: Member res2 (variable) of struct ws_match_res is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/cwrapper.h:149: warning: Member flow (variable) of struct ws_match_res is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.h:33: warning: Member parse_fasta(const char *fasta, int atomCounts[6]) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.cpp:134: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:37: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:150: warning: Member random_gen(random_dev()) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:151: warning: Member stdunif(0.0, 1.0) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:153: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, int n, int start, int end) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, int size, const char *prefix="") (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:99: warning: Member printOffsets(const T **array, int size, const T *offset, const char *prefix="") (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:108: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:133: warning: Member dealloc_table(T *tbl, int dim) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:142: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:151: warning: Member get_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:162: warning: Member get_inverse_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/misc.h:173: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.cpp:149: warning: Member random_dev (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of namespace IsoSpec is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.cpp:53: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented:
parameter 'isotopeNo'
parameter 'lprobs'
parameter 'res'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:70: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:71: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:73: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:82: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:83: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:86: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:88: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:89: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:90: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:92: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:93: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:94: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:95: warning: Member release_everything() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:98: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:99: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:100: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:102: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:103: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:105: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:106: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:107: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:108: warning: Member shift_mass(double shift) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:109: warning: Member resample(size_t ionic_current, double beta_bias=1.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:111: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:112: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:113: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:115: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:116: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:117: warning: Member AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:118: warning: Member WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:125: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:170: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:172: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:181: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:216: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:121: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:122: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:194: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:199: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:211: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:218: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:230: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:235: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:236: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:132: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:139: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:152: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:166: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:167: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:42: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:43: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:44: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:45: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:46: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:47: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:48: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:49: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:50: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:51: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:52: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:53: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:54: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/fixedEnvelopes.h:241: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (friend) of class IsoSpec::FixedEnvelope is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:110: warning: Found unknown command '\use_nominal_masses'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\add_water'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:106: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented:
parameter 'use_nominal_masses'
parameter 'add_water'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:483: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:485: warning: Member IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:499: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:534: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:553: warning: Member IsoStochasticGenerator(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0) (function) of class IsoSpec::IsoStochasticGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:555: warning: Member count() const (function) of class IsoSpec::IsoStochasticGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:339: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true)
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:339: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true)
/build/reproducible-path/isospec-2.2.1/IsoSpec++/isoSpec++.h:339: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented:
parameter '_tabSize'
parameter '_hashSize'
parameter 'reorder_marginals'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:368: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented:
parameter 'm'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:378: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented:
parameter 'do_sort'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:59: warning: found documented return type for IsoSpec::Marginal::Marginal that does not return anything
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:233: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:234: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:235: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:199: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented:
parameter 'm'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:146: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:254: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:255: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:256: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:257: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:258: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:259: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:260: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:264: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000)
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:264: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented:
parameter 'm'
parameter 'tabSize'
parameter 'hashSize'
/build/reproducible-path/isospec-2.2.1/IsoSpec++/marginalTrek++.h:264: warning: found documented return type for IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal that does not return anything
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/operators.h:129: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented.
/build/reproducible-path/isospec-2.2.1/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented.
rating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/element_tables.h...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.cpp...
Generating code for file /build/reproducible-path/isospec-2.2.1/IsoSpec++/fasta.h...
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Generating file documentation...
Generating page documentation...
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Generating class documentation...
Generating docs for compound pod_vector...
Generating docs for compound unsafe_pod_vector...
Generating docs for compound ws_match_res...
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Generating namespace documentation...
Generating docs for namespace IsoSpec
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Generating docs for compound IsoSpec::Iso...
Generating docs for compound IsoSpec::IsoGenerator...
Generating docs for compound IsoSpec::IsoLayeredGenerator...
Generating docs for compound IsoSpec::IsoOrderedGenerator...
Generating docs for compound IsoSpec::IsoStochasticGenerator...
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Generating hierarchical class index...
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Generating file index...
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Generating example index...
finalizing index lists...
writing tag file...
Running plantuml with JAVA...
type lookup cache used 3025/65536 hits=16502 misses=3117
symbol lookup cache used 2874/65536 hits=21953 misses=2874
finished...
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pdflatex refman
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[2]
Chapter 1.
(./namespaces.tex
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[2]
Chapter 2.
(./hierarchy.tex
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page 3 undefined on input line 8.
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[3]
[4]
Chapter 3.
(./annotated.tex
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Chapter 6.
(./class_iso_spec_1_1_allocator.tex
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[24]) (./class_iso_spec_1_1_conf_order.tex)
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[25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex
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Chapter 1.
(./namespaces.tex)
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Chapter 2.
(./hierarchy.tex)
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Chapter 3.
(./annotated.tex)
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Chapter 4.
(./files.tex)
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Chapter 5.
(./namespace_iso_spec.tex
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[]\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647
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\T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[]
_[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][
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\T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351
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)
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Chapter 6.
(./class_iso_spec_1_1_allocator.tex
[23]) (./class_iso_spec_1_1_conf_equal.tex
[24]) (./class_iso_spec_1_1_conf_order.tex)
(./class_iso_spec_1_1_conf_order_marginal.tex
[25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex
[26]) (./class_iso_spec_1_1_dirty_allocator.tex
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or.pdf>
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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso
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[71]) (./class_iso_spec_1_1_key_hasher.tex)
(./class_iso_spec_1_1_layered_marginal.tex
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[103]) (./class_iso_spec_1_1_reverse_order.tex
[104]) (./class_iso_spec_1_1_s_summator.tex
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Chapter 7.
(./allocator_8cpp_source.tex) (./allocator_8h_source.tex
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\T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[]
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Chapter 6.
(./class_iso_spec_1_1_allocator.tex
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[24]) (./class_iso_spec_1_1_conf_order.tex)
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[25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex
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[]\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo
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Chapter 1.
(./namespaces.tex)
[1]
[2]
Chapter 2.
(./hierarchy.tex)
[3]
[4]
Chapter 3.
(./annotated.tex)
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Chapter 4.
(./files.tex)
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Chapter 5.
(./namespace_iso_spec.tex
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[]\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647
294812915311571513623071472137769884826079783623270275489708
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\T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[]
_[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][
]
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\T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351
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)
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Chapter 6.
(./class_iso_spec_1_1_allocator.tex
[23]) (./class_iso_spec_1_1_conf_equal.tex
[24]) (./class_iso_spec_1_1_conf_order.tex)
(./class_iso_spec_1_1_conf_order_marginal.tex
[25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex
[26]) (./class_iso_spec_1_1_dirty_allocator.tex
[27]) (./class_iso_spec_1_1_fixed_envelope.tex
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[]\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo
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[39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf>
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[47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_generat
or.pdf>
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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso
_layered_generator.pdf>
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\T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered
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\T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer
ed[]Generator[]::lprob ( ) const [inline], [final],
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\T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer
ed[]Generator[]::mass ( ) const [inline], [final],
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ed[]Generator[]::prob ( ) const [inline], [final],
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) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord
ered_generator.pdf>
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astic[]Generator[]::prob ( ) const [inline], [final],
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) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t
hreshold_generator.pdf>
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[71]) (./class_iso_spec_1_1_key_hasher.tex)
(./class_iso_spec_1_1_layered_marginal.tex
[72] <./class_iso_spec_1_1_layered_marginal.pdf>
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ek.pdf>
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) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex)
(./classpod__vector.tex
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[95]) (./class_iso_spec_1_1_precalculated_marginal.tex <./class_iso_spec_1_1_pr
ecalculated_marginal.pdf>
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[103]) (./class_iso_spec_1_1_reverse_order.tex
[104]) (./class_iso_spec_1_1_s_summator.tex
[105]) (./class_iso_spec_1_1_summator.tex
[106]) (./class_iso_spec_1_1_table_order.tex
[107]) (./class_iso_spec_1_1_t_summator.tex
[108]) (./classunsafe__pod__vector.tex
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Chapter 7.
(./allocator_8cpp_source.tex) (./allocator_8h_source.tex
[117]) (./btrd_8h_source.tex
[118]
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[120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex
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[126]) (./cwrapper_8h_source.tex
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[129]) (./dirty_allocator_8h_source.tex) (./element__tables_8cpp_source.tex
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make[2]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
# sed-based replacement of the cloudflare URL with the MathJax.js file from the
# libjs-mathjax package
sh debian/replace-mathjax-cloudflare-url-local-file.sh
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
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<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
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<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
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<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js"></script>
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# Recreate the symlink that was created by setup.py
# and that we had to remove at the override_dh_clean target.
ln -sf IsoSpec++ IsoSpecPy/IsoSpec++
# Install the Python module
dh_auto_install -O--buildsystem=pybuild -O--system=distutils --sourcedirectory=.
install -m0755 -d /build/reproducible-path/isospec-2.2.1/debian/tmp
pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/isospec-2.2.1/debian/tmp
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/isospec-2.2.1/debian/python3-isospec
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
creating /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/isoFFI.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/confs_passthrough.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/approximations.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/__init__.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/PeriodicTbl.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/IsoSpecPyOld.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/IsoSpecPy.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/Formulas.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/Distributions.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
copying IsoSpecPy/Advanced.py -> /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy
running build_ext
building 'IsoSpecCppPy' extension
creating build/temp.linux-aarch64-cpython-313/IsoSpec++
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c IsoSpec++/python-build.cpp -o build/temp.linux-aarch64-cpython-313/IsoSpec++/python-build.o -O3 -std=c++17
In file included from IsoSpec++/unity-build.cpp:37,
from IsoSpec++/python-build.cpp:23:
IsoSpec++/fixedEnvelopes.cpp: In lambda function:
IsoSpec++/fixedEnvelopes.cpp:427:31: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
427 | auto next = [&]() -> std::pair<double, double> {
| ^~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/IsoSpec++/python-build.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecCppPy.cpython-313-aarch64-linux-gnu.so
running install_lib
creating /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecCppPy.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/Advanced.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/Distributions.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/Formulas.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/IsoSpecPy.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/IsoSpecPyOld.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/PeriodicTbl.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/__init__.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/approximations.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/confs_passthrough.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
copying /build/reproducible-path/isospec-2.2.1/.pybuild/cpython3_3.13_isospec/build/IsoSpecPy/isoFFI.py -> /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/Advanced.py to Advanced.cpython-313.pyc
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/Distributions.py to Distributions.cpython-313.pyc
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/Formulas.py to Formulas.cpython-313.pyc
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/IsoSpecPy.py to IsoSpecPy.cpython-313.pyc
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/IsoSpecPyOld.py to IsoSpecPyOld.cpython-313.pyc
/usr/lib/python3.13/dist-packages/IsoSpecPy/IsoSpecPyOld.py:98: SyntaxWarning: invalid escape sequence '\D'
/usr/lib/python3.13/dist-packages/IsoSpecPy/IsoSpecPyOld.py:99: SyntaxWarning: invalid escape sequence '\d'
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/PeriodicTbl.py to PeriodicTbl.cpython-313.pyc
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/approximations.py to approximations.cpython-313.pyc
/usr/lib/python3.13/dist-packages/IsoSpecPy/approximations.py:38: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/IsoSpecPy/approximations.py:53: SyntaxWarning: invalid escape sequence '\s'
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/confs_passthrough.py to confs_passthrough.cpython-313.pyc
byte-compiling /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy/isoFFI.py to isoFFI.cpython-313.pyc
running install_egg_info
running egg_info
creating IsoSpecPy.egg-info
writing IsoSpecPy.egg-info/PKG-INFO
writing dependency_links to IsoSpecPy.egg-info/dependency_links.txt
writing requirements to IsoSpecPy.egg-info/requires.txt
writing top-level names to IsoSpecPy.egg-info/top_level.txt
writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt'
reading manifest file 'IsoSpecPy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'IsoSpecPy/*.dll'
adding license file 'LICENCE'
writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt'
Copying IsoSpecPy.egg-info to /build/reproducible-path/isospec-2.2.1/debian/python3-isospec/usr/lib/python3.13/dist-packages/IsoSpecPy-2.2.1.egg-info
Skipping SOURCES.txt
running install_scripts
# Install the C++ library
dh_auto_install -O--buildsystem=cmake
install -m0755 -d /build/reproducible-path/isospec-2.2.1/debian/tmp
cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/isospec-2.2.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/isospec-2.2.1 -B/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[3]: Entering directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
make[3]: Nothing to be done for 'preinstall'.
make[3]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/isospec++/FindIsoSpec++.cmake
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/libisospec++.pc
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/images
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/images/logo2_long.pdf
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/images/logo2_high.pdf
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/unity-build_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/summator_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/structws__match__res.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/structws__match__res-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/python-build_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/pod__vector_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/platform__incl_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/platform_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/operators_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/operators_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/namespaces.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/namespacemembers_func.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/namespacemembers.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/namespace_iso_spec.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/mman_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/mman_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/misc_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/misc_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/iso_math_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/iso_math_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/index.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/hierarchy.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/functions_vars.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/functions_func.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/functions.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/files.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/fasta_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/fasta_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/element__tables_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/element__tables_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/dir_a3505bc52982c4b58e8e73ba88673843.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/cwrapper_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/cwrapper_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/conf_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/classpod__vector.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/classpod__vector-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/classes.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator-members.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/btrd_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/annotated.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/allocator_8h_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/allocator_8cpp_source.html
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/menudata.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/splitbard.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/splitbar.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/folderclosedd.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/folderclosed.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/folderopend.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/folderopen.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/docd.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/doc.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/search.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/searchdata.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/variables_6.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/variables_5.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/variables_4.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/variables_3.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/variables_2.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/variables_1.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/variables_0.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_10.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_f.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_e.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_d.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_c.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_b.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_a.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_9.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_8.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_7.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_6.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_5.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_4.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_3.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_2.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_1.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/functions_0.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/namespaces_0.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_e.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_d.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_c.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_b.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_a.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_9.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_8.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_7.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_6.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_5.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_4.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_3.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_2.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_1.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/classes_0.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_13.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_12.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_11.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_10.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_f.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_e.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_d.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_c.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_b.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_a.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_9.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_8.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_7.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_6.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_5.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_4.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_3.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_2.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_1.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/all_0.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/search.css
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/mag_seld.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/mag_sel.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/close.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/mag_d.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/search/mag.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/doxygen.css
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/minusd.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/plusd.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/minus.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/plus.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/nav_g.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/sync_off.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/sync_on.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/open.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/closed.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/doxygen.svg
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/bc_sd.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/bc_s.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/nav_fd.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/nav_f.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/nav_hd.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/nav_h.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tab_sd.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tab_hd.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tab_bd.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tab_ad.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tab_s.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tab_h.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tab_b.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tab_a.png
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/dynsections.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/menu.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/jquery.js
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/html/tabs.css
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/pdf/refman.pdf
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_Iso.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_Summator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/pod_vector.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/unsafe_pod_vector.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/man/man3/ws_match_res.3
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/C++
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/C++/water.cpp
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/C++/COMPILING
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/Python
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/Python/water.py
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/Python/fasta.py
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/R
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/R/water.R
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/lib/aarch64-linux-gnu/libIsoSpec++.so.2.2.1
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/lib/aarch64-linux-gnu/libIsoSpec++.so.2
-- Installing: /build/reproducible-path/isospec-2.2.1/debian/tmp/usr/lib/aarch64-linux-gnu/libIsoSpec++.a
make[2]: Leaving directory '/build/reproducible-path/isospec-2.2.1/obj-aarch64-linux-gnu'
# Now remove the links, that we'll provide using d/*.links
# So that we can use libIsoSpec++.so.* in d/*.install
rm -f debian/tmp/usr/lib/*/libIsoSpec++.so
rm -f debian/tmp/usr/lib/*/libIsoSpec++.so.2
make[1]: Leaving directory '/build/reproducible-path/isospec-2.2.1'
dh_install
install -m0755 -d debian/libisospec\+\+-dev//usr/lib/aarch64-linux-gnu
cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.a debian/libisospec\+\+-dev//usr/lib/aarch64-linux-gnu/
install -m0755 -d debian/libisospec\+\+-dev//usr/lib/aarch64-linux-gnu/cmake
cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/cmake/isospec\+\+ debian/libisospec\+\+-dev//usr/lib/aarch64-linux-gnu/cmake/
install -m0755 -d debian/libisospec\+\+-dev//usr/lib/aarch64-linux-gnu/pkgconfig
cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/libisospec\+\+.pc debian/libisospec\+\+-dev//usr/lib/aarch64-linux-gnu/pkgconfig/
install -m0755 -d debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+
cp --reflink=auto -a ./IsoSpec\+\+/allocator.h ./IsoSpec\+\+/btrd.h ./IsoSpec\+\+/conf.h ./IsoSpec\+\+/cwrapper.h ./IsoSpec\+\+/dirtyAllocator.h ./IsoSpec\+\+/element_tables.h ./IsoSpec\+\+/fasta.h ./IsoSpec\+\+/fixedEnvelopes.h ./IsoSpec\+\+/isoMath.h ./IsoSpec\+\+/isoSpec\+\+.h ./IsoSpec\+\+/marginalTrek\+\+.h ./IsoSpec\+\+/misc.h ./IsoSpec\+\+/mman.h ./IsoSpec\+\+/operators.h ./IsoSpec\+\+/platform.h ./IsoSpec\+\+/platform_incl.h ./IsoSpec\+\+/pod_vector.h ./IsoSpec\+\+/summator.h debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+/
install -m0755 -d debian/libisospec\+\+2t64//usr/lib/aarch64-linux-gnu
cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so.2.2.1 debian/libisospec\+\+2t64//usr/lib/aarch64-linux-gnu/
install -m0755 -d debian/libisospec\+\+-doc//usr/share/doc
cp --reflink=auto -a debian/tmp/usr/share/doc/isospec debian/libisospec\+\+-doc//usr/share/doc/
dh_installdocs
install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev
install -p -m0644 debian/copyright debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/copyright
install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64
install -p -m0644 debian/copyright debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/copyright
install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec
install -p -m0644 debian/copyright debian/python3-isospec/usr/share/doc/python3-isospec/copyright
install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc
install -p -m0644 debian/copyright debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/copyright
install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc-base/
install -p -m0644 debian/libisospec\+\+-doc.doc-base debian/libisospec\+\+-doc/usr/share/doc-base/libisospec\+\+-doc.libisospec\+\+
dh_installchangelogs
install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64
install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/dh_installchangelogs.dch.trimmed debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog.Debian
install -p -m0644 ./CHANGELOG debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog
install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev
install -p -m0644 debian/.debhelper/generated/libisospec\+\+-dev/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog.Debian
install -p -m0644 ./CHANGELOG debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog
install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc
install -p -m0644 debian/.debhelper/generated/libisospec\+\+-doc/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog.Debian
install -p -m0644 ./CHANGELOG debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog
install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec
install -p -m0644 debian/.debhelper/generated/python3-isospec/dh_installchangelogs.dch.trimmed debian/python3-isospec/usr/share/doc/python3-isospec/changelog.Debian
install -p -m0644 ./CHANGELOG debian/python3-isospec/usr/share/doc/python3-isospec/changelog
dh_installman
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3
install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/
install -p -m0644 debian/tmp/usr/share/man/man3/ws_match_res.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3
man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3
mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3
chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3
dh_python3
D: dh_python3 dh_python3:180: version: 6.20250108
D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3']
D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None)
D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13)
D: dh_python3 debhelper:166: skipping package libisospec++-dev (missing ${python3:Depends} in Depends/Recommends)
D: dh_python3 debhelper:166: skipping package libisospec++2t64 (missing ${python3:Depends} in Depends/Recommends)
D: dh_python3 debhelper:166: skipping package libisospec++-doc (missing ${python3:Depends} in Depends/Recommends)
D: dh_python3 debhelper:174: source=isospec, binary packages=['python3-isospec']
D: dh_python3 dh_python3:205: processing package python3-isospec...
D: dh_python3 fs:50: moving files from debian/python3-isospec/usr/lib/python3.13/dist-packages to debian/python3-isospec/usr/lib/python3/dist-packages/
D: dh_python3 fs:338: package python3-isospec details = {'requires.txt': {'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/requires.txt'}, 'egg-info': {'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()}
D: dh_python3 depends:103: generating dependencies for package python3-isospec
D: dh_python3 pydist:175: trying to find dependency for cffi (python=None)
D: dh_python3 pydist:209: dependency: module seems to be installed
D: dh_python3 pydist:220: dependency: requirement already has hardcoded version
D: dh_python3 depends:253: D={'python3 (<< 3.14)', 'python3:any', 'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (>= 3.13~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_lintian
install -m0755 -d debian/libisospec\+\+2t64/usr/share/lintian/overrides
install -p -m0644 debian/libisospec\+\+2t64.lintian-overrides debian/libisospec\+\+2t64/usr/share/lintian/overrides/libisospec\+\+2t64
dh_perl
dh_link
install -m0755 -d debian/libisospec\+\+-dev/usr/lib/aarch64-linux-gnu
rm -f debian/libisospec\+\+-dev/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so
ln -s libIsoSpec\+\+.so.2.2.1 debian/libisospec\+\+-dev/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so
install -m0755 -d debian/libisospec\+\+2t64/usr/lib/aarch64-linux-gnu
rm -f debian/libisospec\+\+2t64/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so.2
ln -s libIsoSpec\+\+.so.2.2.1 debian/libisospec\+\+2t64/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so.2
dh_strip_nondeterminism
Using 1709121005 as canonical time
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_a.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_b.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_h.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_hd.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_sd.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_h.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_s.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_ad.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_bd.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_s.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_sd.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/closed.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_hd.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_f.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_fd.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/open.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_on.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_off.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_g.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbar.png using File::StripNondeterminism::handlers::png
Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbard.png using File::StripNondeterminism::handlers::png
dh_compress
cd debian/libisospec++2t64
cd debian/python3-isospec
cd debian/libisospec++-doc
cd debian/libisospec++-dev
chmod a-x usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian
chmod a-x usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3
chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian
chmod a-x usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/isospec/images/logo2_high.pdf usr/share/doc/isospec/images/logo2_long.pdf usr/share/doc/isospec/pdf/refman.pdf usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian
gzip -9nf usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian
gzip -9nf usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/isospec/images/logo2_high.pdf usr/share/doc/isospec/images/logo2_long.pdf usr/share/doc/isospec/pdf/refman.pdf usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian
cd '/build/reproducible-path/isospec-2.2.1'
gzip -9nf usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian
gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3
cd '/build/reproducible-path/isospec-2.2.1'
cd '/build/reproducible-path/isospec-2.2.1'
cd '/build/reproducible-path/isospec-2.2.1'
dh_fixperms
find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libisospec\+\+2t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libisospec\+\+-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libisospec\+\+-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libisospec\+\+2t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libisospec\+\+-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libisospec\+\+2t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libisospec\+\+2t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libisospec\+\+-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libisospec\+\+-dev/usr/share/man debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libisospec\+\+2t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libisospec\+\+-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libisospec\+\+2t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing
dh_dwz -a
dwz -- debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-313-aarch64-linux-gnu.so
dwz -- debian/libisospec\+\+2t64/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so.2.2.1
dh_strip -a
strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libisospec\+\+-dev/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.a
install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/3b
objcopy --only-keep-debug --compress-debug-sections debian/libisospec\+\+2t64/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so.2.2.1 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/3b/d0b69a837ec2f79180fbde585c388d01955a5f.debug
install -m0755 -d debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/1a
objcopy --only-keep-debug --compress-debug-sections debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/1a/c0948148cecac6ba6a9543fd61a7552c276d7e.debug
chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/1a/c0948148cecac6ba6a9543fd61a7552c276d7e.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-313-aarch64-linux-gnu.so
chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/3b/d0b69a837ec2f79180fbde585c388d01955a5f.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libisospec\+\+2t64/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so.2.2.1
objcopy --add-gnu-debuglink debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/1a/c0948148cecac6ba6a9543fd61a7552c276d7e.debug debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-313-aarch64-linux-gnu.so
objcopy --add-gnu-debuglink debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/3b/d0b69a837ec2f79180fbde585c388d01955a5f.debug debian/libisospec\+\+2t64/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so.2.2.1
install -m0755 -d debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc
ln -s python3-isospec debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc/python3-isospec-dbgsym
install -m0755 -d debian/.debhelper/python3-isospec
install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc
ln -s libisospec\+\+2t64 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc/libisospec\+\+2t64-dbgsym
install -m0755 -d debian/.debhelper/libisospec\+\+2t64
dh_makeshlibs -a
rm -f debian/libisospec\+\+-dev/DEBIAN/shlibs
rm -f debian/libisospec\+\+2t64/DEBIAN/shlibs
install -m0755 -d debian/libisospec\+\+2t64/DEBIAN
echo "libIsoSpec++ 2 libisospec++2t64 (>= 2.2.1)" >> debian/libisospec\+\+2t64/DEBIAN/shlibs
chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/shlibs
mv debian/.debhelper/generated/libisospec\+\+2t64/triggers.new debian/.debhelper/generated/libisospec\+\+2t64/triggers
mv debian/libisospec\+\+2t64.substvars.new debian/libisospec\+\+2t64.substvars
rm -f debian/python3-isospec/DEBIAN/shlibs
dh_shlibdeps -a
install -m0755 -d debian/libisospec\+\+2t64/DEBIAN
dpkg-shlibdeps -Tdebian/libisospec\+\+2t64.substvars debian/libisospec\+\+2t64/usr/lib/aarch64-linux-gnu/libIsoSpec\+\+.so.2.2.1
install -m0755 -d debian/python3-isospec/DEBIAN
dpkg-shlibdeps -Tdebian/python3-isospec.substvars debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-313-aarch64-linux-gnu.so
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb
install -m0755 -d debian/libisospec\+\+-dev/DEBIAN
install -m0755 -d debian/libisospec\+\+2t64/DEBIAN
install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/triggers debian/libisospec\+\+2t64/DEBIAN/triggers
install -m0755 -d debian/python3-isospec/DEBIAN
printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/postinst
cat debian/python3-isospec.postinst.debhelper >> debian/python3-isospec/DEBIAN/postinst
chmod 0755 -- debian/python3-isospec/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/prerm
cat debian/python3-isospec.prerm.debhelper >> debian/python3-isospec/DEBIAN/prerm
chmod 0755 -- debian/python3-isospec/DEBIAN/prerm
install -m0755 -d debian/libisospec\+\+-doc/DEBIAN
dh_gencontrol
install -m0755 -d debian/libisospec\+\+-dev/DEBIAN
echo misc:Depends= >> debian/libisospec++-dev.substvars
echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars
dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -cdebian/control -Pdebian/libisospec\+\+-dev
install -m0755 -d debian/python3-isospec/DEBIAN
echo misc:Depends= >> debian/python3-isospec.substvars
echo misc:Pre-Depends= >> debian/python3-isospec.substvars
install -m0755 -d debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -cdebian/control -Pdebian/.debhelper/python3-isospec/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-isospec-dbgsym "-DDepends=python3-isospec (= \${binary:Version})" "-DDescription=debug symbols for python3-isospec" -DBuild-Ids=1ac0948148cecac6ba6a9543fd61a7552c276d7e -DSection=debug -UMulti-Arch -UReplaces -UBreaks
install -m0755 -d debian/libisospec\+\+-doc/DEBIAN
echo misc:Depends= >> debian/libisospec++-doc.substvars
echo misc:Pre-Depends= >> debian/libisospec++-doc.substvars
dpkg-gencontrol -plibisospec\+\+-doc -ldebian/changelog -Tdebian/libisospec\+\+-doc.substvars -cdebian/control -Pdebian/libisospec\+\+-doc
install -m0755 -d debian/libisospec\+\+2t64/DEBIAN
echo misc:Depends= >> debian/libisospec++2t64.substvars
echo misc:Pre-Depends= >> debian/libisospec++2t64.substvars
install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN
dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/.debhelper/libisospec\+\+2t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libisospec\+\+2t64-dbgsym "-DDepends=libisospec++2t64 (= \${binary:Version})" "-DDescription=debug symbols for libisospec++2t64" -DBuild-Ids=3bd0b69a837ec2f79180fbde585c388d01955a5f -DSection=debug -UReplaces -UBreaks
chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/control
chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control
chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/control
dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/libisospec\+\+2t64
chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -cdebian/control -Pdebian/python3-isospec
chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/control
chmod 0644 -- debian/python3-isospec/DEBIAN/control
dh_md5sums
install -m0755 -d debian/python3-isospec/DEBIAN
install -m0755 -d debian/libisospec\+\+2t64/DEBIAN
install -m0755 -d debian/libisospec\+\+-dev/DEBIAN
cd debian/libisospec++-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
install -m0755 -d debian/libisospec\+\+-doc/DEBIAN
cd debian/libisospec++2t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/libisospec++-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/python3-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums
chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN
chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/md5sums
chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN
cd debian/.debhelper/python3-isospec/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/.debhelper/libisospec++2t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/md5sums
dh_builddeb
dpkg-deb --root-owner-group --build debian/libisospec\+\+2t64 ..
dpkg-deb --root-owner-group --build debian/libisospec\+\+-dev ..
dpkg-deb --root-owner-group --build debian/python3-isospec ..
dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_2.2.1-4.1_arm64.deb'.
dpkg-deb: building package 'libisospec++2t64' in '../libisospec++2t64_2.2.1-4.1_arm64.deb'.
dpkg-deb --root-owner-group --build debian/.debhelper/python3-isospec/dbgsym-root ..
dpkg-deb --root-owner-group --build debian/.debhelper/libisospec\+\+2t64/dbgsym-root ..
dpkg-deb: building package 'libisospec++2t64-dbgsym' in '../libisospec++2t64-dbgsym_2.2.1-4.1_arm64.deb'.
dpkg-deb: building package 'python3-isospec' in '../python3-isospec_2.2.1-4.1_arm64.deb'.
dpkg-deb --root-owner-group --build debian/libisospec\+\+-doc ..
dpkg-deb: building package 'python3-isospec-dbgsym' in '../python3-isospec-dbgsym_2.2.1-4.1_arm64.deb'.
dpkg-deb: building package 'libisospec++-doc' in '../libisospec++-doc_2.2.1-4.1_all.deb'.
dpkg-genbuildinfo --build=binary -O../isospec_2.2.1-4.1_arm64.buildinfo
dpkg-genchanges --build=binary -O../isospec_2.2.1-4.1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1867222 and its subdirectories
I: Current time: Tue Mar 10 14:07:10 -12 2026
I: pbuilder-time-stamp: 1773194830
Wed Feb 5 19:44:12 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net.
Wed Feb 5 19:44:12 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net.
Wed Feb 5 19:48:20 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
Wed Feb 5 19:48:21 UTC 2025 I: isospec_2.2.1-4.1_arm64.changes:
Format: 1.8
Date: Wed, 28 Feb 2024 11:50:05 +0000
Source: isospec
Binary: libisospec++-dev libisospec++-doc libisospec++2t64 libisospec++2t64-dbgsym python3-isospec python3-isospec-dbgsym
Architecture: arm64 all
Version: 2.2.1-4.1
Distribution: unstable
Urgency: medium
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Changed-By: Lukas Märdian <slyon@debian.org>
Description:
libisospec++-dev - Isotopic fine structure calculator (C++ development files)
libisospec++-doc - Isotopic fine structure calculator (C++ API documentation)
libisospec++2t64 - Isotopic fine structure calculator (C++ runtime)
python3-isospec - Isotopic fine structure calculator for Python 3
Closes: 1062459
Changes:
isospec (2.2.1-4.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Rename libraries for 64-bit time_t transition. Closes: #1062459
Checksums-Sha1:
1a12c0a6854da7be7227c9226f17cf282d1d17fc 12386 isospec_2.2.1-4.1_arm64.buildinfo
da8a1876349de200555f048dd1e868c16009af7e 123364 libisospec++-dev_2.2.1-4.1_arm64.deb
f68d3540ea967342c8a1a2abc9d7d70b4c4666d7 1554552 libisospec++-doc_2.2.1-4.1_all.deb
6d6fc80b541103ef29d5cb622aa7735225eb2064 283700 libisospec++2t64-dbgsym_2.2.1-4.1_arm64.deb
f3a8f31f0502181d027b9781651e02867b0d6f20 61200 libisospec++2t64_2.2.1-4.1_arm64.deb
f31676098b62f45cc71dc4db846e654de9266811 295320 python3-isospec-dbgsym_2.2.1-4.1_arm64.deb
d4dd501b68d946a854cb4a01607fe02fad810af4 79368 python3-isospec_2.2.1-4.1_arm64.deb
Checksums-Sha256:
f856a4958fff5354e1f132887598aa082918d2f64d4f4d0874b6c8a06bd31182 12386 isospec_2.2.1-4.1_arm64.buildinfo
4654ed8dbca04c40839246ce37a64e5a1d326dc935d2e88290fc07df219618e1 123364 libisospec++-dev_2.2.1-4.1_arm64.deb
2c5e257800ba8dd37b66718974a6837a6b35918975b6104afe0be8f5865f6e9e 1554552 libisospec++-doc_2.2.1-4.1_all.deb
9a54039ba0e47c0efb5d1371c2a62359571bd6f21e1728298aca7d37b3e6c189 283700 libisospec++2t64-dbgsym_2.2.1-4.1_arm64.deb
146dfd0b2d5894cb229735c66085234eb9c889e045836491482bdfd3c5ab2dcc 61200 libisospec++2t64_2.2.1-4.1_arm64.deb
90f5bcb67b05d5549c45b7c74ce8054d4cb7fcd808360edd9e626e91b4ab7a2f 295320 python3-isospec-dbgsym_2.2.1-4.1_arm64.deb
420f578ab7a7df3369841080572e215512507cc53305f0176d11c96be9ee43df 79368 python3-isospec_2.2.1-4.1_arm64.deb
Files:
8fc5a70177ea3f3a86076b988cccfb2c 12386 science optional isospec_2.2.1-4.1_arm64.buildinfo
90518b911035c616ca65cc73d50a0cc7 123364 libdevel optional libisospec++-dev_2.2.1-4.1_arm64.deb
76f437ffef86818f3b1cad43861b82aa 1554552 doc optional libisospec++-doc_2.2.1-4.1_all.deb
e03f0604a06a4d8fe08ed287731e4196 283700 debug optional libisospec++2t64-dbgsym_2.2.1-4.1_arm64.deb
5c0e051e903545e5d594209fda56b748 61200 libs optional libisospec++2t64_2.2.1-4.1_arm64.deb
84bf15826f5182a55d0b8127d9087c6b 295320 debug optional python3-isospec-dbgsym_2.2.1-4.1_arm64.deb
cfd79d38d7c3f3281f6962f647b93bd8 79368 python optional python3-isospec_2.2.1-4.1_arm64.deb
Wed Feb 5 19:48:22 UTC 2025 I: diffoscope 287 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_6-78314.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.neLPUE7O/isospec_2.2.1-4.1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.neLPUE7O/isospec_2.2.1-4.1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.neLPUE7O/isospec_2.2.1-4.1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.neLPUE7O/b1/isospec_2.2.1-4.1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.neLPUE7O/b2/isospec_2.2.1-4.1_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 222ms
CPU time consumed: 223ms
Wed Feb 5 19:48:23 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists.
Wed Feb 5 19:48:23 UTC 2025 I: isospec from trixie built successfully and reproducibly on arm64.
Wed Feb 5 19:48:24 UTC 2025 I: Submitting .buildinfo files to external archives:
Wed Feb 5 19:48:24 UTC 2025 I: Submitting 16K b1/isospec_2.2.1-4.1_arm64.buildinfo.asc
Wed Feb 5 19:48:24 UTC 2025 I: Submitting 16K b2/isospec_2.2.1-4.1_arm64.buildinfo.asc
Wed Feb 5 19:48:26 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Feb 5 19:48:26 UTC 2025 I: Done submitting .buildinfo files.
Wed Feb 5 19:48:26 UTC 2025 I: Removing signed isospec_2.2.1-4.1_arm64.buildinfo.asc files:
removed './b1/isospec_2.2.1-4.1_arm64.buildinfo.asc'
removed './b2/isospec_2.2.1-4.1_arm64.buildinfo.asc'