Fri Feb 7 06:00:38 UTC 2025 I: starting to build kmerresistance/trixie/arm64 on jenkins on '2025-02-07 06:00' Fri Feb 7 06:00:38 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/78542/console.log Fri Feb 7 06:00:38 UTC 2025 I: Downloading source for trixie/kmerresistance=2.2.0-4 --2025-02-07 06:00:38-- http://deb.debian.org/debian/pool/main/k/kmerresistance/kmerresistance_2.2.0-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2190 (2.1K) [text/prs.lines.tag] Saving to: ‘kmerresistance_2.2.0-4.dsc’ 0K .. 100% 330M=0s 2025-02-07 06:00:38 (330 MB/s) - ‘kmerresistance_2.2.0-4.dsc’ saved [2190/2190] Fri Feb 7 06:00:38 UTC 2025 I: kmerresistance_2.2.0-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kmerresistance Binary: kmerresistance Architecture: any Version: 2.2.0-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://bitbucket.org/genomicepidemiology/kmerresistance Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/kmerresistance Vcs-Git: https://salsa.debian.org/med-team/kmerresistance.git Build-Depends: debhelper-compat (= 13), kma Package-List: kmerresistance deb science optional arch=any Checksums-Sha1: 397199d07733153e2fa0319de3dfd4f9f8e67b82 5668 kmerresistance_2.2.0.orig.tar.bz2 ec87f3193d1ebe7af6cf9f8902a713b9c8c2353b 4456 kmerresistance_2.2.0-4.debian.tar.xz Checksums-Sha256: 16ba92368a38c223fda7ba642060e76987a2fd88cc58e5d826143b7ce533da22 5668 kmerresistance_2.2.0.orig.tar.bz2 69a2d72df31d76c071eba868ec39d4ca9d2be37e70b7d91bfd5da6bdb7d72e4a 4456 kmerresistance_2.2.0-4.debian.tar.xz Files: 0db86e2c377b890a2c14a4a16ae0e003 5668 kmerresistance_2.2.0.orig.tar.bz2 ec2acf7c8d76e18418cc38f8967ad54e 4456 kmerresistance_2.2.0-4.debian.tar.xz Dgit: ebabdab1696694d04c674e827bf1bf3561e2c66e debian archive/debian/2.2.0-4 https://git.dgit.debian.org/kmerresistance -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmM4dxQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq9PhAAnc4hZB9xnklpZ2Kscj9I3Q0Zbi1I +SsIsFpKyk19mJDQELyyJmGppRLL4EsvthxSUSWt/cEXtTmMVw1kxfw8aKxnzZI1 hLNqS4NoDQ16W5fyaFK7O5tLuq/hmTsANudkEsvzC8R6jhZePFGTq8EzStd4NGgd RM1ohW0rBMGfFSCDmT22egJ9r23VuHjkO7FOQGixyBgLo3Fs0O5wKQg2OG4CFuui fMdffH7f152I02bF39P4hyfF0eijAE1aOB2/u/cud4Pq7UYhg1L1GB8Yz7N5SnB3 miTKqU6Ff0DbFXmvj8F6IW0K7SQq/I3aOX666BakwGt0zfllAaFfd/c6eZFvChzK mxMGRsUkchpyzCYQdTWP+GyjVrg+C3fg6qgkOJhsYihpTuwpbCLuJXjuKlseUbRj 2rob8Sn+0OTy0vSjtJ0K3rpEupQvLcfoPFdA70iDvlI9ZE2xe1SjGyRFj91V4rEL 5A9N7NArvi9Nc07JODQkKGf6Rnbgp/h8QWqE9H5lQG7eyZO0J6/8bS2AcTKHYQZZ t+g0xmiO4nxzrGduBxwo7JX/TJuxD2mfz2HFbxhsZfQHQ8axmum8rnrFyOTuDHMa HlCEYtubFW3sczoAnIL4vqYydg8IWsXmIYxXgEKRlSFdvUy+bKKK9QvIH52lHIuC T7POdguXu6QDq0A= =z04F -----END PGP SIGNATURE----- Fri Feb 7 06:00:38 UTC 2025 I: Checking whether the package is not for us Fri Feb 7 06:00:38 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri Feb 7 06:00:38 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri Feb 7 06:01:02 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 12 00:23:40 -12 2026 I: pbuilder-time-stamp: 1773318220 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmerresistance_2.2.0-4.dsc] I: copying [./kmerresistance_2.2.0.orig.tar.bz2] I: copying [./kmerresistance_2.2.0-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kmerresistance_2.2.0-4.dsc: unsupported subcommand dpkg-source: info: extracting kmerresistance in kmerresistance-2.2.0 dpkg-source: info: unpacking kmerresistance_2.2.0.orig.tar.bz2 dpkg-source: info: unpacking kmerresistance_2.2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3790719/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='48acce51db5f410fbdb99b850193d1a6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3790719' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.crEBz6l2/pbuilderrc_KoyM --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.crEBz6l2/b1 --logfile b1/build.log kmerresistance_2.2.0-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3790719/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), kma dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on kma; however: Package kma is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} kma{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB of archives. After unpacking 81.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 kma arm64 1.4.15-1 [207 kB] Fetched 20.3 MB in 0s (125 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-2_arm64.deb ... Unpacking bsdextrautils (2.40.4-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package kma. Preparing to unpack .../30-kma_1.4.15-1_arm64.deb ... Unpacking kma (1.4.15-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up kma (1.4.15-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kmerresistance-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmerresistance_2.2.0-4_source.changes dpkg-buildpackage: info: source package kmerresistance dpkg-buildpackage: info: source version 2.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/kmerresistance-2.2.0' rm -f kmerresistance pherror.o qseqs.o make[1]: Leaving directory '/build/reproducible-path/kmerresistance-2.2.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kmerresistance-2.2.0' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -o kmerresistance KmerResistance.c pherror.o qseqs.o -lm -Wl,-z,relro -Wl,-z,now In file included from /usr/include/stdio.h:970, from KmerResistance.c:24: In function 'sprintf', inlined from 'main' at KmerResistance.c:278:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'KMA_call' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'sprintf', inlined from 'main' at KmerResistance.c:287:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'KMA_call' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ KmerResistance.c: In function 'main': KmerResistance.c:310:9: warning: 'out_len' may be used uninitialized [-Wmaybe-uninitialized] 310 | strcpy((outputfilename + out_len), ".spa"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ KmerResistance.c:120:33: note: 'out_len' was declared here 120 | int args, KMA_call_len, out_len, stop; | ^~~~~~~ make[1]: Leaving directory '/build/reproducible-path/kmerresistance-2.2.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kmerresistance/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'kmerresistance-dbgsym' in '../kmerresistance-dbgsym_2.2.0-4_arm64.deb'. dpkg-deb: building package 'kmerresistance' in '../kmerresistance_2.2.0-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../kmerresistance_2.2.0-4_arm64.buildinfo dpkg-genchanges --build=binary -O../kmerresistance_2.2.0-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3790719 and its subdirectories I: Current time: Thu Mar 12 00:24:01 -12 2026 I: pbuilder-time-stamp: 1773318241 Fri Feb 7 06:01:03 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Feb 7 06:01:03 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Feb 7 06:01:33 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Feb 7 06:01:34 UTC 2025 I: kmerresistance_2.2.0-4_arm64.changes: Format: 1.8 Date: Sat, 01 Oct 2022 19:11:03 +0200 Source: kmerresistance Binary: kmerresistance kmerresistance-dbgsym Architecture: arm64 Version: 2.2.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: kmerresistance - correlates mapped genes with the predicted species of WGS samples Changes: kmerresistance (2.2.0-4) unstable; urgency=medium . * d/watch: switch to git mode following changes in bitbucket. * d/control: declare compliance to standards version 4.6.1. Checksums-Sha1: a942252f4b7e3d6950488636e70e6d0b2c903e3a 18284 kmerresistance-dbgsym_2.2.0-4_arm64.deb b52c1a39b0f5fcb756796e5de4f12d2bdda4de9e 5071 kmerresistance_2.2.0-4_arm64.buildinfo a99d801bd8527c6935b857a0a3c83763fed71967 10944 kmerresistance_2.2.0-4_arm64.deb Checksums-Sha256: 5e0581e6674eed596fbb520fff87f4cd6c6f6a3673c87f72087522bff7134c6f 18284 kmerresistance-dbgsym_2.2.0-4_arm64.deb 495f5e63972676706015484bb7d25d2c1a75bd18be0854b3322b8f775737f32d 5071 kmerresistance_2.2.0-4_arm64.buildinfo 839cefcd8f35b46bddbb5e13a17c07c849f9aefb362b3c34b45d787c995772a7 10944 kmerresistance_2.2.0-4_arm64.deb Files: 99157d7bb2d23b15d21f5f7dd539a1b6 18284 debug optional kmerresistance-dbgsym_2.2.0-4_arm64.deb c119505a0b1325268b34bfe1dcad5f66 5071 science optional kmerresistance_2.2.0-4_arm64.buildinfo 6fdf29d02f24fe205fb69d68041e036d 10944 science optional kmerresistance_2.2.0-4_arm64.deb Fri Feb 7 06:01:35 UTC 2025 I: diffoscope 287 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_6-78542.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.crEBz6l2/kmerresistance_2.2.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.crEBz6l2/kmerresistance_2.2.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.crEBz6l2/kmerresistance_2.2.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.crEBz6l2/b1/kmerresistance_2.2.0-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.crEBz6l2/b2/kmerresistance_2.2.0-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 230ms CPU time consumed: 229ms Fri Feb 7 06:01:36 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists. Fri Feb 7 06:01:36 UTC 2025 I: kmerresistance from trixie built successfully and reproducibly on arm64. Fri Feb 7 06:01:37 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Feb 7 06:01:37 UTC 2025 I: Submitting 8.0K b1/kmerresistance_2.2.0-4_arm64.buildinfo.asc Fri Feb 7 06:01:38 UTC 2025 I: Submitting 8.0K b2/kmerresistance_2.2.0-4_arm64.buildinfo.asc Fri Feb 7 06:01:38 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Feb 7 06:01:38 UTC 2025 I: Done submitting .buildinfo files. Fri Feb 7 06:01:38 UTC 2025 I: Removing signed kmerresistance_2.2.0-4_arm64.buildinfo.asc files: removed './b1/kmerresistance_2.2.0-4_arm64.buildinfo.asc' removed './b2/kmerresistance_2.2.0-4_arm64.buildinfo.asc'