Fri Feb 7 06:33:33 UTC 2025 I: starting to build libbio-db-gff-perl/trixie/arm64 on jenkins on '2025-02-07 06:33'
Fri Feb 7 06:33:33 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/56116/console.log
Fri Feb 7 06:33:33 UTC 2025 I: Downloading source for trixie/libbio-db-gff-perl=1.7.4-1
--2025-02-07 06:33:34-- http://deb.debian.org/debian/pool/main/libb/libbio-db-gff-perl/libbio-db-gff-perl_1.7.4-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2124 (2.1K) [text/prs.lines.tag]
Saving to: ‘libbio-db-gff-perl_1.7.4-1.dsc’
0K .. 100% 355M=0s
2025-02-07 06:33:34 (355 MB/s) - ‘libbio-db-gff-perl_1.7.4-1.dsc’ saved [2124/2124]
Fri Feb 7 06:33:34 UTC 2025 I: libbio-db-gff-perl_1.7.4-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: libbio-db-gff-perl
Binary: libbio-db-gff-perl
Architecture: all
Version: 1.7.4-1
Maintainer: Michael R. Crusoe <michael.crusoe@gmail.com>
Homepage: https://metacpan.org/release/Bio-DB-GFF
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-gff-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-db-gdd.git
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 12), libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl, libtest-most-perl, libmodule-build-perl
Build-Depends-Indep: perl
Package-List:
libbio-db-gff-perl deb perl optional arch=all
Checksums-Sha1:
a8119d0f8d43e2380f89531a18a366e97dc10ef3 281469 libbio-db-gff-perl_1.7.4.orig.tar.gz
2b12f80c493209c5cade7ebb00c9533cdfef2011 1968 libbio-db-gff-perl_1.7.4-1.debian.tar.xz
Checksums-Sha256:
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9fa118d284e408097733127e7733f15fcefd19cb40f1297d43fdf3c435a8ffc4 1968 libbio-db-gff-perl_1.7.4-1.debian.tar.xz
Files:
f603ebc9a1d8574cdfc4812ef4b9abec 281469 libbio-db-gff-perl_1.7.4.orig.tar.gz
01ce0df5e07509f48b2834190764e98c 1968 libbio-db-gff-perl_1.7.4-1.debian.tar.xz
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Fri Feb 7 06:33:34 UTC 2025 I: Checking whether the package is not for us
Fri Feb 7 06:33:34 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net.
Fri Feb 7 06:33:34 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Fri Feb 7 06:34:13 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Feb 6 18:33:36 -12 2025
I: pbuilder-time-stamp: 1738910016
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libbio-db-gff-perl_1.7.4-1.dsc]
I: copying [./libbio-db-gff-perl_1.7.4.orig.tar.gz]
I: copying [./libbio-db-gff-perl_1.7.4-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./libbio-db-gff-perl_1.7.4-1.dsc: unsupported subcommand
dpkg-source: info: extracting libbio-db-gff-perl in libbio-db-gff-perl-1.7.4
dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4.orig.tar.gz
dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4-1.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2981559/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='f83d537d85de4e08b7aa79824704cf1c'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2981559'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/pbuilderrc_asdn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/b1 --logfile b1/build.log libbio-db-gff-perl_1.7.4-1.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2981559/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl, libtest-most-perl, libmodule-build-perl, perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libapache-dbi-perl; however:
Package libapache-dbi-perl is not installed.
pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
Package libbio-perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libbio-db-biofetch-perl; however:
Package libbio-db-biofetch-perl is not installed.
pbuilder-satisfydepends-dummy depends on libcgi-pm-perl; however:
Package libcgi-pm-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
Package libtest-most-perl is not installed.
pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however:
Package libmodule-build-perl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
apache2-bin{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libapache-dbi-perl{a} libapache2-mod-perl2{a} libapr1t64{a} libaprutil1-dbd-sqlite3{a} libaprutil1-ldap{a} libaprutil1t64{a} libarchive-zip-perl{a} libbio-db-biofetch-perl{a} libbio-perl-perl{a} libbrotli1{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libcom-err2{a} libcurl4t64{a} libdata-stag-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libffi8{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-build-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-uplevel-perl{a} libtasn1-6{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
bioperl-run curl krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache2-reload-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libbsd-resource-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libmodule-signature-perl libpod-readme-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk publicsuffix wget
0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded.
Need to get 34.3 MB of archives. After unpacking 133 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.4.0-2 [1385 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20241223 [164 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 libapr1t64 arm64 1.7.5-1 [97.1 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 libaprutil1t64 arm64 1.6.3-3+b1 [86.2 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 libaprutil1-dbd-sqlite3 arm64 1.6.3-3+b1 [14.2 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 libaprutil1-ldap arm64 1.6.3-3+b1 [12.4 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 27 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 38 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 39 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB]
Get: 40 http://deb.debian.org/debian trixie/main arm64 liblua5.4-0 arm64 5.4.7-1+b2 [134 kB]
Get: 41 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 42 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 43 http://deb.debian.org/debian trixie/main arm64 apache2-bin arm64 2.4.63-1 [1289 kB]
Get: 44 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 45 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 46 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 47 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 48 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 49 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 50 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 52 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 53 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 54 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 55 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 56 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 57 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 58 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 59 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 60 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Get: 61 http://deb.debian.org/debian trixie/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 62 http://deb.debian.org/debian trixie/main arm64 libdevel-symdump-perl all 2.18-5 [15.8 kB]
Get: 63 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB]
Get: 64 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 65 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 66 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get: 67 http://deb.debian.org/debian trixie/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get: 68 http://deb.debian.org/debian trixie/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get: 69 http://deb.debian.org/debian trixie/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB]
Get: 70 http://deb.debian.org/debian trixie/main arm64 libhtml-tree-perl all 5.07-3 [211 kB]
Get: 71 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB]
Get: 72 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 73 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 74 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get: 75 http://deb.debian.org/debian trixie/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get: 76 http://deb.debian.org/debian trixie/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get: 77 http://deb.debian.org/debian trixie/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B]
Get: 78 http://deb.debian.org/debian trixie/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB]
Get: 79 http://deb.debian.org/debian trixie/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get: 80 http://deb.debian.org/debian trixie/main arm64 libnet-http-perl all 6.23-1 [23.9 kB]
Get: 81 http://deb.debian.org/debian trixie/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get: 82 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get: 83 http://deb.debian.org/debian trixie/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 84 http://deb.debian.org/debian trixie/main arm64 libwww-perl all 6.77-1 [183 kB]
Get: 85 http://deb.debian.org/debian trixie/main arm64 libapache2-mod-perl2 arm64 2.0.13-2+b1 [794 kB]
Get: 86 http://deb.debian.org/debian trixie/main arm64 libdbi-perl arm64 1.647-1 [856 kB]
Get: 87 http://deb.debian.org/debian trixie/main arm64 libapache-dbi-perl all 1.12-3 [48.5 kB]
Get: 88 http://deb.debian.org/debian trixie/main arm64 libio-string-perl all 1.08-4 [12.1 kB]
Get: 89 http://deb.debian.org/debian trixie/main arm64 libdata-stag-perl all 0.14-3 [448 kB]
Get: 90 http://deb.debian.org/debian trixie/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 91 http://deb.debian.org/debian trixie/main arm64 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB]
Get: 92 http://deb.debian.org/debian trixie/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get: 93 http://deb.debian.org/debian trixie/main arm64 libcgi-pm-perl all 4.67-1 [217 kB]
Get: 94 http://deb.debian.org/debian trixie/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get: 95 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get: 96 http://deb.debian.org/debian trixie/main arm64 libexception-class-perl all 1.45-1 [34.6 kB]
Get: 97 http://deb.debian.org/debian trixie/main arm64 libmodule-build-perl all 0.423400-2 [252 kB]
Get: 98 http://deb.debian.org/debian trixie/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 99 http://deb.debian.org/debian trixie/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 100 http://deb.debian.org/debian trixie/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB]
Get: 101 http://deb.debian.org/debian trixie/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB]
Get: 102 http://deb.debian.org/debian trixie/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 103 http://deb.debian.org/debian trixie/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB]
Get: 104 http://deb.debian.org/debian trixie/main arm64 libtest-most-perl all 0.38-1 [25.1 kB]
Fetched 34.3 MB in 0s (215 MB/s)
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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl'
Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl'
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Reading package lists...
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-> Finished parsing the build-deps
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fakeroot is already the newest version (1.37-1).
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I: Building the package
I: Running cd /build/reproducible-path/libbio-db-gff-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-gff-perl_1.7.4-1_source.changes
dpkg-buildpackage: info: source package libbio-db-gff-perl
dpkg-buildpackage: info: source version 1.7.4-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <michael.crusoe@gmail.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-gff-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-gff-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::DB::GFF
Writing MYMETA.yml and MYMETA.json
dh_auto_build
make -j12
make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4'
cp lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm blib/lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
cp lib/Bio/DB/GFF/Adaptor/dbi.pm blib/lib/Bio/DB/GFF/Adaptor/dbi.pm
cp lib/Bio/DB/GFF.pm blib/lib/Bio/DB/GFF.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm
cp lib/Bio/DB/GFF/Adaptor/berkeleydb.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm
cp lib/Bio/DB/GFF/Aggregator/match.pm blib/lib/Bio/DB/GFF/Aggregator/match.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
cp lib/Bio/DB/GFF/Aggregator/alignment.pm blib/lib/Bio/DB/GFF/Aggregator/alignment.pm
cp lib/Bio/DB/GFF/Aggregator/transcript.pm blib/lib/Bio/DB/GFF/Aggregator/transcript.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/pg.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
cp lib/Bio/DB/GFF/Aggregator.pm blib/lib/Bio/DB/GFF/Aggregator.pm
cp lib/Bio/DB/GFF/Aggregator/none.pm blib/lib/Bio/DB/GFF/Aggregator/none.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm
cp lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
cp lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm
cp lib/Bio/DB/GFF/Aggregator/clone.pm blib/lib/Bio/DB/GFF/Aggregator/clone.pm
cp lib/Bio/DB/GFF/Aggregator/so_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/so_transcript.pm
cp lib/Bio/DB/GFF/Adaptor/memory/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/memory/iterator.pm
cp lib/Bio/DB/GFF/Aggregator/coding.pm blib/lib/Bio/DB/GFF/Aggregator/coding.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
cp lib/Bio/DB/GFF/Adaptor/memory.pm blib/lib/Bio/DB/GFF/Adaptor/memory.pm
cp lib/Bio/DB/GFF/Aggregator/orf.pm blib/lib/Bio/DB/GFF/Aggregator/orf.pm
cp lib/Bio/DB/GFF/Adaptor/biofetch.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
cp lib/Bio/DB/GFF/Aggregator/processed_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/processed_transcript.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
cp lib/Bio/DB/GFF/Aggregator/gene.pm blib/lib/Bio/DB/GFF/Aggregator/gene.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm
cp lib/Bio/DB/GFF/Homol.pm blib/lib/Bio/DB/GFF/Homol.pm
cp lib/Bio/DB/GFF/RelSegment.pm blib/lib/Bio/DB/GFF/RelSegment.pm
cp lib/Bio/DB/GFF/Feature.pm blib/lib/Bio/DB/GFF/Feature.pm
cp lib/Bio/DB/GFF/Featname.pm blib/lib/Bio/DB/GFF/Featname.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm
cp lib/Bio/DB/GFF/Typename.pm blib/lib/Bio/DB/GFF/Typename.pm
cp lib/Bio/DB/GFF/Segment.pm blib/lib/Bio/DB/GFF/Segment.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm
cp bin/bp_bulk_load_gff blib/script/bp_bulk_load_gff
cp bin/bp_das_server blib/script/bp_das_server
cp bin/bp_fast_load_gff blib/script/bp_fast_load_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_bulk_load_gff
cp bin/bp_genbank2gff blib/script/bp_genbank2gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_das_server
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fast_load_gff
cp bin/bp_generate_histogram blib/script/bp_generate_histogram
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank2gff
cp bin/bp_load_gff blib/script/bp_load_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_generate_histogram
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_load_gff
cp bin/bp_meta_gff blib/script/bp_meta_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_meta_gff
Manifying 6 pod documents
Manifying 27 pod documents
Manifying 16 pod documents
make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4'
dh_auto_test
make -j12 test TEST_VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t .........
1..50
ok 1 - Bio/DB/GFF.pm loaded ok
ok 2 - Bio/DB/GFF/Adaptor/berkeleydb.pm loaded ok
ok 3 - Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm loaded ok
ok 4 - Bio/DB/GFF/Adaptor/biofetch.pm loaded ok
ok 5 - Bio/DB/GFF/Adaptor/biofetch_oracle.pm loaded ok
ok 6 - Bio/DB/GFF/Adaptor/dbi.pm loaded ok
ok 7 - Bio/DB/GFF/Adaptor/dbi/caching_handle.pm loaded ok
ok 8 - Bio/DB/GFF/Adaptor/dbi/iterator.pm loaded ok
ok 9 - Bio/DB/GFF/Adaptor/dbi/mysql.pm loaded ok
ok 10 - Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm loaded ok
ok 11 - Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm loaded ok
ok 12 - Bio/DB/GFF/Adaptor/dbi/oracle.pm loaded ok
ok 13 - Bio/DB/GFF/Adaptor/dbi/pg.pm loaded ok
ok 14 - Bio/DB/GFF/Adaptor/dbi/pg_fts.pm loaded ok
ok 15 - Bio/DB/GFF/Adaptor/memory.pm loaded ok
ok 16 - Bio/DB/GFF/Adaptor/memory/feature_serializer.pm loaded ok
ok 17 - Bio/DB/GFF/Adaptor/memory/iterator.pm loaded ok
ok 18 - Bio/DB/GFF/Aggregator.pm loaded ok
ok 19 - Bio/DB/GFF/Aggregator/alignment.pm loaded ok
ok 20 - Bio/DB/GFF/Aggregator/clone.pm loaded ok
ok 21 - Bio/DB/GFF/Aggregator/coding.pm loaded ok
ok 22 - Bio/DB/GFF/Aggregator/gene.pm loaded ok
ok 23 - Bio/DB/GFF/Aggregator/match.pm loaded ok
ok 24 - Bio/DB/GFF/Aggregator/none.pm loaded ok
ok 25 - Bio/DB/GFF/Aggregator/orf.pm loaded ok
ok 26 - Bio/DB/GFF/Aggregator/processed_transcript.pm loaded ok
ok 27 - Bio/DB/GFF/Aggregator/so_transcript.pm loaded ok
ok 28 - Bio/DB/GFF/Aggregator/transcript.pm loaded ok
ok 29 - Bio/DB/GFF/Aggregator/ucsc_acembly.pm loaded ok
ok 30 - Bio/DB/GFF/Aggregator/ucsc_ensgene.pm loaded ok
ok 31 - Bio/DB/GFF/Aggregator/ucsc_genscan.pm loaded ok
ok 32 - Bio/DB/GFF/Aggregator/ucsc_refgene.pm loaded ok
ok 33 - Bio/DB/GFF/Aggregator/ucsc_sanger22.pm loaded ok
ok 34 - Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm loaded ok
ok 35 - Bio/DB/GFF/Aggregator/ucsc_softberry.pm loaded ok
ok 36 - Bio/DB/GFF/Aggregator/ucsc_twinscan.pm loaded ok
ok 37 - Bio/DB/GFF/Aggregator/ucsc_unigene.pm loaded ok
ok 38 - Bio/DB/GFF/Featname.pm loaded ok
ok 39 - Bio/DB/GFF/Feature.pm loaded ok
ok 40 - Bio/DB/GFF/Homol.pm loaded ok
ok 41 - Bio/DB/GFF/RelSegment.pm loaded ok
ok 42 - Bio/DB/GFF/Segment.pm loaded ok
ok 43 - Bio/DB/GFF/Typename.pm loaded ok
ok 44 - bin/bp_bulk_load_gff compiled ok
ok 45 - bin/bp_das_server compiled ok
ok 46 - bin/bp_fast_load_gff compiled ok
ok 47 - bin/bp_genbank2gff compiled ok
ok 48 - bin/bp_generate_histogram compiled ok
ok 49 - bin/bp_load_gff compiled ok
ok 50 - bin/bp_meta_gff compiled ok
ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author
You are loading a Bio::DB::GFF database with GFF3 formatted data.
While this will likely work fine, the Bio::DB::GFF schema does not
always faithfully capture the complexity represented in GFF3 files.
Unless you have a specific reason for using Bio::DB::GFF, we suggest
that you use a Bio::DB::SeqFeature::Store database and its corresponding
loader, bp_seqfeature_load.pl.
t/BioDBGFF.t ...........
1..275
ok 1 - use Bio::DB::GFF;
ok 2
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ok 100
ok 101 # skip fetch_feature_by_gid() not implemented by this adaptor
ok 102 # skip fetch_feature_by_gid() not implemented by this adaptor
ok 103
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ok 131
ok 132 # skip delete_groups() not implemented by this adaptor
ok 133 # skip delete_groups() not implemented by this adaptor
ok 134
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ok 238 # skip fetch_feature_by_gid() not implemented by this adaptor
ok 239 # skip fetch_feature_by_gid() not implemented by this adaptor
ok 240
ok 241
ok 242
ok 243
ok 244
ok 245
ok 246 # skip preferred groups are not supported by gff3
ok 247 # skip preferred groups are not supported by gff3
ok 248 # skip preferred groups are not supported by gff3
ok 249
ok 250
ok 251
ok 252
ok 253
ok 254
ok 255
ok 256
ok 257
ok 258
ok 259
ok 260
ok 261
ok 262
ok 263
ok 264
ok 265
ok 266
ok 267
ok 268
ok 269 # skip delete_groups() not implemented by this adaptor
ok 270 # skip delete_groups() not implemented by this adaptor
ok 271
ok 272
ok 273
ok 274
ok 275
ok
All tests successful.
Files=4, Tests=325, 6 wallclock secs ( 0.06 usr 0.02 sys + 4.21 cusr 0.99 csys = 5.28 CPU)
Result: PASS
make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-db-gff-perl/
make -j12 install DESTDIR=/build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4'
Manifying 6 pod documents
Manifying 27 pod documents
Manifying 16 pod documents
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Segment.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Typename.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Featname.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Feature.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/RelSegment.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Homol.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_softberry.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_genscan.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_unigene.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_refgene.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/gene.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/processed_transcript.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/orf.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/coding.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/so_transcript.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/clone.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/none.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/transcript.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/alignment.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/match.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_acembly.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch_oracle.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysql.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/iterator.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/oracle.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/iterator.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_meta_gff.1p
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_load_gff.1p
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_generate_histogram.1p
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_genbank2gff.1p
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_fast_load_gff.1p
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_bulk_load_gff.1p
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Typename.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Segment.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::RelSegment.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Homol.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Feature.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Featname.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_unigene.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_twinscan.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_softberry.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_refgene.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_genscan.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_ensgene.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_acembly.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::transcript.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::so_transcript.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::processed_transcript.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::orf.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::none.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::match.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::gene.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::coding.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::clone.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::alignment.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::iterator.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::feature_serializer.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg_fts.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::oracle.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysql.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::iterator.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::caching_handle.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch_oracle.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF.3pm
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_load_gff
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_meta_gff
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_generate_histogram
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_fast_load_gff
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_genbank2gff
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_das_server
Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_bulk_load_gff
make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-db-gff-perl' in '../libbio-db-gff-perl_1.7.4-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../libbio-db-gff-perl_1.7.4-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../libbio-db-gff-perl_1.7.4-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2981559 and its subdirectories
I: Current time: Thu Feb 6 18:34:11 -12 2025
I: pbuilder-time-stamp: 1738910051
Fri Feb 7 06:34:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Fri Feb 7 06:34:13 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Fri Feb 7 06:34:58 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Fri Feb 7 06:34:59 UTC 2025 I: libbio-db-gff-perl_1.7.4-1_arm64.changes:
Format: 1.8
Date: Mon, 13 Jan 2020 13:16:18 +0100
Source: libbio-db-gff-perl
Binary: libbio-db-gff-perl
Architecture: all
Version: 1.7.4-1
Distribution: unstable
Urgency: medium
Maintainer: Michael R. Crusoe <michael.crusoe@gmail.com>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
libbio-db-gff-perl - Storage and retrieval of sequence annotation data
Changes:
libbio-db-gff-perl (1.7.4-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.4.1
Checksums-Sha1:
fb07593d02c31117fc48e5e3fc444a7af8368e69 261204 libbio-db-gff-perl_1.7.4-1_all.deb
f730b5220344544c1aa83c746a9633e63735d5db 7218 libbio-db-gff-perl_1.7.4-1_arm64.buildinfo
Checksums-Sha256:
63d0f9ac4f1437bbaa33442fdf03c2ee644f7dd5486159d4324363a804021ccc 261204 libbio-db-gff-perl_1.7.4-1_all.deb
e91450ce9d8b517717b1504359a5e6c0ff7e75fe678e841f8f057b9e2dde16e9 7218 libbio-db-gff-perl_1.7.4-1_arm64.buildinfo
Files:
6765c954d5fdad969ac00fd02e29b0d7 261204 perl optional libbio-db-gff-perl_1.7.4-1_all.deb
10ad021d0a6e64f362e4aeb245918dee 7218 perl optional libbio-db-gff-perl_1.7.4-1_arm64.buildinfo
Fri Feb 7 06:35:00 UTC 2025 I: diffoscope 287 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_7-56116.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/libbio-db-gff-perl_1.7.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/libbio-db-gff-perl_1.7.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/libbio-db-gff-perl_1.7.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/b1/libbio-db-gff-perl_1.7.4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/b2/libbio-db-gff-perl_1.7.4-1_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 232ms
CPU time consumed: 230ms
Fri Feb 7 06:35:01 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists.
Fri Feb 7 06:35:01 UTC 2025 I: libbio-db-gff-perl from trixie built successfully and reproducibly on arm64.
Fri Feb 7 06:35:02 UTC 2025 I: Submitting .buildinfo files to external archives:
Fri Feb 7 06:35:02 UTC 2025 I: Submitting 8.0K b1/libbio-db-gff-perl_1.7.4-1_arm64.buildinfo.asc
Fri Feb 7 06:35:21 UTC 2025 I: Submitting 8.0K b2/libbio-db-gff-perl_1.7.4-1_arm64.buildinfo.asc
Fri Feb 7 06:35:28 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Feb 7 06:35:28 UTC 2025 I: Done submitting .buildinfo files.
Fri Feb 7 06:35:28 UTC 2025 I: Removing signed libbio-db-gff-perl_1.7.4-1_arm64.buildinfo.asc files:
removed './b1/libbio-db-gff-perl_1.7.4-1_arm64.buildinfo.asc'
removed './b2/libbio-db-gff-perl_1.7.4-1_arm64.buildinfo.asc'