Tue Mar 18 22:34:29 UTC 2025  I: starting to build libbio-samtools-perl/trixie/arm64 on jenkins on '2025-03-18 22:34'
Tue Mar 18 22:34:29 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/79752/console.log
Tue Mar 18 22:34:29 UTC 2025  I: Downloading source for trixie/libbio-samtools-perl=1.43-5
--2025-03-18 22:34:29--  http://deb.debian.org/debian/pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-5.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
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Saving to: ‘libbio-samtools-perl_1.43-5.dsc’

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2025-03-18 22:34:29 (291 MB/s) - ‘libbio-samtools-perl_1.43-5.dsc’ saved [2228/2228]

Tue Mar 18 22:34:29 UTC 2025  I: libbio-samtools-perl_1.43-5.dsc
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Hash: SHA256

Format: 3.0 (quilt)
Source: libbio-samtools-perl
Binary: libbio-samtools-perl
Architecture: any
Version: 1.43-5
Maintainer: Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>
Homepage: https://metacpan.org/release/Bio-SamTools
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl
Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 13), libbam-dev, libbio-perl-perl <!nocheck>, libmodule-build-perl, perl-xs-dev, perl:native, zlib1g-dev
Package-List:
 libbio-samtools-perl deb perl optional arch=any
Checksums-Sha1:
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 9fd7cc61c130c2572d782e1433950b32dbe984d1 9360 libbio-samtools-perl_1.43-5.debian.tar.xz
Checksums-Sha256:
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 51d780410bbdae748dc6ab0d4134872d9ccf7397b4d43583d552afc5d1649865 9360 libbio-samtools-perl_1.43-5.debian.tar.xz
Files:
 d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz
 776ffbac8666f9382a4ae3e8ad76667a 9360 libbio-samtools-perl_1.43-5.debian.tar.xz

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Tue Mar 18 22:34:29 UTC 2025  I: Checking whether the package is not for us
Tue Mar 18 22:34:29 UTC 2025  I: Starting 1st build on remote node codethink03-arm64.debian.net.
Tue Mar 18 22:34:29 UTC 2025  I: Preparing to do remote build '1' on codethink03-arm64.debian.net.
Tue Mar 18 22:35:24 UTC 2025  I: Deleting $TMPDIR on codethink03-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Apr 20 16:57:31 -12 2026
I: pbuilder-time-stamp: 1776747451
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libbio-samtools-perl_1.43-5.dsc]
I: copying [./libbio-samtools-perl_1.43.orig.tar.gz]
I: copying [./libbio-samtools-perl_1.43-5.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./libbio-samtools-perl_1.43-5.dsc: unsupported subcommand
dpkg-source: info: extracting libbio-samtools-perl in libbio-samtools-perl-1.43
dpkg-source: info: unpacking libbio-samtools-perl_1.43.orig.tar.gz
dpkg-source: info: unpacking libbio-samtools-perl_1.43-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying typo.patch
dpkg-source: info: applying 0001-Lift-prototypes-of-bam_view1-and-bam_sort_core-from-.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2537470/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  INVOCATION_ID='39bf12ed3ea74775baa461e67d8e6202'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='2537470'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Oq0pvFkW/pbuilderrc_sZWC --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Oq0pvFkW/b1 --logfile b1/build.log libbio-samtools-perl_1.43-5.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://192.168.101.4:3128'
I: uname -a
  Linux codethink03-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Mar  4  2025 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2537470/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libbam-dev, libbio-perl-perl, libmodule-build-perl, perl-xs-dev, perl:native, zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19899 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on libbam-dev; however:
  Package libbam-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
  Package libbio-perl-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however:
  Package libmodule-build-perl is not installed.
 pbuilder-satisfydepends-dummy depends on perl-xs-dev; however:
  Package perl-xs-dev is not installed.
 pbuilder-satisfydepends-dummy depends on perl:native.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libbio-perl-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libio-string-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-build-perl{a} libperl-dev{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bioperl-run curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libmodule-signature-perl libpod-readme-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 
0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded.
Need to get 25.5 MB of archives. After unpacking 97.3 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
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Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
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Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
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Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 libbam-dev arm64 0.1.19+dfsg-6 [110 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 libio-string-perl all 1.08-4 [12.1 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 libdata-stag-perl all 0.14-3 [448 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 libmodule-build-perl all 0.423400-2 [252 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 libperl-dev arm64 5.40.1-2 [1019 kB]
Fetched 25.5 MB in 0s (61.7 MB/s)
Preconfiguring packages ...
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(Reading database ... 19899 files and directories currently installed.)
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Unpacking libbam-dev (0.1.19+dfsg-6) ...
Selecting previously unselected package libio-string-perl.
Preparing to unpack .../32-libio-string-perl_1.08-4_all.deb ...
Unpacking libio-string-perl (1.08-4) ...
Selecting previously unselected package libdata-stag-perl.
Preparing to unpack .../33-libdata-stag-perl_0.14-3_all.deb ...
Unpacking libdata-stag-perl (0.14-3) ...
Selecting previously unselected package libbio-perl-perl.
Preparing to unpack .../34-libbio-perl-perl_1.7.8-1_all.deb ...
Unpacking libbio-perl-perl (1.7.8-1) ...
Selecting previously unselected package libmodule-build-perl.
Preparing to unpack .../35-libmodule-build-perl_0.423400-2_all.deb ...
Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl'
Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl'
Unpacking libmodule-build-perl (0.423400-2) ...
Selecting previously unselected package libperl-dev:arm64.
Preparing to unpack .../36-libperl-dev_5.40.1-2_arm64.deb ...
Unpacking libperl-dev:arm64 (5.40.1-2) ...
Setting up libpipeline1:arm64 (1.5.8-1) ...
Setting up libicu72:arm64 (72.1-6) ...
Setting up bsdextrautils (2.40.4-5) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libmagic1t64:arm64 (1:5.45-3+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-7) ...
Setting up libperl-dev:arm64 (5.40.1-2) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up libmodule-build-perl (0.423400-2) ...
Setting up libio-string-perl (1.08-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up dwz (0.15-1+b1) ...
Setting up libdata-stag-perl (0.14-3) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up libbio-perl-perl (1.7.8-1) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libbam-dev (0.1.19+dfsg-6) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.41-4) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/libbio-samtools-perl-1.43/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../libbio-samtools-perl_1.43-5_source.changes
dpkg-buildpackage: info: source package libbio-samtools-perl
dpkg-buildpackage: info: source version 1.43-5
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/libbio-samtools-perl-1.43'
SAMTOOLS=/usr/include/samtools dh_auto_configure
	/usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now"
Found /usr/include/samtools/bam.h and //lib/libbam.a.
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Bio-SamTools' version '1.43'
make[1]: Leaving directory '/build/reproducible-path/libbio-samtools-perl-1.43'
   dh_auto_build
	/usr/bin/perl Build
Building Bio-SamTools
aarch64-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE -fPIC '-D_IOLIB=2' '-D_FILE_OFFSET_BITS=64' '-Wformat=0' -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' '-mbranch-protection=standard' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' '-mbranch-protection=standard' -Wdate-time '-D_FORTIFY_SOURCE=2' -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c
aarch64-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE '-DVERSION="1.43"' '-DXS_VERSION="1.43"' -fPIC '-D_IOLIB=2' '-D_FILE_OFFSET_BITS=64' '-Wformat=0' -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' '-mbranch-protection=standard' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' '-mbranch-protection=standard' -Wdate-time '-D_FORTIFY_SOURCE=2' -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs')
aarch64-linux-gnu-gcc -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' '-mbranch-protection=standard' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L//lib -lbam -lpthread -lz
make[1]: Entering directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin'
gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-z,relro -Wl,-z,now -L//lib -lbam -lpthread -lm -lz
make[1]: Leaving directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin'
   dh_auto_test
	/usr/bin/perl Build test --verbose 1
make[1]: Entering directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin'
[fai_load] build FASTA index.
[bam_parse_region] fail to determine the sequence name.
t/01sam.t .. 
1..268
# Running under perl version 5.040001 for linux
# Current time local: Tue Apr 21 04:58:12 2026
# Current time GMT:   Tue Apr 21 04:58:12 2026
# Using Test.pm version 1.31
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ok
All tests successful.
Files=1, Tests=268,  2 wallclock secs ( 0.01 usr  0.01 sys +  0.50 cusr  0.10 csys =  0.62 CPU)
Result: PASS
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/libbio-samtools-perl/
	/usr/bin/perl Build install --destdir /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl --create_packlist 0
Building Bio-SamTools
make[1]: Entering directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin'
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/Bio/DB/Sam/Sam.so
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/Bio/DB/Sam/Sam.bs
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/bam2bedgraph
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Sam.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Sam/Segment.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Sam/SamToGBrowse.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Sam/Constants.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/Target.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/ReadIterator.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/Query.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/PileupWrapper.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/Pileup.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/FetchIterator.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/Alignment.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/AlignWrapper.pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl
Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_lintian
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-5_arm64.deb'.
dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in '../libbio-samtools-perl-dbgsym_1.43-5_arm64.deb'.
 dpkg-genbuildinfo --build=binary -O../libbio-samtools-perl_1.43-5_arm64.buildinfo
 dpkg-genchanges --build=binary -O../libbio-samtools-perl_1.43-5_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/2537470 and its subdirectories
I: Current time: Mon Apr 20 16:58:22 -12 2026
I: pbuilder-time-stamp: 1776747502
Tue Mar 18 22:35:24 UTC 2025  I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net.
Tue Mar 18 22:35:24 UTC 2025  I: Preparing to do remote build '2' on codethink04-arm64.debian.net.
Tue Mar 18 22:35:58 UTC 2025  I: Deleting $TMPDIR on codethink04-arm64.debian.net.
Tue Mar 18 22:35:59 UTC 2025  I: libbio-samtools-perl_1.43-5_arm64.changes:
Format: 1.8
Date: Tue, 12 Mar 2024 22:11:21 +0100
Source: libbio-samtools-perl
Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym
Architecture: arm64
Version: 1.43-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing
Closes: 1065759
Changes:
 libbio-samtools-perl (1.43-5) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Niko Tyni ]
   * Add missing prototypes
     Closes: #1065759
 .
   [ Andreas Tille ]
   * Remove trailing whitespace in debian/changelog (routine-update)
Checksums-Sha1:
 de32aab419b789789399bdaad24a8a65fb3cca9e 109780 libbio-samtools-perl-dbgsym_1.43-5_arm64.deb
 775d4b79f7d5ce3d3bb3c24a0f81390ae056f5cb 5200 libbio-samtools-perl_1.43-5_arm64.buildinfo
 1b18c3a621afff5ad6b7f438636324ce8df17088 169760 libbio-samtools-perl_1.43-5_arm64.deb
Checksums-Sha256:
 cafffff0ee27e0e3c1e2b62d009122e1bfd6a30e8da079bf3d1a0e697189f281 109780 libbio-samtools-perl-dbgsym_1.43-5_arm64.deb
 09d32a1803f4afb4fbd8481fa5f98717b5b2a82ad5900d0d14a270b5a6692587 5200 libbio-samtools-perl_1.43-5_arm64.buildinfo
 b100fa808e2cde4080cdfc568a47a6618aef954e26ecb23db76a7ccf5eecf1e2 169760 libbio-samtools-perl_1.43-5_arm64.deb
Files:
 70aa812cb055475aea19abb1589e3539 109780 debug optional libbio-samtools-perl-dbgsym_1.43-5_arm64.deb
 e934465c351d68b9bfdd75225d8acd73 5200 perl optional libbio-samtools-perl_1.43-5_arm64.buildinfo
 a5ce3cbbedc2fc52d00a52abb758a6cb 169760 perl optional libbio-samtools-perl_1.43-5_arm64.deb
Tue Mar 18 22:36:00 UTC 2025  I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_2-79752.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Oq0pvFkW/libbio-samtools-perl_1.43-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Oq0pvFkW/libbio-samtools-perl_1.43-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Oq0pvFkW/libbio-samtools-perl_1.43-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Oq0pvFkW/b1/libbio-samtools-perl_1.43-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Oq0pvFkW/b2/libbio-samtools-perl_1.43-5_arm64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile

## main (total time: 0.003s)
       0.003s      2 calls    outputs
       0.000s      1 call     cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 227ms
CPU time consumed: 227ms
Tue Mar 18 22:36:01 UTC 2025  I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Tue Mar 18 22:36:01 UTC 2025  I: libbio-samtools-perl from trixie built successfully and reproducibly on arm64.
Tue Mar 18 22:36:02 UTC 2025  I: Submitting .buildinfo files to external archives:
Tue Mar 18 22:36:02 UTC 2025  I: Submitting 8.0K	b1/libbio-samtools-perl_1.43-5_arm64.buildinfo.asc
Tue Mar 18 22:36:03 UTC 2025  I: Submitting 8.0K	b2/libbio-samtools-perl_1.43-5_arm64.buildinfo.asc
Tue Mar 18 22:36:03 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Tue Mar 18 22:36:03 UTC 2025  I: Done submitting .buildinfo files.
Tue Mar 18 22:36:03 UTC 2025  I: Removing signed libbio-samtools-perl_1.43-5_arm64.buildinfo.asc files:
removed './b1/libbio-samtools-perl_1.43-5_arm64.buildinfo.asc'
removed './b2/libbio-samtools-perl_1.43-5_arm64.buildinfo.asc'