Sun Mar 2 13:08:10 UTC 2025 I: starting to build mapdamage/trixie/arm64 on jenkins on '2025-03-02 13:07'
Sun Mar 2 13:08:10 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/83980/console.log
Sun Mar 2 13:08:10 UTC 2025 I: Downloading source for trixie/mapdamage=2.2.2+dfsg-1
--2025-03-02 13:08:11-- http://deb.debian.org/debian/pool/main/m/mapdamage/mapdamage_2.2.2%2bdfsg-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2396 (2.3K) [text/prs.lines.tag]
Saving to: ‘mapdamage_2.2.2+dfsg-1.dsc’
0K .. 100% 412M=0s
2025-03-02 13:08:11 (412 MB/s) - ‘mapdamage_2.2.2+dfsg-1.dsc’ saved [2396/2396]
Sun Mar 2 13:08:11 UTC 2025 I: mapdamage_2.2.2+dfsg-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: mapdamage
Binary: mapdamage
Architecture: all
Version: 2.2.2+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://ginolhac.github.io/mapDamage/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/mapdamage
Vcs-Git: https://salsa.debian.org/med-team/mapdamage.git
Testsuite: autopkgtest
Testsuite-Triggers: gfortran, r-cran-runit
Build-Depends: debhelper-compat (= 13), python3, dh-python, python3-setuptools, python3-pysam <!nocheck>, seqtk <!nocheck>, r-base-core <!nocheck>, r-cran-gam <!nocheck>, r-cran-ggplot2 <!nocheck>, r-cran-inline <!nocheck>
Package-List:
mapdamage deb science optional arch=all
Checksums-Sha1:
174ba18693f2e4d160f3033fa0afc56432768350 36208 mapdamage_2.2.2+dfsg.orig.tar.xz
9723e135bf2a567898b017ef64a6a6b136306915 7824 mapdamage_2.2.2+dfsg-1.debian.tar.xz
Checksums-Sha256:
6fb12f1401138dabebc637ffa11131f511113f63a8eda50e0e62e977552ef896 36208 mapdamage_2.2.2+dfsg.orig.tar.xz
d894df2bf45f691b5798d6ffdaa6c635620a389e5f73a8c73666882ca45fd82b 7824 mapdamage_2.2.2+dfsg-1.debian.tar.xz
Files:
9c7daa5b50ad1f6c67482a0ad5083a18 36208 mapdamage_2.2.2+dfsg.orig.tar.xz
7813a454144adcbb0b01cfdd618cb47c 7824 mapdamage_2.2.2+dfsg-1.debian.tar.xz
Dgit: 3b3215985c9af2593201a549aefba15b22f276b0 debian archive/debian/2.2.2+dfsg-1 https://git.dgit.debian.org/mapdamage
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Sun Mar 2 13:08:11 UTC 2025 I: Checking whether the package is not for us
Sun Mar 2 13:08:11 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net.
Sun Mar 2 13:08:11 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Sun Mar 2 13:09:21 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Mar 2 01:08:13 -12 2025
I: pbuilder-time-stamp: 1740920893
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [mapdamage_2.2.2+dfsg-1.dsc]
I: copying [./mapdamage_2.2.2+dfsg.orig.tar.xz]
I: copying [./mapdamage_2.2.2+dfsg-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./mapdamage_2.2.2+dfsg-1.dsc: unsupported subcommand
dpkg-source: info: extracting mapdamage in mapdamage-2.2.2+dfsg
dpkg-source: info: unpacking mapdamage_2.2.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking mapdamage_2.2.2+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_seqtk.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3236156/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='d0dfe42975174de998f42b9b4e250178'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3236156'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RDul23aE/pbuilderrc_lXfB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RDul23aE/b1 --logfile b1/build.log mapdamage_2.2.2+dfsg-1.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3236156/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), python3, dh-python, python3-setuptools, python3-pysam, seqtk, r-base-core, r-cran-gam, r-cran-ggplot2, r-cran-inline
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19916 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-pysam; however:
Package python3-pysam is not installed.
pbuilder-satisfydepends-dummy depends on seqtk; however:
Package seqtk is not installed.
pbuilder-satisfydepends-dummy depends on r-base-core; however:
Package r-base-core is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-gam; however:
Package r-cran-gam is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however:
Package r-cran-ggplot2 is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-inline; however:
Package r-cran-inline is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libice6{a} libicu72{a} libidn2-0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-pysam{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} r-base-core{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-fansi{a} r-cran-farver{a} r-cran-foreach{a} r-cran-gam{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-inline{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rlang{a} r-cran-scales{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} seqtk{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a}
The following packages are RECOMMENDED but will NOT be installed:
curl krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-base-dev r-cran-bench r-cran-bit64 r-cran-blob r-cran-brio r-cran-callr r-cran-covr r-cran-crayon r-cran-dbi r-cran-diagrammer r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-formattable r-cran-fs r-cran-generics r-cran-here r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-interp r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-nanotime r-cran-palmerpenguins r-cran-pkgbuild r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-profvis r-cran-ps r-cran-purrr r-cran-quantreg r-cran-ragg r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-stringi r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyr r-cran-tidyverse r-cran-unitizer r-cran-units r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 177 newly installed, 0 to remove and 0 not upgraded.
Need to get 112 MB of archives. After unpacking 313 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.2-1 [27.1 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 12.0.0 [28.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.2-1 [10.0 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.2-1 [28.1 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.4.1-1 [1390 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20241223 [164 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B]
Get: 30 http://deb.debian.org/debian trixie/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get: 31 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0050 [42.7 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 38 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 39 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 40 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 41 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 42 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 43 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 44 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 45 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 46 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 47 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB]
Get: 48 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 49 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 50 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 51 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Get: 52 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 53 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB]
Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB]
Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.8.0-1 [724 kB]
Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB]
Get: 64 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB]
Get: 65 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.47-1 [274 kB]
Get: 66 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 67 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 68 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 69 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB]
Get: 70 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB]
Get: 71 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-2 [462 kB]
Get: 72 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.1-2 [104 kB]
Get: 73 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 74 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 75 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 76 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 77 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 78 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 79 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 80 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 81 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 82 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB]
Get: 83 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 84 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 85 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 86 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 87 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Get: 88 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get: 89 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 90 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 91 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 92 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 93 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 94 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 95 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 96 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 97 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 98 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 99 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Get: 100 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Get: 101 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 102 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 103 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 104 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.12.1-3 [336 kB]
Get: 105 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-3 [339 kB]
Get: 106 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB]
Get: 107 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 108 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB]
Get: 109 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB]
Get: 110 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.83.4-1 [1422 kB]
Get: 111 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 112 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB]
Get: 113 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB]
Get: 114 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB]
Get: 115 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB]
Get: 116 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB]
Get: 117 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 118 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3.1 [173 kB]
Get: 119 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB]
Get: 120 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 121 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB]
Get: 122 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB]
Get: 123 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.56.1-1 [213 kB]
Get: 124 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [52.8 kB]
Get: 125 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [33.8 kB]
Get: 126 http://deb.debian.org/debian trixie/main arm64 libpaper2 arm64 2.2.5-0.3+b1 [16.6 kB]
Get: 127 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 2.2.5-0.3+b1 [16.3 kB]
Get: 128 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB]
Get: 129 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB]
Get: 130 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB]
Get: 131 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB]
Get: 132 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get: 133 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 134 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get: 135 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB]
Get: 136 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB]
Get: 137 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB]
Get: 138 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB]
Get: 139 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.23.0+ds-1+b1 [3417 kB]
Get: 140 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB]
Get: 141 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB]
Get: 142 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 143 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB]
Get: 144 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB]
Get: 145 http://deb.debian.org/debian trixie/main arm64 r-cran-codetools all 0.2-20-1 [91.1 kB]
Get: 146 http://deb.debian.org/debian trixie/main arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1713 kB]
Get: 147 http://deb.debian.org/debian trixie/main arm64 r-cran-fansi arm64 1.0.5-1+b1 [626 kB]
Get: 148 http://deb.debian.org/debian trixie/main arm64 r-cran-farver arm64 2.1.2-1+b1 [1397 kB]
Get: 149 http://deb.debian.org/debian trixie/main arm64 r-cran-iterators all 1.0.14-1 [337 kB]
Get: 150 http://deb.debian.org/debian trixie/main arm64 r-cran-foreach all 1.5.2-1 [122 kB]
Get: 151 http://deb.debian.org/debian trixie/main arm64 r-cran-gam arm64 1.22-5-1 [387 kB]
Get: 152 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.8.0-1 [165 kB]
Get: 153 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.5-1 [1706 kB]
Get: 154 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get: 155 http://deb.debian.org/debian trixie/main arm64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB]
Get: 156 http://deb.debian.org/debian trixie/main arm64 r-cran-isoband arm64 0.2.7-1+b1 [1614 kB]
Get: 157 http://deb.debian.org/debian trixie/main arm64 r-cran-mass arm64 7.3-64-1 [1112 kB]
Get: 158 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB]
Get: 159 http://deb.debian.org/debian trixie/main arm64 r-cran-nlme arm64 3.1.167-1 [2327 kB]
Get: 160 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.7-2-1 [4040 kB]
Get: 161 http://deb.debian.org/debian trixie/main arm64 r-cran-mgcv arm64 1.9-1-1+b1 [3218 kB]
Get: 162 http://deb.debian.org/debian trixie/main arm64 r-cran-labeling all 0.4.3-1 [62.4 kB]
Get: 163 http://deb.debian.org/debian trixie/main arm64 r-cran-munsell all 0.5.1-1 [237 kB]
Get: 164 http://deb.debian.org/debian trixie/main arm64 r-cran-r6 all 2.6.1-1 [106 kB]
Get: 165 http://deb.debian.org/debian trixie/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get: 166 http://deb.debian.org/debian trixie/main arm64 r-cran-viridislite all 0.4.2-2 [1299 kB]
Get: 167 http://deb.debian.org/debian trixie/main arm64 r-cran-scales all 1.3.0-1 [677 kB]
Get: 168 http://deb.debian.org/debian trixie/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB]
Get: 169 http://deb.debian.org/debian trixie/main arm64 r-cran-utf8 arm64 1.2.4-1+b1 [133 kB]
Get: 170 http://deb.debian.org/debian trixie/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB]
Get: 171 http://deb.debian.org/debian trixie/main arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
Get: 172 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get: 173 http://deb.debian.org/debian trixie/main arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [425 kB]
Get: 174 http://deb.debian.org/debian trixie/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get: 175 http://deb.debian.org/debian trixie/main arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB]
Get: 176 http://deb.debian.org/debian trixie/main arm64 r-cran-inline all 0.3.21-1 [132 kB]
Get: 177 http://deb.debian.org/debian trixie/main arm64 seqtk arm64 1.4-2+b1 [33.0 kB]
Fetched 112 MB in 1s (178 MB/s)
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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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invoke-rc.d: could not determine current runlevel
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Current default time zone: 'Etc/UTC'
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Run 'dpkg-reconfigure tzdata' if you wish to change it.
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update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
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Regenerating fonts cache... done.
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-jaraco.text (4.0.0-1) ...
Setting up r-base-core (4.4.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-labeling (0.4.3-1) ...
Setting up r-cran-lattice (0.22-6-1+b1) ...
Setting up r-cran-nlme (3.1.167-1) ...
Setting up r-cran-farver (2.1.2-1+b1) ...
Setting up r-cran-viridislite (0.4.2-2) ...
Setting up libhts3t64:arm64 (1.21+ds-1) ...
Setting up r-cran-r6 (2.6.1-1) ...
Setting up r-cran-magrittr (2.0.3-1+b1) ...
Setting up python3-pkg-resources (75.8.0-1) ...
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Setting up r-cran-inline (0.3.21-1) ...
Setting up r-cran-rlang (1.1.5-1) ...
Setting up python3-pysam (0.23.0+ds-1+b1) ...
Setting up python3-setuptools (75.8.0-1) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up r-cran-iterators (1.0.14-1) ...
Setting up r-cran-foreach (1.5.2-1) ...
Setting up r-cran-fansi (1.0.5-1+b1) ...
Setting up r-cran-mass (7.3-64-1) ...
Setting up r-cran-glue (1.8.0-1) ...
Setting up r-cran-gam (1.22-5-1) ...
Setting up r-cran-cli (3.6.3-1) ...
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Setting up r-cran-utf8 (1.2.4-1+b1) ...
Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-cran-isoband (0.2.7-1+b1) ...
Setting up r-cran-gtable (0.3.6+dfsg-1) ...
Setting up r-cran-matrix (1.7-2-1) ...
Setting up r-cran-mgcv (1.9-1-1+b1) ...
Setting up r-cran-vctrs (0.6.5-1+b1) ...
Setting up r-cran-pillar (1.10.1+dfsg-1) ...
Setting up dh-python (6.20250108) ...
Setting up r-cran-munsell (0.5.1-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-3) ...
Setting up r-cran-scales (1.3.0-1) ...
Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
Processing triggers for libc-bin (2.40-7) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/mapdamage-2.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mapdamage_2.2.2+dfsg-1_source.changes
dpkg-buildpackage: info: source package mapdamage
dpkg-buildpackage: info: source version 2.2.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_auto_clean
I: pybuild base:311: python3.13 setup.py clean
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
rm -f mapdamage/_version.py
rm -f mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Length_plot.pdf mapdamage/tests/results/Length_plot.pdf
rm -f mapdamage/tests/fake1.fasta.fai mapdamage/tests/results/3pGtoA_freq.txt mapdamage/tests/results/5pCtoT_freq.txt mapdamage/tests/results/Runtime_log.txt mapdamage/tests/results/dnacomp.txt mapdamage/tests/results/lgdistribution.txt mapdamage/tests/results/misincorporation.txt mapdamage/tests/test.rescaled.sam
make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
cd mapdamage && \
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/build/reproducible-path/mapdamage-2.2.2+dfsg/bin \
PYTHONPATH=/build/reproducible-path/mapdamage-2.2.2+dfsg/.pybuild/cpython3_3.13/build \
python3 mp_test.py
Started with the command: /build/reproducible-path/mapdamage-2.2.2+dfsg/bin/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats
additional tests/results/Length_plot.pdf generated
Successful run
Missing the following R libraries 'Rcpp' and 'RcppGSL'
The Bayesian estimation has been disabled
Reading from 'tests/test.bam'
Writing results to 'tests/results/'
pdf tests/results/Fragmisincorporation_plot.pdf generated
..
----------------------------------------------------------------------
Ran 2 tests in 3.100s
OK
make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/mapdamage/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/mapdamage-2.2.2+dfsg/debian/mapdamage
dh_install -O--buildsystem=pybuild
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_python3 --no-ext-rename
make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
debian/rules override_dh_fixperms
make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_fixperms
find debian -name checkLibraries.R -exec chmod +x \{\} \;
find debian -name runGeneral.R -exec chmod +x \{\} \;
make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'mapdamage' in '../mapdamage_2.2.2+dfsg-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../mapdamage_2.2.2+dfsg-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../mapdamage_2.2.2+dfsg-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3236156 and its subdirectories
I: Current time: Sun Mar 2 01:09:20 -12 2025
I: pbuilder-time-stamp: 1740920960
Sun Mar 2 13:09:22 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Sun Mar 2 13:09:22 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Sun Mar 2 13:12:22 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Sun Mar 2 13:12:23 UTC 2025 I: mapdamage_2.2.2+dfsg-1_arm64.changes:
Format: 1.8
Date: Sun, 25 Aug 2024 18:37:56 +0200
Source: mapdamage
Binary: mapdamage
Architecture: all
Version: 2.2.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
mapdamage - tracking and quantifying damage patterns in ancient DNA sequences
Changes:
mapdamage (2.2.2+dfsg-1) unstable; urgency=medium
.
* New upstream version 2.2.2+dfsg
* use_debian_packaged_seqtk.patch: unfuzz.
* d/control: add myself to uploaders.
* d/control: declare compliance to standards version 4.7.0.
* use_debian_packaged_seqtk.patch: declare forwarding not-needed.
Checksums-Sha1:
990ecb93e0207867a8dfd46016b43456f5fda063 42164 mapdamage_2.2.2+dfsg-1_all.deb
b91047107fea064d5c67aed0b0211639a2540b92 9069 mapdamage_2.2.2+dfsg-1_arm64.buildinfo
Checksums-Sha256:
66902bae1258ee39aeea143aa120c91194429fe45a2ab58ebfcac2f09b3e0858 42164 mapdamage_2.2.2+dfsg-1_all.deb
7fab99c3683a45ba1b65d71eb556a650d9e63079fd4e4d1be6c590912e0fb61d 9069 mapdamage_2.2.2+dfsg-1_arm64.buildinfo
Files:
c0c6479739b287299e921f1561aafbc1 42164 science optional mapdamage_2.2.2+dfsg-1_all.deb
693d89df207fd786a6d1253ee0787cc5 9069 science optional mapdamage_2.2.2+dfsg-1_arm64.buildinfo
Sun Mar 2 13:12:24 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_12-83980.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RDul23aE/mapdamage_2.2.2+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RDul23aE/mapdamage_2.2.2+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RDul23aE/mapdamage_2.2.2+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RDul23aE/b1/mapdamage_2.2.2+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RDul23aE/b2/mapdamage_2.2.2+dfsg-1_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 237ms
CPU time consumed: 229ms
Sun Mar 2 13:12:24 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Sun Mar 2 13:12:24 UTC 2025 I: mapdamage from trixie built successfully and reproducibly on arm64.
Sun Mar 2 13:12:26 UTC 2025 I: Submitting .buildinfo files to external archives:
Sun Mar 2 13:12:26 UTC 2025 I: Submitting 12K b1/mapdamage_2.2.2+dfsg-1_arm64.buildinfo.asc
Sun Mar 2 13:12:28 UTC 2025 I: Submitting 12K b2/mapdamage_2.2.2+dfsg-1_arm64.buildinfo.asc
Sun Mar 2 13:12:29 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sun Mar 2 13:12:29 UTC 2025 I: Done submitting .buildinfo files.
Sun Mar 2 13:12:29 UTC 2025 I: Removing signed mapdamage_2.2.2+dfsg-1_arm64.buildinfo.asc files:
removed './b1/mapdamage_2.2.2+dfsg-1_arm64.buildinfo.asc'
removed './b2/mapdamage_2.2.2+dfsg-1_arm64.buildinfo.asc'