Sat Mar 1 02:04:34 UTC 2025 I: starting to build mrtrix3/trixie/arm64 on jenkins on '2025-03-01 02:04' Sat Mar 1 02:04:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/76443/console.log Sat Mar 1 02:04:34 UTC 2025 I: Downloading source for trixie/mrtrix3=3.0.4-1 --2025-03-01 02:04:34-- http://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2364 (2.3K) [text/prs.lines.tag] Saving to: ‘mrtrix3_3.0.4-1.dsc’ 0K .. 100% 364M=0s 2025-03-01 02:04:34 (364 MB/s) - ‘mrtrix3_3.0.4-1.dsc’ saved [2364/2364] Sat Mar 1 02:04:34 UTC 2025 I: mrtrix3_3.0.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mrtrix3 Binary: mrtrix3, mrtrix3-doc Architecture: any-amd64 arm64 all Version: 3.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Michael Hanke , Yaroslav Halchenko , Étienne Mollier Homepage: https://www.mrtrix.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/mrtrix3 Vcs-Git: https://salsa.debian.org/med-team/mrtrix3.git Build-Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkg-config, imagemagick, libtiff-dev, matlab-support-dev, bc Package-List: mrtrix3 deb science optional arch=any-amd64,arm64 mrtrix3-doc deb doc optional arch=all Checksums-Sha1: e19c1c6e36e808dcbee2d3299b2c2313c860ee38 2551340 mrtrix3_3.0.4.orig.tar.gz 3167b9fd7957b9caef294b1215971e299f6f3b7f 9652 mrtrix3_3.0.4-1.debian.tar.xz Checksums-Sha256: f1d1aa289cfc3e46e3a8eca93594b23d061c6d50a0cd03727433a7e2cd14f71a 2551340 mrtrix3_3.0.4.orig.tar.gz fae513ffec0fe598cde595c869b88afc2dc6cb1bc19999f5ed3bd6b03519d412 9652 mrtrix3_3.0.4-1.debian.tar.xz Files: 7ef7e572afc3008f283cf534530f6d97 2551340 mrtrix3_3.0.4.orig.tar.gz a98a9097b966bdd08417e291d0beaacd 9652 mrtrix3_3.0.4-1.debian.tar.xz Dgit: 1ca687099353fd3aa64c2680aa6c8bdfed083a20 debian archive/debian/3.0.4-1 https://git.dgit.debian.org/mrtrix3 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTWTcgUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpyBhAAn9AASsUacO+mkMdrfZsYwDnMj+oT +0b1XMYJg5TCIkeOLJ5EY5CIYLn0kFOTPV+UyBcdMDAuoBxTod1cA872iv9n6GJq vQDe1taiRgeOd+QrucWEe2WCX9xnco/rAHrQlC1H+K+WE/UlAoaFAg3u6tzOuUA2 yhyv3gD+BQNZqCvsFuL5j1pNWFS29Wg7rr7+0RAsW6IsgRaAzlDdmzF0NFa7MIdb /8GSMur6X8l0dwzrVGmA/EyWBetSgj9iiiXE1gmJc6yCZqBZhzxNlz/gIou4WWbT sqG4Joy8zNvn9mroB4T5NQK6x3PBKE8YPT2jjsv3SJiO1Uhcd11NEMJYnhTharnU Rm4dFDTr99jsB52vngsxHMSOwAcqVq4iMLgoL+bX4fAVBmxnKl/DWKYepwCk5ewP 9exWZKOdgiDsGzBwj7Uk3xRINOyQf7MwWToa5JHP0HK+zN13HW1CAPQQALIkvUYA XqjQlNbNCQVcX1ZO7yIyoGMbTRXKsVZuMUE9gtjO3qEpaVwxc13Iqn0kAQWDtVfc z9V1ldMa+37e5tF1STDC2LqQUU8YjqO1+ftrcD6w2AY4pazMgKuPMhdMgcGrkWvT UoOH8XJIot//fDP97yneiYd6LDkl78FRbGe+VVTTyC/RZy+y3Gwx1E/eC+lTCxFp ZTKpw2IIeBzFYiQ= =msa5 -----END PGP SIGNATURE----- Sat Mar 1 02:04:34 UTC 2025 I: Checking whether the package is not for us Sat Mar 1 02:04:34 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Mar 1 02:04:34 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Mar 1 02:33:38 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 2 20:27:36 -12 2026 I: pbuilder-time-stamp: 1775204856 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mrtrix3_3.0.4-1.dsc] I: copying [./mrtrix3_3.0.4.orig.tar.gz] I: copying [./mrtrix3_3.0.4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mrtrix3_3.0.4-1.dsc: unsupported subcommand dpkg-source: info: extracting mrtrix3 in mrtrix3-3.0.4 dpkg-source: info: unpacking mrtrix3_3.0.4.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch dpkg-source: info: applying mrtrix_version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3484005/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ca3ad1686beb4770b4e96acc3e9f66dc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3484005' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RHBZH1Mu/pbuilderrc_BMIS --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RHBZH1Mu/b1 --logfile b1/build.log mrtrix3_3.0.4-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3484005/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkg-config, imagemagick, libtiff-dev, matlab-support-dev, bc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19916 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on octave-dev; however: Package octave-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev; however: Package libqt5opengl5-dev is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5svg5-dev; however: Package libqt5svg5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. pbuilder-satisfydepends-dummy depends on matlab-support-dev; however: Package matlab-support-dev is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} hdf5-helpers{a} hicolor-icon-theme{a} imagemagick{a} imagemagick-7-common{a} imagemagick-7.q16{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libamd3{a} libarchive-zip-perl{a} libarpack2t64{a} libasound2-data{a} libasound2t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb2-1{a} libblas-dev{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libduktape207{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libflac14{a} libfltk-gl1.3t64{a} libfltk1.3t64{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgif7{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglapi-mesa{a} libglib2.0-0t64{a} libglpk40{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphicsmagick++-q16-12t64{a} libgraphicsmagick-q16-3t64{a} libgraphite2-3{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhwy1t64{a} libice6{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libimath-3-1-29t64{a} libinput-bin{a} libinput10{a} libjack-jackd2-0{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjxl0.10{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-dev{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm19{a} liblqr-1-0{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-7.q16-10{a} libmagickwand-7.q16-10{a} libmd4c0{a} libmp3lame0{a} libmpg123-0t64{a} libmtdev1t64{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libogg0{a} libopenexr-3-1-30{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopus0{a} libp11-kit-dev{a} libp11-kit0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpng16-16t64{a} libportaudio2{a} libproc2-0{a} libproxy1v5{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libqrupdate1{a} libqscintilla2-qt6-15{a} libqscintilla2-qt6-l10n{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5svg5{a} libqt5svg5-dev{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libqt6core5compat6{a} libqt6core6t64{a} libqt6dbus6{a} libqt6gui6{a} libqt6help6{a} libqt6network6{a} libqt6opengl6{a} libqt6openglwidgets6{a} libqt6printsupport6{a} libqt6sql6{a} libqt6widgets6{a} libqt6xml6{a} libraw23t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsamplerate0{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libsndfile1{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparseconfig7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libts0t64{a} libuchardet0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libvorbis0a{a} libvorbisenc2{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwmflite-0.2-7{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-cursor0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcursor1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxft2{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} matlab-support-dev{a} media-types{a} mesa-libgallium{a} netbase{a} nettle-dev{a} octave{a} octave-common{a} octave-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tex-common{a} texinfo{a} texinfo-lib{a} tzdata{a} ucf{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf ca-certificates curl dbus default-jre-headless epstool fonts-freefont-otf fonts-urw-base35 ghostscript gnuplot-nox gnuplot-qt gnuplot-x11 krb5-locales libarchive-cpio-perl libblis4 libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libldap-common libltdl-dev libmagickcore-7.q16-10-extra libmail-sendmail-perl libopenblas0 libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt6sql6-ibase libqt6sql6-mysql libqt6sql6-odbc libqt6sql6-psql libqt6sql6-sqlite libsasl2-modules libtasn1-doc libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx mesa-vulkan-drivers netpbm octave-doc psmisc pstoedit publicsuffix qt5-gtk-platformtheme qt6-gtk-platformtheme qt6-qpa-plugins qt6-svg-plugins qt6-translations-l10n qt6-wayland qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 374 newly installed, 0 to remove and 0 not upgraded. Need to get 189 MB of archives. After unpacking 832 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.47-1 [274 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-dav1d arm64 1.19.5-1+b1 [11.5 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-libde265 arm64 1.19.5-1+b1 [15.4 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libheif1 arm64 1.19.5-1+b1 [438 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3.1 [173 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.83.4-1 [1422 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b2 [27.0 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libltdl7 arm64 2.5.4-3 [415 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libraw23t64 arm64 0.21.3-1+b1 [370 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [67.4 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libmagickcore-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [1647 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libmagickwand-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [268 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.2-1 [27.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 media-types all 12.0.0 [28.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.2-1 [10.0 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.2-1 [28.1 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 67 http://deb.debian.org/debian trixie/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 68 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0050 [42.7 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 83 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 96 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-2 [462 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-16 [418 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-16 [9795 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-16 [13.6 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 108 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 109 http://deb.debian.org/debian trixie/main arm64 hdf5-helpers arm64 1.14.5+repack-3 [26.6 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 imagemagick-7.q16 arm64 8:7.1.1.43+dfsg1-1 [726 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 imagemagick arm64 8:7.1.1.43+dfsg1-1 [20.0 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 116 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 125 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1+b1 [20.2 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-3 [23.8 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libamd3 arm64 1:7.8.3+dfsg-3 [38.2 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libarpack2t64 arm64 3.9.1-4 [83.7 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libasound2-data all 1.2.13-1 [21.1 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libasound2t64 arm64 1.2.13-1+b1 [338 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libavahi-common-data arm64 0.8-16 [112 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libavahi-common3 arm64 0.8-16 [43.3 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libdbus-1-3 arm64 1.16.0-1 [168 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libavahi-client3 arm64 0.8-16 [46.7 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libb2-1 arm64 0.98.1-1.1+b2 [16.3 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.1-2 [111 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libcamd3 arm64 1:7.8.3+dfsg-3 [35.3 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libccolamd3 arm64 1:7.8.3+dfsg-3 [37.8 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-3 [31.6 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libcholmod5 arm64 1:7.8.3+dfsg-3 [537 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libcups2t64 arm64 2.4.10-2+b1 [236 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.12.1-2 [336 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.6.0-2 [86.5 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.9-2 [452 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2 [452 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.9-2 [1419 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.4.1-1 [3232 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.12.1-2 [468 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 libcxsparse4 arm64 1:7.8.3+dfsg-3 [75.9 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.23-1+b1 [51.4 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 libdouble-conversion3 arm64 3.3.1-1 [37.3 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 libdrm-common all 2.4.123-1 [8084 B] Get: 190 http://deb.debian.org/debian trixie/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 libduktape207 arm64 2.7.0-2+b2 [127 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libwayland-server0 arm64 1.23.1-3 [33.7 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 libglapi-mesa arm64 24.3.4-3 [48.2 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 libllvm19 arm64 1:19.1.7-1+b1 [23.3 MB] Get: 200 http://deb.debian.org/debian trixie/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 libsensors5 arm64 1:3.6.0-10+b1 [34.3 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [241 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 libxshmfence1 arm64 1.3-1+b3 [9104 B] Get: 209 http://deb.debian.org/debian trixie/main arm64 mesa-libgallium arm64 24.3.4-3 [7910 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 libgbm1 arm64 24.3.4-3 [43.2 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 libwayland-client0 arm64 1.23.1-3 [26.1 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 libegl-mesa0 arm64 24.3.4-3 [120 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b4 [19.2 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 libvulkan1 arm64 1.4.304.0-1 [126 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 libgl1-mesa-dri arm64 24.3.4-3 [44.8 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 libglx-mesa0 arm64 24.3.4-3 [142 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 libx11-dev arm64 2:1.8.10-2 [877 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 libegl-dev arm64 1.7.0-1+b2 [19.5 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 libevdev2 arm64 1.13.3+dfsg-1 [30.6 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 libfftw3-long3 arm64 3.3.10-2+b1 [546 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 libfftw3-single3 arm64 3.3.10-2+b1 [517 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 libfftw3-bin arm64 3.3.10-2+b1 [44.3 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 libfftw3-dev arm64 3.3.10-2+b1 [1280 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 libogg0 arm64 1.3.5-3+b2 [23.6 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 libflac14 arm64 1.5.0+ds-2 [180 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 libxfixes3 arm64 1:6.0.0-2+b4 [20.5 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 libxcursor1 arm64 1:1.2.3-1 [39.3 kB] Get: 243 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 libxinerama1 arm64 2:1.1.4-3+b3 [16.1 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 libfltk1.3t64 arm64 1.3.8-6.1+b1 [520 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 libfltk-gl1.3t64 arm64 1.3.8-6.1+b1 [59.7 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 libgif7 arm64 5.2.2-1+b1 [44.2 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2+b1 [37.0 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 libglpk40 arm64 5.0-1+b2 [346 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 libglu1-mesa arm64 9.0.2-1.1+b3 [162 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B] Get: 253 http://deb.debian.org/debian trixie/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b3 [203 kB] Get: 254 http://deb.debian.org/debian trixie/main arm64 libhwy1t64 arm64 1.2.0-2+b2 [499 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 libimath-3-1-29t64 arm64 3.1.12-1+b3 [38.0 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 libopenexr-3-1-30 arm64 3.1.5-5.1+b4 [856 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 libjxl0.10 arm64 0.10.4-2 [854 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 libwmflite-0.2-7 arm64 0.2.13-1.1+b3 [72.0 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 libgraphicsmagick-q16-3t64 arm64 1.4+really1.3.45-1+b2 [1079 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 libgraphicsmagick++-q16-12t64 arm64 1.4+really1.3.45-1+b2 [118 kB] Get: 261 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 libgudev-1.0-0 arm64 238-6 [13.7 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [121 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [110 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [42.1 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [24.4 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3.1 [293 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3.1 [72.0 kB] Get: 275 http://deb.debian.org/debian trixie/main arm64 libhdf5-dev arm64 1.14.5+repack-3 [3225 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 libwacom-common all 2.14.0-1 [103 kB] Get: 279 http://deb.debian.org/debian trixie/main arm64 libwacom9 arm64 2.14.0-1 [24.2 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 libinput-bin arm64 1.27.1-1 [26.1 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 libmtdev1t64 arm64 1.1.7-1 [22.5 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 libinput10 arm64 1.27.1-1 [122 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 libopus0 arm64 1.5.2-2 [2813 kB] Get: 284 http://deb.debian.org/debian trixie/main arm64 libsamplerate0 arm64 0.2.2-4+b2 [945 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 libjack-jackd2-0 arm64 1.9.22~dfsg-4 [265 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 libjbig-dev arm64 2.1-6.1+b2 [30.5 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.1-2 [3726 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 liblerc-dev arm64 4.0.0+ds-5 [164 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 libmd4c0 arm64 0.5.2-2+b1 [46.1 kB] Get: 291 http://deb.debian.org/debian trixie/main arm64 libmp3lame0 arm64 3.100-6+b3 [355 kB] Get: 292 http://deb.debian.org/debian trixie/main arm64 libmpg123-0t64 arm64 1.32.10-1 [142 kB] Get: 293 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5+20250216-1 [96.1 kB] Get: 294 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5+20250216-1 [341 kB] Get: 295 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.45-1 [247 kB] Get: 296 http://deb.debian.org/debian trixie/main arm64 libportaudio2 arm64 19.6.0-1.2+b3 [58.8 kB] Get: 297 http://deb.debian.org/debian trixie/main arm64 libproxy1v5 arm64 0.5.9-1 [25.4 kB] Get: 298 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 299 http://deb.debian.org/debian trixie/main arm64 libqrupdate1 arm64 1.1.5-1 [31.9 kB] Get: 300 http://deb.debian.org/debian trixie/main arm64 libqscintilla2-qt6-l10n all 2.14.1+dfsg-1 [105 kB] Get: 301 http://deb.debian.org/debian trixie/main arm64 shared-mime-info arm64 2.4-5+b2 [756 kB] Get: 302 http://deb.debian.org/debian trixie/main arm64 libqt6core6t64 arm64 6.7.2+dfsg-6 [1645 kB] Get: 303 http://deb.debian.org/debian trixie/main arm64 libqt6dbus6 arm64 6.7.2+dfsg-6 [243 kB] Get: 304 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 305 http://deb.debian.org/debian trixie/main arm64 libts0t64 arm64 1.22-1.1+b1 [61.6 kB] Get: 306 http://deb.debian.org/debian trixie/main arm64 libxcb-util1 arm64 0.4.1-1 [23.6 kB] Get: 307 http://deb.debian.org/debian trixie/main arm64 libxcb-image0 arm64 0.4.0-2+b2 [21.9 kB] Get: 308 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 309 http://deb.debian.org/debian trixie/main arm64 libxcb-render-util0 arm64 0.3.10-1 [18.5 kB] Get: 310 http://deb.debian.org/debian trixie/main arm64 libxcb-cursor0 arm64 0.1.5-1 [17.1 kB] Get: 311 http://deb.debian.org/debian trixie/main arm64 libxcb-icccm4 arm64 0.4.2-1 [27.2 kB] Get: 312 http://deb.debian.org/debian trixie/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [16.8 kB] Get: 313 http://deb.debian.org/debian trixie/main arm64 libxcb-shape0 arm64 1.17.0-2+b1 [106 kB] Get: 314 http://deb.debian.org/debian trixie/main arm64 libxcb-xinput0 arm64 1.17.0-2+b1 [130 kB] Get: 315 http://deb.debian.org/debian trixie/main arm64 libxcb-xkb1 arm64 1.17.0-2+b1 [129 kB] Get: 316 http://deb.debian.org/debian trixie/main arm64 xkb-data all 2.42-1 [790 kB] Get: 317 http://deb.debian.org/debian trixie/main arm64 libxkbcommon0 arm64 1.7.0-2 [106 kB] Get: 318 http://deb.debian.org/debian trixie/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2 [15.2 kB] Get: 319 http://deb.debian.org/debian trixie/main arm64 libqt6gui6 arm64 6.7.2+dfsg-6 [2745 kB] Get: 320 http://deb.debian.org/debian trixie/main arm64 libqt6widgets6 arm64 6.7.2+dfsg-6 [2441 kB] Get: 321 http://deb.debian.org/debian trixie/main arm64 libqt6printsupport6 arm64 6.7.2+dfsg-6 [205 kB] Get: 322 http://deb.debian.org/debian trixie/main arm64 libqscintilla2-qt6-15 arm64 2.14.1+dfsg-1+b4 [1066 kB] Get: 323 http://deb.debian.org/debian trixie/main arm64 libqt5core5t64 arm64 5.15.15+dfsg-4 [1735 kB] Get: 324 http://deb.debian.org/debian trixie/main arm64 libqt5concurrent5t64 arm64 5.15.15+dfsg-4 [45.0 kB] Get: 325 http://deb.debian.org/debian trixie/main arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-4 [206 kB] Get: 326 http://deb.debian.org/debian trixie/main arm64 libqt5network5t64 arm64 5.15.15+dfsg-4 [651 kB] Get: 327 http://deb.debian.org/debian trixie/main arm64 libxcb-xinerama0 arm64 1.17.0-2+b1 [105 kB] Get: 328 http://deb.debian.org/debian trixie/main arm64 libqt5gui5t64 arm64 5.15.15+dfsg-4 [3196 kB] Get: 329 http://deb.debian.org/debian trixie/main arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-4 [2284 kB] Get: 330 http://deb.debian.org/debian trixie/main arm64 libqt5opengl5t64 arm64 5.15.15+dfsg-4 [144 kB] Get: 331 http://deb.debian.org/debian trixie/main arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-4 [199 kB] Get: 332 http://deb.debian.org/debian trixie/main arm64 libqt5sql5t64 arm64 5.15.15+dfsg-4 [121 kB] Get: 333 http://deb.debian.org/debian trixie/main arm64 libqt5test5t64 arm64 5.15.15+dfsg-4 [139 kB] Get: 334 http://deb.debian.org/debian trixie/main arm64 libqt5xml5t64 arm64 5.15.15+dfsg-4 [122 kB] Get: 335 http://deb.debian.org/debian trixie/main arm64 libvulkan-dev arm64 1.4.304.0-1 [1452 kB] Get: 336 http://deb.debian.org/debian trixie/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB] Get: 337 http://deb.debian.org/debian trixie/main arm64 qt5-qmake-bin arm64 5.15.15+dfsg-4 [923 kB] Get: 338 http://deb.debian.org/debian trixie/main arm64 qtchooser arm64 66-2+b1 [24.5 kB] Get: 339 http://deb.debian.org/debian trixie/main arm64 qt5-qmake arm64 5.15.15+dfsg-4 [224 kB] Get: 340 http://deb.debian.org/debian trixie/main arm64 qtbase5-dev-tools arm64 5.15.15+dfsg-4 [720 kB] Get: 341 http://deb.debian.org/debian trixie/main arm64 qtbase5-dev arm64 5.15.15+dfsg-4 [1121 kB] Get: 342 http://deb.debian.org/debian trixie/main arm64 libqt5opengl5-dev arm64 5.15.15+dfsg-4 [51.7 kB] Get: 343 http://deb.debian.org/debian trixie/main arm64 libqt5svg5 arm64 5.15.15-2 [128 kB] Get: 344 http://deb.debian.org/debian trixie/main arm64 libqt5svg5-dev arm64 5.15.15-2 [13.0 kB] Get: 345 http://deb.debian.org/debian trixie/main arm64 libqt6core5compat6 arm64 6.7.2-3 [126 kB] Get: 346 http://deb.debian.org/debian trixie/main arm64 libqt6sql6 arm64 6.7.2+dfsg-6 [131 kB] Get: 347 http://deb.debian.org/debian trixie/main arm64 libqt6help6 arm64 6.7.2-6 [169 kB] Get: 348 http://deb.debian.org/debian trixie/main arm64 libqt6network6 arm64 6.7.2+dfsg-6 [717 kB] Get: 349 http://deb.debian.org/debian trixie/main arm64 libqt6opengl6 arm64 6.7.2+dfsg-6 [381 kB] Get: 350 http://deb.debian.org/debian trixie/main arm64 libqt6openglwidgets6 arm64 6.7.2+dfsg-6 [49.0 kB] Get: 351 http://deb.debian.org/debian trixie/main arm64 libqt6xml6 arm64 6.7.2+dfsg-6 [82.4 kB] Get: 352 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-6 [155 kB] Get: 353 http://deb.debian.org/debian trixie/main arm64 libsharpyuv-dev arm64 1.5.0-0.1 [118 kB] Get: 354 http://deb.debian.org/debian trixie/main arm64 libvorbis0a arm64 1.3.7-2+b1 [84.5 kB] Get: 355 http://deb.debian.org/debian trixie/main arm64 libvorbisenc2 arm64 1.3.7-2+b1 [76.3 kB] Get: 356 http://deb.debian.org/debian trixie/main arm64 libsndfile1 arm64 1.2.2-2+b1 [186 kB] Get: 357 http://deb.debian.org/debian trixie/main arm64 libspqr4 arm64 1:7.8.3+dfsg-3 [128 kB] Get: 358 http://deb.debian.org/debian trixie/main arm64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 359 http://deb.debian.org/debian trixie/main arm64 libwebpdecoder3 arm64 1.5.0-0.1 [182 kB] Get: 360 http://deb.debian.org/debian trixie/main arm64 libwebp-dev arm64 1.5.0-0.1 [406 kB] Get: 361 http://deb.debian.org/debian trixie/main arm64 libtiffxx6 arm64 4.5.1+git230720-5 [149 kB] Get: 362 http://deb.debian.org/debian trixie/main arm64 libtiff-dev arm64 4.5.1+git230720-5 [451 kB] Get: 363 http://deb.debian.org/debian trixie/main arm64 libumfpack6 arm64 1:7.8.3+dfsg-3 [228 kB] Get: 364 http://deb.debian.org/debian trixie/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 365 http://deb.debian.org/debian trixie/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 366 http://deb.debian.org/debian trixie/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 367 http://deb.debian.org/debian trixie/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b1 [300 kB] Get: 368 http://deb.debian.org/debian trixie/main arm64 matlab-support-dev all 0.1.1 [5228 B] Get: 369 http://deb.debian.org/debian trixie/main arm64 texinfo-lib arm64 7.1.1-1+b1 [220 kB] Get: 370 http://deb.debian.org/debian trixie/main arm64 tex-common all 6.18 [32.5 kB] Get: 371 http://deb.debian.org/debian trixie/main arm64 texinfo all 7.1.1-1 [1753 kB] Get: 372 http://deb.debian.org/debian trixie/main arm64 octave-common all 9.4.0-1 [6593 kB] Get: 373 http://deb.debian.org/debian trixie/main arm64 octave arm64 9.4.0-1 [8411 kB] Get: 374 http://deb.debian.org/debian trixie/main arm64 octave-dev arm64 9.4.0-1 [1002 kB] Fetched 189 MB in 1s (237 MB/s) Preconfiguring packages ... Selecting previously unselected package libfftw3-double3:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19916 files and directories currently installed.) Preparing to unpack .../00-libfftw3-double3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../01-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... 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Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up octave-common (9.4.0-1) ... Setting up libpcre2-16-0:arm64 (10.45-1) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libopengl0:arm64 (1.7.0-1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libxcb-util1:arm64 (0.4.1-1) ... Setting up libxcb-xkb1:arm64 (1.17.0-2+b1) ... Setting up libxcb-image0:arm64 (0.4.0-2+b2) ... Setting up libkrb5support0:arm64 (1.21.3-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Apr 3 08:28:14 UTC 2026. Universal Time is now: Fri Apr 3 08:28:14 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... Setting up libasound2-data (1.2.13-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:arm64 (4.13.3-1) ... Setting up libblas3:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb-xinerama0:arm64 (1.17.0-2+b1) ... Setting up libunbound8:arm64 (1.22.0-1+b1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ... Setting up libasound2t64:arm64 (1.2.13-1+b1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3.1) ... Setting up qt5-qmake-bin (5.15.15+dfsg-4) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3.1) ... Setting up libxcb-sync1:arm64 (1.17.0-2+b1) ... Setting up libxcb-cursor0:arm64 (0.1.5-1) ... Setting up libavahi-common-data:arm64 (0.8-16) ... Setting up libncurses6:arm64 (6.5+20250216-1) ... Setting up libdbus-1-3:arm64 (1.16.0-1) ... Setting up libopus0:arm64 (1.5.2-2) ... Setting up libproc2-0:arm64 (2:4.0.4-7) ... Setting up comerr-dev:arm64 (2.1-1.47.2-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:arm64 (3.4.1-1) ... Setting up libpng16-16t64:arm64 (1.6.47-1) ... Setting up libimath-3-1-29t64:arm64 (3.1.12-1+b3) ... Setting up libvorbis0a:arm64 (1.3.7-2+b1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libflac14:arm64 (1.5.0+ds-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:arm64 (1:3.6.0-10+b1) ... Setting up liblerc-dev:arm64 (4.0.0+ds-5) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libqscintilla2-qt6-l10n (2.14.1+dfsg-1) ... Setting up libltdl7:arm64 (2.5.4-3) ... Setting up libfftw3-double3:arm64 (3.3.10-2+b1) ... Setting up libglapi-mesa:arm64 (24.3.4-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-16) ... Setting up libraw23t64:arm64 (0.21.3-1+b1) ... Setting up libvulkan1:arm64 (1.4.304.0-1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libnghttp3-dev:arm64 (1.6.0-2) ... Setting up liblzma-dev:arm64 (5.6.3-1+b1) ... Setting up libgif7:arm64 (5.2.2-1+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdav1d7:arm64 (1.5.1-1) ... Setting up libmtdev1t64:arm64 (1.1.7-1) ... Setting up sensible-utils (0.0.24) ... Setting up libduktape207:arm64 (2.7.0-2+b2) ... Setting up libxshmfence1:arm64 (1.3-1+b3) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libxcb-randr0:arm64 (1.17.0-2+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libmd4c0:arm64 (0.5.2-2+b1) ... Setting up libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... Setting up libopenjp2-7:arm64 (2.5.3-1) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.9.1-1) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libglu1-mesa:arm64 (9.0.2-1.1+b3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libopengl-dev:arm64 (1.7.0-1+b2) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libgsl28:arm64 (2.8+dfsg-5) ... Setting up libde265-0:arm64 (1.0.15-1+b2) ... Setting up libsharpyuv-dev:arm64 (1.5.0-0.1) ... Setting up libsamplerate0:arm64 (0.2.2-4+b2) ... Setting up libtasn1-6-dev:arm64 (4.20.0-2) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up libtiffxx6:arm64 (4.5.1+git230720-5) ... Setting up libdeflate-dev:arm64 (1.23-1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libevdev2:arm64 (1.13.3+dfsg-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b7) ... Setting up qtchooser (66-2+b1) ... Setting up libmp3lame0:arm64 (3.100-6+b3) ... Setting up libblas-dev:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up libvorbisenc2:arm64 (1.3.7-2+b1) ... Setting up libwacom-common (2.14.0-1) ... Setting up libxkbcommon0:arm64 (1.7.0-2) ... Setting up matlab-support-dev (0.1.1) ... Setting up libwayland-client0:arm64 (1.23.1-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-16) ... Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libxcb-dri3-0:arm64 (1.17.0-2+b1) ... Setting up libllvm19:arm64 (1:19.1.7-1+b1) ... Setting up libwayland-server0:arm64 (1.23.1-3) ... Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up liblapack3:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5+20250216-1) ... Setting up gettext (0.23.1-1) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libarpack2t64:arm64 (3.9.1-4) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Setting up libamd3:arm64 (1:7.8.3+dfsg-3) ... Setting up libxau-dev:arm64 (1:1.0.11-1) ... Setting up qt5-qmake:arm64 (5.15.15+dfsg-4) ... Setting up nettle-dev:arm64 (3.10.1-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-3) ... Setting up libcolamd3:arm64 (1:7.8.3+dfsg-3) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libaec-dev:arm64 (1.1.3-1+b1) ... Setting up libavahi-common3:arm64 (0.8-16) ... Setting up libcxsparse4:arm64 (1:7.8.3+dfsg-3) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3.1) ... Setting up libjbig-dev:arm64 (2.1-6.1+b2) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up libqrupdate1:arm64 (1.1.5-1) ... Setting up libcamd3:arm64 (1:7.8.3+dfsg-3) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:arm64 (1:1.1.5-1) ... Setting up libglib2.0-0t64:arm64 (2.83.4-1) ... No schema files found: doing nothing. Setting up libwebp-dev:arm64 (1.5.0-0.1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libtiff-dev:arm64 (4.5.1+git230720-5) ... Setting up libglpk40:arm64 (5.0-1+b2) ... Setting up libxfixes3:arm64 (1:6.0.0-2+b4) ... Setting up libldap-dev:arm64 (2.6.9+dfsg-1) ... Setting up libopenexr-3-1-30:arm64 (3.1.5-5.1+b4) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libxinerama1:arm64 (2:1.1.4-3+b3) ... Setting up libxkbcommon-x11-0:arm64 (1.7.0-2) ... Setting up liblapack-dev:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up ucf (3.0050) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libccolamd3:arm64 (1:7.8.3+dfsg-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libjack-jackd2-0:arm64 (1.9.22~dfsg-4) ... Setting up libdrm2:arm64 (2.4.123-1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Setting up groff-base (1.23.0-7) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-16) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libsndfile1:arm64 (1.2.2-2+b1) ... Setting up gfortran-14 (14.2.0-16) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libpython3.13-stdlib:arm64 (3.13.2-1) ... Setting up libfftw3-dev:arm64 (3.3.10-2+b1) ... Setting up libavahi-client3:arm64 (0.8-16) ... Setting up libgudev-1.0-0:arm64 (238-6) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libpython3-stdlib:arm64 (3.13.2-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... Setting up libjxl0.10:arm64 (0.10.4-2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libgnutls-openssl27t64:arm64 (3.8.9-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up libportaudio2:arm64 (19.6.0-1.2+b3) ... Setting up libqt6core6t64:arm64 (6.7.2+dfsg-6) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libcholmod5:arm64 (1:7.8.3+dfsg-3) ... Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ... Setting up libspqr4:arm64 (1:7.8.3+dfsg-3) ... Setting up python3.13 (3.13.2-1) ... Setting up libwacom9:arm64 (2.14.0-1) ... Setting up libdrm-radeon1:arm64 (2.4.123-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxcursor1:arm64 (1:1.2.3-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libx11-dev:arm64 (2:1.8.10-2) ... Setting up bc (1.07.1-4+b1) ... Setting up python3 (3.13.2-1) ... Setting up libreadline-dev:arm64 (8.2-6) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libinput-bin (1.27.1-1) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libqt5core5t64:arm64 (5.15.15+dfsg-4) ... Setting up libgnutls-dane0t64:arm64 (3.8.9-2) ... Setting up libqt6xml6:arm64 (6.7.2+dfsg-6) ... Setting up libqt6sql6:arm64 (6.7.2+dfsg-6) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:arm64 (1.21.3-4) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libxext-dev:arm64 (2:1.3.4-1+b3) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libumfpack6:arm64 (1:7.8.3+dfsg-3) ... Setting up libqt5sql5t64:arm64 (5.15.15+dfsg-4) ... Setting up libqt6core5compat6:arm64 (6.7.2-3) ... Setting up libfltk1.3t64:arm64 (1.3.8-6.1+b1) ... Setting up libcups2t64:arm64 (2.4.10-2+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libqt6dbus6:arm64 (6.7.2+dfsg-6) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-4) ... Setting up libgnutls28-dev:arm64 (3.8.9-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up libinput10:arm64 (1.27.1-1) ... Setting up mesa-libgallium:arm64 (24.3.4-3) ... Setting up libvulkan-dev:arm64 (1.4.304.0-1) ... Setting up libqt5dbus5t64:arm64 (5.15.15+dfsg-4) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:arm64 (8.12.1-2) ... Setting up libkdb5-10t64:arm64 (1.21.3-4) ... Setting up libgbm1:arm64 (24.3.4-3) ... Setting up libqt5concurrent5t64:arm64 (5.15.15+dfsg-4) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libgl1-mesa-dri:arm64 (24.3.4-3) ... Setting up libqt5network5t64:arm64 (5.15.15+dfsg-4) ... Setting up libcurl3t64-gnutls:arm64 (8.12.1-2) ... Setting up libqt5xml5t64:arm64 (5.15.15+dfsg-4) ... Setting up debhelper (13.24.1) ... Setting up libqt5test5t64:arm64 (5.15.15+dfsg-4) ... Setting up qtbase5-dev-tools (5.15.15+dfsg-4) ... Setting up python3-inflect (7.3.1-2) ... Setting up libegl-mesa0:arm64 (24.3.4-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up texinfo (7.1.1-1) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-4) ... Setting up libegl1:arm64 (1.7.0-1+b2) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Setting up krb5-multidev:arm64 (1.21.3-4) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Setting up libproxy1v5:arm64 (0.5.9-1) ... Setting up libglx-mesa0:arm64 (24.3.4-3) ... Setting up python3-setuptools (75.8.0-1) ... Setting up libglx0:arm64 (1.7.0-1+b2) ... Setting up libkrb5-dev:arm64 (1.21.3-4) ... Setting up libgl1:arm64 (1.7.0-1+b2) ... Setting up libqt6gui6:arm64 (6.7.2+dfsg-6) ... Setting up libcurl4-openssl-dev:arm64 (8.12.1-2) ... Setting up libqt6network6:arm64 (6.7.2+dfsg-6) ... Setting up libglx-dev:arm64 (1.7.0-1+b2) ... Setting up libgl-dev:arm64 (1.7.0-1+b2) ... Setting up dh-python (6.20250108) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Setting up libegl-dev:arm64 (1.7.0-1+b2) ... Setting up libqt6opengl6:arm64 (6.7.2+dfsg-6) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2+b1) ... Setting up libqt6widgets6:arm64 (6.7.2+dfsg-6) ... Setting up libfltk-gl1.3t64:arm64 (1.3.8-6.1+b1) ... Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-4) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1+b3) ... Setting up libqt6openglwidgets6:arm64 (6.7.2+dfsg-6) ... Setting up libqt6printsupport6:arm64 (6.7.2+dfsg-6) ... Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-4) ... Setting up libqt6help6:arm64 (6.7.2-6) ... Setting up libqscintilla2-qt6-15:arm64 (2.14.1+dfsg-1+b4) ... Setting up libqt5svg5:arm64 (5.15.15-2) ... Setting up libqt5svg5-dev:arm64 (5.15.15-2) ... Setting up libqt5opengl5t64:arm64 (5.15.15+dfsg-4) ... Setting up libqt5printsupport5t64:arm64 (5.15.15+dfsg-4) ... Setting up qtbase5-dev:arm64 (5.15.15+dfsg-4) ... Setting up libqt5opengl5-dev:arm64 (5.15.15+dfsg-4) ... Setting up libheif-plugin-dav1d:arm64 (1.19.5-1+b1) ... Setting up libheif-plugin-libde265:arm64 (1.19.5-1+b1) ... Setting up libheif1:arm64 (1.19.5-1+b1) ... Setting up libmagickcore-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Setting up libmagickwand-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Setting up libgraphicsmagick-q16-3t64 (1.4+really1.3.45-1+b2) ... Setting up libgraphicsmagick++-q16-12t64 (1.4+really1.3.45-1+b2) ... Setting up octave (9.4.0-1) ... Setting up octave-dev (9.4.0-1) ... Setting up imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist Setting up imagemagick (8:7.1.1.43+dfsg1-1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mrtrix3-3.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mrtrix3_3.0.4-1_source.changes dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' [ -f config ] && python3 ./build clean || true find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \ icons/mrview.qrc icons/shview.qrc rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'build.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory rm: cannot remove 'icons/mrview.qrc': No such file or directory rm: cannot remove 'icons/shview.qrc': No such file or directory make[1]: [debian/rules:76: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 14.2.0-16) 14.2.0 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.5.1 Checking for PNG library: not found - PNG support disabled Checking for FFTW library: fftw-3.3.10 Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.15.15) Checking for Qt qmake: qmake (version 5.15.15) Checking for Qt rcc: rcc (version 5.15.15) Checking for Qt: 5.15.15 writing configuration to file './config': ok make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' ./build -verbose active config is default reading configuration from "config"... is_likely_text: bin/5ttgen: starts with shebang is_likely_text: bin/blend: starts with shebang is_likely_text: bin/convert_bruker: starts with shebang is_likely_text: bin/dwi2response: starts with shebang is_likely_text: bin/dwibiascorrect: starts with shebang is_likely_text: bin/dwicat: starts with shebang is_likely_text: bin/dwifslpreproc: starts with shebang is_likely_text: bin/dwigradcheck: starts with shebang is_likely_text: bin/dwinormalise: starts with shebang is_likely_text: bin/dwishellmath: starts with shebang is_likely_text: bin/for_each: starts with shebang is_likely_text: bin/gen_scheme: starts with shebang is_likely_text: bin/labelsgmfix: starts with shebang is_likely_text: bin/mrtrix3.py: utf-8 encoded is_likely_text: bin/mrtrix_cleanup: starts with shebang is_likely_text: bin/notfound: starts with shebang is_likely_text: bin/population_template: starts with shebang is_likely_text: bin/responsemean: starts with shebang getting MRtrix version from folder "."... fetching version information from "MRTRIX_BASE_VERSION" in "./core/version.h": 3.0.4 Using MRtrix version "3.0.4" version file "./core/version.cpp" is out of date - updating version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/warpinvert bin/warpinit bin/warpcorrect bin/warpconvert bin/warp2metric bin/voxel2mesh bin/voxel2fixel bin/vectorstats bin/tsfvalidate bin/tsfthreshold bin/tsfsmooth bin/tsfmult bin/tsfinfo bin/tsfdivide bin/transformconvert bin/transformcompose bin/transformcalc bin/tensor2metric bin/tcktransform bin/tckstats bin/tcksift2 bin/tcksift bin/tcksample bin/tckresample bin/tckmap bin/tckinfo bin/tckglobal bin/tckgen bin/tckedit bin/tckdfc bin/tckconvert bin/tck2fixel bin/tck2connectome bin/shview bin/shconv bin/shbasis bin/sh2response bin/sh2power bin/sh2peaks bin/sh2amp bin/peaks2fixel bin/peaks2amp bin/mtnormalise bin/mrview bin/mrtransform bin/mrthreshold bin/mrstats bin/mrregister bin/mrmetric bin/mrmath bin/mrinfo bin/mrhistogram bin/mrhistmatch bin/mrgrid bin/mrfilter bin/mredit bin/mrdump bin/mrdegibbs bin/mrconvert bin/mrcolour bin/mrclusterstats bin/mrcheckerboardmask bin/mrcentroid bin/mrcat bin/mrcalc bin/mraverageheader bin/meshfilter bin/meshconvert bin/mesh2voxel bin/maskfilter bin/maskdump bin/labelstats bin/labelconvert bin/label2mesh bin/label2colour bin/fod2fixel bin/fod2dec bin/fixelreorient bin/fixelfilter bin/fixelcrop bin/fixelcorrespondence bin/fixelconvert bin/fixelconnectivity bin/fixelcfestats bin/fixel2voxel bin/fixel2tsf bin/fixel2sh bin/fixel2peaks bin/dwiextract bin/dwidenoise bin/dwi2tensor bin/dwi2mask bin/dwi2fod bin/dwi2adc bin/dirstat bin/dirsplit bin/dirorder bin/dirmerge bin/dirgen bin/dirflip bin/dcminfo bin/dcmedit bin/connectomestats bin/connectomeedit bin/connectome2tck bin/amp2sh bin/amp2response bin/afdconnectivity bin/5ttedit bin/5ttcheck bin/5tt2vis bin/5tt2gmwmi TODO list contains 546 items Build will use 12 threads ( 1/546) [CC] tmp/src/exec_version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o ( 2/546) [CC] tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o ( 3/546) [CC] tmp/core/file/mmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o ( 4/546) [CC] tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o ( 5/546) [CC] tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o ( 6/546) [CC] tmp/core/image_io/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o ( 7/546) [CC] tmp/core/math/betainc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/betainc.cpp -o tmp/core/math/betainc.o ( 8/546) [CC] tmp/core/formats/png.o ( 9/546) [CC] tmp/core/image_io/base.o ( 10/546) [CC] tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/base.cpp -o tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/png.cpp -o tmp/core/formats/png.o ( 11/546) [CC] tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o ( 12/546) [CC] tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/version.cpp -o tmp/core/version.o ( 13/546) [CC] tmp/core/formats/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/tiff.cpp -o tmp/core/formats/tiff.o ( 14/546) [CC] tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/app.cpp -o tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/version.cpp -o tmp/core/version.o: core/version.cpp:5:30: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 5 | const char* build_date = __DATE__; | ^~~~~~~~ ( 15/546) [CC] tmp/core/formats/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/list.cpp -o tmp/core/formats/list.o ( 16/546) [CC] tmp/core/file/dicom/study.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o ( 17/546) [CC] tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o ( 18/546) [CC] tmp/core/image_io/scratch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o ( 19/546) [CC] tmp/core/file/name_parser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o ( 20/546) [CC] tmp/core/image_io/gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/gz.cpp -o tmp/core/image_io/gz.o ( 21/546) [CC] tmp/core/file/config.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o ( 22/546) [CC] tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o ( 23/546) [CC] tmp/core/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o ( 24/546) [CC] tmp/core/math/stats/glm.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o ( 25/546) [CC] tmp/core/header.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/header.cpp -o tmp/core/header.o ( 26/546) [CC] tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o ( 27/546) [CC] tmp/core/image_io/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o ( 28/546) [CC] tmp/core/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/tiff.cpp -o tmp/core/file/tiff.o ( 31/546) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o ( 32/546) [CC] tmp/core/axes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/axes.cpp -o tmp/core/axes.o ( 33/546) [CC] tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o ( 34/546) [CC] tmp/core/image_io/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/png.cpp -o tmp/core/image_io/png.o ( 35/546) [CC] tmp/core/formats/mrtrix_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o ( 36/546) [CC] tmp/core/algo/histogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/algo/histogram.cpp -o tmp/core/algo/histogram.o ( 37/546) [CC] tmp/core/stride.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/stride.cpp -o tmp/core/stride.o ( 38/546) [CC] tmp/core/filter/connected_components.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/filter/connected_components.cpp -o tmp/core/filter/connected_components.o ( 39/546) [CC] tmp/core/file/dicom/quick_scan.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/quick_scan.cpp -o tmp/core/file/dicom/quick_scan.o ( 40/546) [CC] tmp/core/formats/par.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/par.cpp -o tmp/core/formats/par.o ( 41/546) [CC] tmp/core/image_io/variable_scaling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/variable_scaling.cpp -o tmp/core/image_io/variable_scaling.o ( 42/546) [CC] tmp/core/formats/nifti1_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o ( 43/546) [CC] tmp/core/math/stats/shuffle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/stats/shuffle.cpp -o tmp/core/math/stats/shuffle.o ( 44/546) [CC] tmp/core/formats/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/pipe.cpp -o tmp/core/formats/pipe.o ( 45/546) [CC] tmp/core/formats/mrtrix_sparse_legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o ( 46/546) [CC] tmp/core/math/erfinv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/erfinv.cpp -o tmp/core/math/erfinv.o ( 47/546) [CC] tmp/core/math/zstatistic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/zstatistic.cpp -o tmp/core/math/zstatistic.o ( 48/546) [CC] tmp/core/file/nifti_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/nifti_utils.cpp -o tmp/core/file/nifti_utils.o ( 49/546) [CC] tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/mgh.cpp -o tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/14/bits/exception_ptr.h:41, from /usr/include/c++/14/exception:166, from /usr/include/c++/14/ios:41, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from core/file/json_utils.cpp:17: In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12715:36: /usr/include/c++/14/bits/move.h:235:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 235 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12715:38: note: '' declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12768:32: /usr/include/c++/14/bits/move.h:235:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 235 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12768:34: note: '' declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12792:36: /usr/include/c++/14/bits/move.h:235:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 235 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12792:38: note: '' declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12822:32: /usr/include/c++/14/bits/move.h:235:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 235 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12822:34: note: '' declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12897:24: /usr/include/c++/14/bits/move.h:235:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 235 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12897:26: note: '' declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 50/546) [CC] tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o ( 51/546) [CC] tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o ( 52/546) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o ( 53/546) [CC] tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o ( 54/546) [CC] tmp/core/formats/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o ( 55/546) [CC] tmp/core/formats/mrtrix_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o ( 56/546) [CC] tmp/core/adapter/reslice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o ( 57/546) [CC] tmp/core/math/stats/import.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o ( 86/546) [CC] tmp/cmd/warp2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 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-mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o ( 89/546) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o ( 90/546) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o ( 91/546) [CC] tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 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tmp/src/connectome/lut.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o ( 94/546) [CC] tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o ( 95/546) [CC] tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o ( 96/546) [CC] tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o ( 97/546) [CC] tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o ( 98/546) [CC] tmp/src/dwi/tractography/properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o ( 99/546) [CC] tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'BoundsCheck::BoundsCheck(const BoundsCheck&)' at cmd/warpcorrect.cpp:53:7, inlined from 'MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]' at ./core/algo/threaded_loop.h:276:11, inlined from 'void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]' at ./core/algo/threaded_loop.h:376:19, inlined from 'void run()' at cmd/warpcorrect.cpp:113:10: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function 'void run()': cmd/warpcorrect.cpp:110:8: note: 'func' declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ (100/546) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o (101/546) [CC] tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o (102/546) [CC] tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o (103/546) [CC] tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o (104/546) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o (105/546) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o (106/546) [CC] tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter 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g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o (128/546) [CC] tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o (133/546) [CC] tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (134/546) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o (135/546) [CC] tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o (136/546) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o (137/546) [CC] tmp/src/dwi/tractography/mapping/voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o (138/546) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (139/546) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o (140/546) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o (141/546) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o (142/546) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o (143/546) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o (144/546) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o (145/546) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o (146/546) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (147/546) [CC] tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o (148/546) [CC] tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o (149/546) [CC] tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (150/546) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o (151/546) [LD] lib/libmrtrix.so g++ tmp/core/file/mmap.o tmp/core/mrtrix.o tmp/core/formats/mgz.o tmp/core/image_io/tiff.o tmp/core/math/betainc.o tmp/core/formats/png.o tmp/core/image_io/base.o tmp/core/file/ofstream.o tmp/core/image_io/fetch_store.o tmp/core/version.o tmp/core/formats/tiff.o tmp/core/app.o tmp/core/formats/list.o tmp/core/file/dicom/study.o tmp/core/image_io/default.o tmp/core/image_io/scratch.o tmp/core/file/name_parser.o tmp/core/image_io/gz.o tmp/core/file/config.o tmp/core/formats/xds.o tmp/core/phase_encoding.o tmp/core/math/stats/glm.o tmp/core/header.o tmp/core/formats/nifti1.o tmp/core/image_io/ram.o tmp/core/dwi/gradient.o tmp/core/formats/mgh.o tmp/core/file/tiff.o tmp/core/file/json_utils.o tmp/core/axes.o tmp/core/file/dicom/series.o tmp/core/image_io/png.o tmp/core/formats/mrtrix_utils.o tmp/core/algo/histogram.o tmp/core/stride.o tmp/core/filter/connected_components.o tmp/core/file/dicom/quick_scan.o tmp/core/formats/par.o tmp/core/image_io/variable_scaling.o tmp/core/formats/nifti1_gz.o tmp/core/math/stats/shuffle.o tmp/core/formats/pipe.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/math/erfinv.o tmp/core/math/zstatistic.o tmp/core/file/nifti_utils.o tmp/core/file/mgh.o tmp/core/file/dicom/dict.o tmp/core/file/dicom/select_cmdline.o tmp/core/math/average_space.o tmp/core/stats.o tmp/core/formats/dicom.o tmp/core/formats/mrtrix_gz.o tmp/core/adapter/reslice.o tmp/core/math/stats/import.o tmp/core/file/dicom/element.o tmp/core/formats/mrtrix.o tmp/core/signal_handler.o tmp/core/file/dicom/patient.o tmp/core/file/dicom/mapper.o tmp/core/file/key_value.o tmp/core/exception.o tmp/core/image_io/mosaic.o tmp/core/image_io/pipe.o tmp/core/formats/ram.o tmp/core/math/stats/fwe.o tmp/core/misc/bitset.o tmp/core/formats/nifti2_gz.o tmp/core/dwi/shells.o tmp/core/image_io/sparse.o tmp/core/math/bessel.o tmp/core/file/png.o tmp/core/thread.o tmp/core/datatype.o tmp/core/file/dicom/image.o tmp/core/file/dicom/tree.o tmp/core/math/SH.o tmp/core/progressbar.o tmp/core/formats/mri.o tmp/core/formats/nifti2.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -o lib/libmrtrix.so (152/546) [CC] tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o (153/546) [LB] bin/warpinvert g++ tmp/src/exec_version.o tmp/cmd/warpinvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert (154/546) [LB] bin/warpinit g++ tmp/src/exec_version.o tmp/cmd/warpinit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit (155/546) [LB] bin/warpcorrect g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect (156/546) [LB] bin/warpconvert g++ tmp/src/exec_version.o tmp/cmd/warpconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert (157/546) [LB] bin/warp2metric g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric (158/546) [LB] bin/voxel2mesh g++ tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/cmd/voxel2mesh.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/src/connectome/lut.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh (159/546) [LB] bin/voxel2fixel g++ tmp/cmd/voxel2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel (160/546) [LB] bin/vectorstats g++ tmp/src/exec_version.o tmp/cmd/vectorstats.o tmp/src/stats/permtest.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats (161/546) [LB] bin/tsfvalidate g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/cmd/tsfvalidate.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate (162/546) [LB] bin/tsfthreshold g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfthreshold.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold (163/546) [LB] bin/tsfsmooth g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfsmooth.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth (164/546) [LB] bin/tsfmult g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfmult.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult (165/546) [LB] bin/tsfinfo g++ tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo (166/546) [LB] bin/tsfdivide g++ tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfdivide.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide (167/546) [LB] bin/transformconvert g++ tmp/cmd/transformconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert (168/546) [LB] bin/transformcompose g++ tmp/cmd/transformcompose.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose (169/546) [LB] bin/tensor2metric g++ tmp/src/exec_version.o tmp/cmd/tensor2metric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric (170/546) [LB] bin/tcktransform g++ tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tcktransform.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform (171/546) [LB] bin/tckstats g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tckstats.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats (172/546) [CC] tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o (173/546) [CC] tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o (174/546) [CC] tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o (175/546) [CC] tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o (176/546) [LB] bin/tckresample g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample (177/546) [CC] tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)' at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]' at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]' at /usr/include/c++/14/bits/alloc_traits.h:575:17, inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:634:26, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:123:21, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:1301:21, inlined from 'void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/tractography/SIFT/model.h:228:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function 'void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]': src/dwi/tractography/SIFT/model.h:228:31: note: '' declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (178/546) [CC] tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o: In file included from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: ./core/math/SH.h: In function 'void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = MR::DWI::FMLS::SH_coefs]': ./core/math/SH.h:604:33: warning: '*AL[0]' may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (179/546) [CC] tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o (180/546) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o: In member function 'MR::DWI::Tractography::GT::ParticleEnd MR::DWI::Tractography::GT::InternalEnergyComputer::pickNeighbour()', inlined from 'MR::DWI::Tractography::GT::ParticleEnd MR::DWI::Tractography::GT::InternalEnergyComputer::pickNeighbour()' at src/dwi/tractography/GT/internalenergy.cpp:92:21: src/dwi/tractography/GT/internalenergy.cpp:104:18: warning: 'pe' may be used uninitialized [-Wmaybe-uninitialized] 104 | return pe; | ^~ src/dwi/tractography/GT/internalenergy.cpp: In member function 'MR::DWI::Tractography::GT::ParticleEnd MR::DWI::Tractography::GT::InternalEnergyComputer::pickNeighbour()': src/dwi/tractography/GT/internalenergy.cpp:96:23: note: 'pe' declared here 96 | ParticleEnd pe; | ^~ (181/546) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o (182/546) [LB] bin/tckinfo g++ tmp/cmd/tckinfo.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo (183/546) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)' at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]' at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]' at /usr/include/c++/14/bits/alloc_traits.h:575:17, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:117:30, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:1301:21, inlined from 'MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/fixel_map.h:47:28, inlined from 'MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from 'MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from 'MR::DWI::Tractography::SIFT::Model::Model(Set&, const MR::DWI::Directions::FastLookupSet&) [with Set = MR::Image; Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/tractography/SIFT/model.h:68:42, inlined from 'MR::DWI::Tractography::SIFT2::TckFactor::TckFactor(MR::Image&, const MR::DWI::Directions::FastLookupSet&)' at src/dwi/tractography/SIFT2/tckfactor.h:74:35, inlined from 'void run()' at cmd/tcksift2.cpp:165:36: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In function 'void run()': src/dwi/fixel_map.h:47:29: note: '' declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (184/546) [LB] bin/tcksift2 g++ tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/properties.o tmp/cmd/tcksift2.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/exec_version.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 (185/546) [CC] tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o (186/546) [CC] tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o (187/546) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (188/546) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD1.cpp -o tmp/src/dwi/tractography/algorithms/iFOD1.o (189/546) [CC] tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o (190/546) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o (191/546) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o (192/546) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o (193/546) [LB] bin/tcksample g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tcksample.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample (194/546) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)' at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]' at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]' at /usr/include/c++/14/bits/alloc_traits.h:575:17, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:117:30, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:1301:21, inlined from 'MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/fixel_map.h:47:28, inlined from 'MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from 'MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from 'MR::DWI::Tractography::SIFT::Model::Model(Set&, const MR::DWI::Directions::FastLookupSet&) [with Set = MR::Image; Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/tractography/SIFT/model.h:68:42, inlined from 'MR::DWI::Tractography::SIFT::SIFTer::SIFTer(MR::Image&, const MR::DWI::Directions::FastLookupSet&)' at src/dwi/tractography/SIFT/sifter.h:64:39, inlined from 'void run()' at cmd/tcksift.cpp:91:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In function 'void run()': src/dwi/fixel_map.h:47:29: note: '' declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (195/546) [LB] bin/tcksift g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tcksift.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift (196/546) [CC] tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o (197/546) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o (198/546) [CC] tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o (199/546) [LB] bin/transformcalc g++ tmp/src/exec_version.o tmp/cmd/transformcalc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc (200/546) [CC] tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o (201/546) [CC] tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o (202/546) [CC] tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o (203/546) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o (204/546) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o (205/546) [CC] tmp/cmd/tck2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o (206/546) [LB] bin/tckglobal g++ tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckglobal.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/GT/gt.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/exec_version.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal (207/546) [CC] tmp/cmd/tck2connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o (208/546) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o (209/546) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o (210/546) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (211/546) [CC] tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/gui.cpp -o tmp/src/gui/gui.o (212/546) [MOC] tmp/src/gui/lighting_dock_moc.cpp moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp (213/546) [CC] tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o (214/546) [LB] bin/tckedit g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tckedit.o tmp/src/exec_version.o tmp/src/dwi/tractography/editing/receiver.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit (215/546) [CC] tmp/src/gui/opengl/gl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (216/546) [CC] tmp/src/gui/opengl/font.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o (217/546) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp (218/546) [CC] tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o (219/546) [CC] tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o (220/546) [CC] tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ cmd/shview.cpp -o tmp/cmd/shview.o (221/546) [CC] tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o (222/546) [CC] tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o (223/546) [MOC] tmp/src/gui/shview/render_window_moc.cpp moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp (224/546) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o (225/546) [RCC] tmp/src/gui/shview/icons.cpp rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp (226/546) [CC] tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o (227/546) [CC] tmp/src/gui/lighting_dock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o (228/546) [CC] tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o (229/546) [LB] bin/tck2connectome g++ tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/connectome/matrix.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/file_base.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome (230/546) [MOC] tmp/src/gui/color_button_moc.cpp moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp (231/546) [CC] tmp/src/gui/color_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o (232/546) [MOC] tmp/src/gui/opengl/lighting_moc.cpp moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp (233/546) [CC] tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o (234/546) [CC] tmp/src/gui/color_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/color_button.cpp -o tmp/src/gui/color_button.o (235/546) [CC] tmp/src/gui/crosshair.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/crosshair.cpp -o tmp/src/gui/crosshair.o (236/546) [CC] tmp/src/gui/dialog/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o (237/546) [CC] tmp/src/gui/dwi/render_frame.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o (238/546) [CC] tmp/src/gui/opengl/gl_core_3_3.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o (239/546) [CC] tmp/src/gui/shview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/file_open.cpp -o tmp/src/gui/shview/file_open.o (240/546) [CC] tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o (241/546) [LB] bin/tckdfc g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/tckdfc.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc (242/546) [CC] tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o (243/546) [CC] tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: In file included from /usr/include/eigen3/Eigen/src/Core/util/ConfigureVectorization.h:392, from /usr/include/eigen3/Eigen/Core:22, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: In function 'float32x2_t vld1_f32(const float32_t*)', inlined from 'Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = __Float32x2_t]' at /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1710:45, inlined from 'Packet Eigen::internal::ploadt(const typename unpacket_traits::type*) [with Packet = __Float32x2_t; int Alignment = 0]' at /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:969:26, inlined from 'PacketType Eigen::internal::evaluator >::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; Derived = Eigen::Matrix]' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:238:42, inlined from 'PacketType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; UnaryOp = Eigen::internal::scalar_abs2_op; ArgType = const Eigen::Matrix]' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:596:81, inlined from 'PacketType Eigen::internal::redux_evaluator<_XprType>::packetByOuterInner(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; _XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >]' at /usr/include/eigen3/Eigen/src/Core/Redux.h:386:54, inlined from 'static PacketType Eigen::internal::redux_vec_unroller::run(const Evaluator&, const Func&) [with PacketType = __Float32x2_t; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0]' at /usr/include/eigen3/Eigen/src/Core/Redux.h:177:66, inlined from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >]' at /usr/include/eigen3/Eigen/src/Core/Redux.h:344:115, inlined from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix]' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'void Eigen::MatrixBase::normalize() [with Derived = Eigen::Matrix]' at /usr/include/eigen3/Eigen/src/Core/Dot.h:147:29, inlined from 'void PLYWriter::computeNormals(const MR::DWI::Tractography::Streamline&, MR::DWI::Tractography::Streamline&)' at cmd/tckconvert.cpp:411:23, inlined from 'virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)' at cmd/tckconvert.cpp:485:27: /usr/lib/gcc/aarch64-linux-gnu/14/include/arm_neon.h:12213:36: warning: '*(__Float32x2_t*)((char*)&normal + offsetof(Eigen::Vector3f, Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[0]))' may be used uninitialized [-Wmaybe-uninitialized] 12213 | return __builtin_aarch64_ld1v2sf ((const __builtin_aarch64_simd_sf *) __a); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/tckconvert.cpp: In member function 'virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)': cmd/tckconvert.cpp:396:50: note: 'normal' declared here 396 | Eigen::Vector3f sPrev, sNext, pt1, pt2, n, normal; | ^~~~~~ (244/546) [LB] bin/tckconvert g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tckconvert.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert (245/546) [CC] tmp/src/gui/opengl/shader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o (246/546) [CC] tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/projection.cpp -o tmp/src/gui/projection.o (247/546) [LB] bin/tck2fixel g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel (248/546) [CC] tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o (249/546) [CC] tmp/src/gui/shapes/halfsphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o (250/546) [CC] tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o (251/546) [CC] tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o (252/546) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o (253/546) [CC] tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o (254/546) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o (255/546) [CC] tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o (256/546) [CC] tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o (257/546) [CC] tmp/cmd/peaks2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/peaks2fixel.cpp -o tmp/cmd/peaks2fixel.o (258/546) [CC] tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o (259/546) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o (260/546) [LB] bin/shview g++ tmp/src/gui/gui.o tmp/src/dwi/directions/set.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/opengl/gl.o tmp/src/gui/opengl/font.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/dialog/list.o tmp/cmd/shview.o tmp/src/gui/dwi/renderer.o tmp/src/gui/opengl/lighting.o tmp/src/gui/shview/render_window_moc.o tmp/src/gui/shview/icons.o tmp/src/gui/lighting_dock.o tmp/src/gui/shview/render_window.o tmp/src/gui/color_button_moc.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/color_button.o tmp/src/gui/crosshair.o tmp/src/gui/dialog/file.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/shview/file_open.o tmp/src/gui/dialog/dialog.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/progress.o tmp/src/gui/opengl/shader.o tmp/src/gui/projection.o tmp/src/gui/dialog/dicom.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/src/gui/shapes/halfsphere.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/aarch64-linux-gnu/libQt5OpenGL.so /usr/lib/aarch64-linux-gnu/libQt5Svg.so /usr/lib/aarch64-linux-gnu/libQt5Widgets.so /usr/lib/aarch64-linux-gnu/libQt5Gui.so /usr/lib/aarch64-linux-gnu/libQt5Network.so /usr/lib/aarch64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/shview (261/546) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (262/546) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o (263/546) [LB] bin/shconv g++ tmp/src/exec_version.o tmp/cmd/shconv.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv (264/546) [CC] tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/cursor.cpp -o tmp/src/gui/cursor.o (265/546) [LB] bin/sh2power g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power (266/546) [CC] tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o (267/546) [LB] bin/tckmap g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap (268/546) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o (269/546) [LB] bin/peaks2amp g++ tmp/src/exec_version.o tmp/cmd/peaks2amp.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp (270/546) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o (271/546) [CC] tmp/src/gui/mrview/tool/transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/transform.cpp -o tmp/src/gui/mrview/tool/transform.o (272/546) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp (273/546) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o (274/546) [LB] bin/sh2response g++ tmp/cmd/sh2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response (275/546) [CC] tmp/src/gui/mrview/sync/processlock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/processlock.cpp -o tmp/src/gui/mrview/sync/processlock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function 'void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]': ./core/math/SH.h:604:33: warning: '*AL[0]' may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (276/546) [LB] bin/sh2peaks g++ tmp/src/exec_version.o tmp/cmd/sh2peaks.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks (277/546) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o (278/546) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o (279/546) [LB] bin/peaks2fixel g++ tmp/src/exec_version.o tmp/cmd/peaks2fixel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2fixel (280/546) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o (281/546) [LB] bin/sh2amp g++ tmp/cmd/sh2amp.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp (282/546) [CC] tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o (283/546) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (284/546) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o (285/546) [LB] bin/shbasis g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis (286/546) [CC] tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o (287/546) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o (288/546) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/interprocesscommunicator.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator.o (289/546) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o (290/546) [MOC] tmp/src/gui/mrview/window_moc.cpp moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp (291/546) [CC] tmp/src/gui/mrview/window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o (292/546) [CC] tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o (293/546) [CC] tmp/src/gui/mrview/mode/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o (294/546) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function 'void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]': ./core/math/SH.h:604:33: warning: '*AL[0]' may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (295/546) [LB] bin/tckgen g++ tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/algorithms/iFOD1.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tckgen.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/seeding.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen (296/546) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp (297/546) [CC] tmp/src/gui/mrview/tool/view_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o (298/546) [CC] tmp/src/gui/mrview/mode/slice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o (299/546) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (300/546) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o (301/546) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp (302/546) [CC] tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o (303/546) [CC] tmp/src/gui/mrview/tool/view.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o (304/546) [CC] tmp/src/gui/mrview/mode/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o (305/546) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp moc src/gui/mrview/sync/syncmanager.h -o tmp/src/gui/mrview/sync/syncmanager_moc.cpp (306/546) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/syncmanager_moc.cpp -o tmp/src/gui/mrview/sync/syncmanager_moc.o (307/546) [LB] bin/mtnormalise g++ tmp/src/exec_version.o tmp/cmd/mtnormalise.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise (308/546) [CC] tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o (309/546) [CC] tmp/src/gui/shapes/cube.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o (310/546) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp (311/546) [CC] tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o (312/546) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (313/546) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o (314/546) [CC] tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o (315/546) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o (316/546) [CC] tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o (317/546) [CC] tmp/src/gui/mrview/sync/syncmanager.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/syncmanager.cpp -o tmp/src/gui/mrview/sync/syncmanager.o (318/546) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp (319/546) [CC] tmp/src/gui/mrview/spin_box_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o (320/546) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o (321/546) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (322/546) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (323/546) [CC] tmp/src/gui/mrview/colourbars.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourbars.cpp -o tmp/src/gui/mrview/colourbars.o (324/546) [CC] tmp/src/gui/mrview/tool/overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o (325/546) [CC] tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o (326/546) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o (327/546) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp (328/546) [CC] tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o (329/546) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp (330/546) [CC] tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o (331/546) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (332/546) [CC] tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o (333/546) [CC] tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ cmd/mrview.cpp -o tmp/cmd/mrview.o (334/546) [CC] tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o (335/546) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp (336/546) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o (337/546) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp moc src/gui/mrview/sync/localsocketreader.h -o tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (338/546) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/localsocketreader_moc.cpp -o tmp/src/gui/mrview/sync/localsocketreader_moc.o (339/546) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (340/546) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o (341/546) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (342/546) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (343/546) [CC] tmp/src/colourmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/colourmap.cpp -o tmp/src/colourmap.o (344/546) [CC] tmp/src/gui/mrview/colourmap_menu.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_menu.cpp -o tmp/src/gui/mrview/colourmap_menu.o (345/546) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp (346/546) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o (347/546) [CC] tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o (348/546) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o (349/546) [CC] tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o (350/546) [MOC] tmp/src/gui/mrview/displayable_moc.cpp moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp (351/546) [CC] tmp/src/gui/mrview/displayable_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o (352/546) [CC] tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o (353/546) [CC] tmp/src/gui/mrview/tool/odf/preview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o (354/546) [CC] tmp/src/gui/mrview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/file_open.cpp -o tmp/src/gui/mrview/file_open.o (355/546) [RCC] tmp/src/gui/mrview/icons.cpp rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp (356/546) [CC] tmp/src/gui/mrview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o (357/546) [CC] tmp/src/gui/dialog/opengl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o (358/546) [CC] tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o (359/546) [CC] tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o (360/546) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp (361/546) [CC] tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o (362/546) [CC] tmp/src/gui/mrview/tool/connectome/selection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o (363/546) [CC] tmp/src/gui/mrview/sync/localsocketreader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/localsocketreader.cpp -o tmp/src/gui/mrview/sync/localsocketreader.o (364/546) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (365/546) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (366/546) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp moc src/gui/mrview/sync/interprocesscommunicator.h -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (367/546) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (368/546) [CC] tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o (369/546) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp moc src/gui/mrview/tool/transform.h -o tmp/src/gui/mrview/tool/transform_moc.cpp (370/546) [CC] tmp/src/gui/mrview/tool/transform_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/transform_moc.cpp -o tmp/src/gui/mrview/tool/transform_moc.o (371/546) [CC] tmp/src/gui/mrview/sync/client.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/client.cpp -o tmp/src/gui/mrview/sync/client.o (372/546) [CC] tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o (373/546) [CC] tmp/src/gui/dialog/image_properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o (374/546) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o (375/546) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp (376/546) [CC] tmp/src/gui/mrview/adjust_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o (377/546) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (378/546) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o (379/546) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o (380/546) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp (381/546) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o (382/546) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o (383/546) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o (384/546) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o (385/546) [CC] tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/aarch64-linux-gnu/qt5 -idirafter /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/aarch64-linux-gnu/qt5/QtSvg -idirafter /usr/include/aarch64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/aarch64-linux-gnu/qt5/QtGui -idirafter /usr/include/aarch64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/aarch64-linux-gnu/qt5/QtCore -idirafter /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o (386/546) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o (387/546) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/multi_contrast.cpp -o tmp/src/registration/multi_contrast.o (388/546) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o (389/546) [CC] tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o (390/546) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o (391/546) [CC] tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o (392/546) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o (393/546) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o (394/546) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o (395/546) [LB] bin/mrstats g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats (396/546) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o (397/546) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o (398/546) [CC] tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o (399/546) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o (400/546) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o (401/546) [CC] tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o (402/546) [LB] bin/mrview g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/gui.o tmp/src/gui/cursor.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/surface/mesh.o tmp/src/gui/mrview/combo_box_error.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/mrview/tool/transform.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/sync/processlock.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/mrview/sync/interprocesscommunicator.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/opengl/lighting.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/adjust_button.o tmp/src/gui/mrview/mode/base.o tmp/src/gui/crosshair.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/mode/slice.o tmp/src/surface/scalar.o tmp/src/gui/dialog/dicom.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/view.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/mrview/sync/syncmanager_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/shapes/cube.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/surface/polygon.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/dwi/renderer.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/sync/syncmanager.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/mrview/colourbars.o tmp/src/gui/mrview/tool/overlay.o tmp/src/gui/shapes/cylinder.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/exec_version.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/cmd/mrview.o tmp/src/connectome/lut.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/sync/localsocketreader_moc.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/colourmap.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/colourmap_menu.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/dialog/dialog.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/dwi/tractography/properties.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/gui/projection.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/file_open.o tmp/src/gui/mrview/icons.o tmp/src/gui/dialog/opengl.o tmp/src/gui/lighting_dock_moc.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/shapes/sphere.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/dwi/tractography/rng.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/mrview/sync/localsocketreader.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/tool/transform_moc.o tmp/src/gui/mrview/sync/client.o tmp/src/gui/mrview/window.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/dwi/tractography/roi.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/surface/mesh_multi.o tmp/src/gui/lighting_dock.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/color_button.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/surface/freesurfer.o tmp/src/gui/mrview/mode/ortho.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/aarch64-linux-gnu/libQt5OpenGL.so /usr/lib/aarch64-linux-gnu/libQt5Svg.so /usr/lib/aarch64-linux-gnu/libQt5Widgets.so /usr/lib/aarch64-linux-gnu/libQt5Gui.so /usr/lib/aarch64-linux-gnu/libQt5Network.so /usr/lib/aarch64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/mrview (403/546) [LB] bin/mrthreshold g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold (404/546) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o (405/546) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o (406/546) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o (407/546) [LB] bin/mrinfo g++ tmp/src/exec_version.o tmp/cmd/mrinfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo (408/546) [CC] tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o (409/546) [LB] bin/mrhistogram g++ tmp/src/exec_version.o tmp/cmd/mrhistogram.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram (410/546) [CC] tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o (411/546) [LB] bin/mrhistmatch g++ tmp/cmd/mrhistmatch.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch (412/546) [CC] tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o (413/546) [LB] bin/mredit g++ tmp/src/exec_version.o tmp/cmd/mredit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit (414/546) [CC] tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o (415/546) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o (416/546) [LB] bin/mrgrid g++ tmp/src/exec_version.o tmp/cmd/mrgrid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrgrid (417/546) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o (418/546) [LB] bin/mrdegibbs g++ tmp/src/exec_version.o tmp/cmd/mrdegibbs.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs (419/546) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (420/546) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o (421/546) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o (422/546) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (423/546) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o (424/546) [LB] bin/mrcolour g++ tmp/src/exec_version.o tmp/cmd/mrcolour.o tmp/src/colourmap.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcolour (425/546) [CC] tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o (426/546) [LB] bin/mrcheckerboardmask g++ tmp/src/exec_version.o tmp/cmd/mrcheckerboardmask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask (427/546) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o (428/546) [LB] bin/mrdump g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump (429/546) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o (430/546) [LB] bin/mrfilter g++ tmp/src/exec_version.o tmp/cmd/mrfilter.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter (431/546) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o (432/546) [LB] bin/mrmetric g++ tmp/src/registration/transform/rigid.o tmp/src/exec_version.o tmp/cmd/mrmetric.o tmp/src/registration/multi_contrast.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric (433/546) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o (434/546) [LB] bin/mrcentroid g++ tmp/src/exec_version.o tmp/cmd/mrcentroid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcentroid (435/546) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o (436/546) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o (437/546) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (438/546) [LB] bin/mrclusterstats g++ tmp/src/stats/permtest.o tmp/src/stats/cluster.o tmp/src/exec_version.o tmp/cmd/mrclusterstats.o tmp/src/stats/tfce.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats (439/546) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o (440/546) [LB] bin/meshfilter g++ tmp/cmd/meshfilter.o tmp/src/exec_version.o tmp/src/surface/filter/smooth.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o tmp/src/surface/mesh_multi.o tmp/src/connectome/connectome.o tmp/src/surface/filter/base.o tmp/src/surface/freesurfer.o tmp/src/surface/scalar.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter (441/546) [CC] tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o (442/546) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o (443/546) [LB] bin/meshconvert g++ tmp/cmd/meshconvert.o tmp/src/surface/polygon.o tmp/src/connectome/lut.o tmp/src/surface/mesh.o tmp/src/surface/mesh_multi.o tmp/src/connectome/connectome.o tmp/src/surface/filter/base.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/scalar.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert (444/546) [CC] tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o (445/546) [CC] tmp/cmd/labelstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelstats.cpp -o tmp/cmd/labelstats.o (446/546) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o (447/546) [LB] bin/mrcalc g++ tmp/src/exec_version.o tmp/cmd/mrcalc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc (448/546) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o (449/546) [LB] bin/maskdump g++ tmp/src/exec_version.o tmp/cmd/maskdump.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump (450/546) [CC] tmp/cmd/label2colour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o (451/546) [LB] bin/mrcat g++ tmp/src/exec_version.o tmp/cmd/mrcat.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat (452/546) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o (453/546) [LB] bin/labelstats g++ tmp/src/exec_version.o tmp/cmd/labelstats.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelstats (454/546) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o (455/546) [LB] bin/mesh2voxel g++ tmp/cmd/mesh2voxel.o tmp/src/surface/polygon.o tmp/src/connectome/lut.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/algo/mesh2image.o tmp/src/surface/filter/base.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh_multi.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/scalar.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel (456/546) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o (457/546) [LB] bin/mrmath g++ tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath (458/546) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o (459/546) [LB] bin/maskfilter g++ tmp/src/exec_version.o tmp/cmd/maskfilter.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter (460/546) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o (461/546) [LB] bin/label2colour g++ tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/exec_version.o tmp/cmd/label2colour.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour (462/546) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o (463/546) [LB] bin/mraverageheader g++ tmp/src/registration/transform/rigid.o tmp/src/exec_version.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/initialiser.o tmp/src/registration/multi_contrast.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader (464/546) [CC] tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o (465/546) [LB] bin/labelconvert g++ tmp/cmd/labelconvert.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert (466/546) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o (467/546) [LB] bin/mrconvert g++ tmp/src/exec_version.o tmp/cmd/mrconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert (468/546) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o (469/546) [LB] bin/label2mesh g++ tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh_multi.o tmp/src/connectome/lut.o tmp/src/exec_version.o tmp/cmd/label2mesh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh (470/546) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o (471/546) [CC] tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o (472/546) [LB] bin/fod2fixel g++ tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/cmd/fod2fixel.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/fmls.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel (473/546) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o (474/546) [CC] tmp/cmd/fixelconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o (475/546) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o (476/546) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o (477/546) [LB] bin/fixelreorient g++ tmp/src/exec_version.o tmp/cmd/fixelreorient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient (478/546) [CC] tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o (479/546) [LB] bin/mrtransform g++ tmp/src/exec_version.o tmp/cmd/mrtransform.o tmp/src/dwi/directions/predefined.o tmp/src/registration/multi_contrast.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform (480/546) [CC] tmp/cmd/fixel2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o (481/546) [LB] bin/fod2dec g++ tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec (482/546) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o (483/546) [CC] tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o (484/546) [LB] bin/fixelcrop g++ tmp/src/exec_version.o tmp/cmd/fixelcrop.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop (485/546) [CC] tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o (486/546) [CC] tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o (487/546) [LB] bin/fixelcorrespondence g++ tmp/src/exec_version.o tmp/cmd/fixelcorrespondence.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence (488/546) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o (489/546) [LB] bin/fixelconvert g++ tmp/src/exec_version.o tmp/cmd/fixelconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert (490/546) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o (491/546) [LB] bin/dwiextract g++ tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract (492/546) [CC] tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o (493/546) [LB] bin/fixel2sh g++ tmp/src/exec_version.o tmp/cmd/fixel2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh (494/546) [LB] bin/fixel2peaks g++ tmp/src/exec_version.o tmp/cmd/fixel2peaks.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2peaks (495/546) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/msmt_csd.cpp -o tmp/src/dwi/sdeconv/msmt_csd.o (496/546) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o (497/546) [LB] bin/fixelfilter g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/cmd/fixelfilter.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/fixel/filter/smooth.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/fixel/filter/connect.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelfilter (498/546) [LB] bin/fixelconnectivity g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/cmd/fixelconnectivity.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/properties.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/index_remapper.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconnectivity (499/546) [CC] tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o (500/546) [LB] bin/fixel2tsf g++ tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf (501/546) [CC] tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o (502/546) [CC] tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o (503/546) [LB] bin/fixelcfestats g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/fixel/filter/smooth.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/stats/permtest.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/directions/predefined.o tmp/cmd/fixelcfestats.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats (504/546) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o (505/546) [CC] tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o (506/546) [LB] bin/dirsplit g++ tmp/src/exec_version.o tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit (507/546) [CC] tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o (508/546) [LB] bin/dirmerge g++ tmp/src/exec_version.o tmp/src/dwi/directions/file.o tmp/cmd/dirmerge.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge (509/546) [CC] tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o (510/546) [LB] bin/dwi2tensor g++ tmp/src/exec_version.o tmp/cmd/dwi2tensor.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor (511/546) [CC] tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o (512/546) [LB] bin/fixel2voxel g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel (513/546) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o (514/546) [LB] bin/dcminfo g++ tmp/src/exec_version.o tmp/cmd/dcminfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo (515/546) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o (516/546) [LB] bin/dirgen g++ tmp/cmd/dirgen.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen (517/546) [LB] bin/dcmedit g++ tmp/src/exec_version.o tmp/cmd/dcmedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit (518/546) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o (519/546) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o (520/546) [LB] bin/dirflip g++ tmp/cmd/dirflip.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip (521/546) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (522/546) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o (523/546) [LB] bin/dirstat g++ tmp/src/exec_version.o tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat (524/546) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o (525/546) [CC] tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:548, from /usr/include/c++/14/cstring:43, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function 'void* memcpy(void*, const void*, size_t)', inlined from 'static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]' at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:527:11, inlined from 'void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]' at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:517:65, inlined from 'Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]' at /usr/include/eigen3/Eigen/src/Core/DenseStorage.h:593:27, inlined from 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]' at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'DWI2ADC::DWI2ADC(const DWI2ADC&)' at cmd/dwi2adc.cpp:50:7, inlined from 'MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]' at ./core/algo/threaded_loop.h:276:11, inlined from 'void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]' at ./core/algo/threaded_loop.h:376:19, inlined from 'void run()' at cmd/dwi2adc.cpp:109:10: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: '*(__int128 unsigned*)result' may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (526/546) [LB] bin/dwi2adc g++ tmp/src/exec_version.o tmp/cmd/dwi2adc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc (527/546) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (528/546) [LB] bin/connectomeedit g++ tmp/src/connectome/connectome.o tmp/cmd/connectomeedit.o tmp/src/exec_version.o tmp/src/connectome/enhance.o tmp/src/stats/tfce.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomeedit (529/546) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o (530/546) [LB] bin/dirorder g++ tmp/src/exec_version.o tmp/cmd/dirorder.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder (531/546) [CC] tmp/cmd/5ttcheck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o (532/546) [LB] bin/dwi2mask g++ tmp/src/exec_version.o tmp/cmd/dwi2mask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask (533/546) [CC] tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o (534/546) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (535/546) [LB] bin/connectomestats g++ tmp/src/connectome/connectome.o tmp/src/stats/permtest.o tmp/cmd/connectomestats.o tmp/src/exec_version.o tmp/src/connectome/enhance.o tmp/src/stats/tfce.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats (536/546) [LB] bin/5tt2vis g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2vis.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis (537/546) [LB] bin/5ttedit g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit (538/546) [LB] bin/connectome2tck g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck (539/546) [LB] bin/5ttcheck g++ tmp/src/dwi/tractography/seeding/list.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck (540/546) [LB] bin/5tt2gmwmi g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2gmwmi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi (541/546) [LB] bin/dwi2fod g++ tmp/src/dwi/sdeconv/csd.o tmp/cmd/dwi2fod.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/sdeconv/msmt_csd.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/aarch64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'Fixel::Fixel(const Fixel&)' at cmd/afdconnectivity.cpp:107:70, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]' at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]' at /usr/include/c++/14/bits/alloc_traits.h:575:17, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:117:30, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:1301:21, inlined from 'MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]' at src/dwi/fixel_map.h:47:28, inlined from 'MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = Fixel]' at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from 'MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = Fixel]' at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from 'AFDConnectivity::AFDConnectivity(MR::Image&, const MR::DWI::Directions::FastLookupSet&, const std::string&, const std::string&)' at cmd/afdconnectivity.cpp:131:26, inlined from 'void run()' at cmd/afdconnectivity.cpp:309:59: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In function 'void run()': src/dwi/fixel_map.h:47:29: note: '' declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (542/546) [LB] bin/afdconnectivity g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity (543/546) [LB] bin/amp2response g++ tmp/src/exec_version.o tmp/cmd/amp2response.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response (544/546) [LB] bin/amp2sh g++ tmp/cmd/amp2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh (545/546) [LB] bin/dwidenoise g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise (546/546) [LB] bin/mrregister g++ tmp/cmd/mrregister.o tmp/src/registration/linear.o tmp/src/exec_version.o tmp/src/registration/transform/affine.o tmp/src/registration/nonlinear.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/dwi/directions/predefined.o tmp/src/registration/transform/initialiser.o tmp/src/registration/multi_contrast.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_install # Remove __pycache__ dirs that were created in build time tests find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_installdocs dh_installchangelogs dh_installman dh_perl debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' cp debian/mrtrix3.links.in debian/mrtrix3.links : # Generate symlinks for all the mr* commands for f in debian/mrtrix3/usr/lib/mrtrix3/bin/*; do \ bn=$(basename $f); \ if [ "$bn" = "dirsplit" ]; then \ continue; \ fi; \ echo "usr/lib/mrtrix3/bin/$bn usr/bin/$bn" >> debian/mrtrix3.links; \ echo "/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/$bn.1.gz" >> debian/mrtrix3.links; \ done echo "/usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix3.links echo "/usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix3.links dh_link make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_compress -X.html make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_shlibdeps -l /build/reproducible-path/mrtrix3-3.0.4/lib dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mrtrix3-doc' in '../mrtrix3-doc_3.0.4-1_all.deb'. dpkg-deb: building package 'mrtrix3-dbgsym' in '../mrtrix3-dbgsym_3.0.4-1_arm64.deb'. dpkg-deb: building package 'mrtrix3' in '../mrtrix3_3.0.4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../mrtrix3_3.0.4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../mrtrix3_3.0.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3484005 and its subdirectories I: Current time: Thu Apr 2 20:56:18 -12 2026 I: pbuilder-time-stamp: 1775206578 Sat Mar 1 02:33:39 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Mar 1 02:33:39 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Mar 1 02:59:04 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Mar 1 02:59:05 UTC 2025 I: mrtrix3_3.0.4-1_arm64.changes: Format: 1.8 Date: Fri, 11 Aug 2023 16:34:05 +0200 Source: mrtrix3 Binary: mrtrix3 mrtrix3-dbgsym mrtrix3-doc Architecture: arm64 all Version: 3.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: mrtrix3 - diffusion-weighted MRI white matter tractography mrtrix3-doc - documentation for mrtrix3 Changes: mrtrix3 (3.0.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * eigen-3.4.patch: delete; applied upstream. * debian_build_cfg patch: unfuzz. * mrtrix_version.patch: unfuzz. * python3.patch: unfuzz. Checksums-Sha1: ca07cf0e3051be64d71bcd2f4a268f38613c3fa7 483778224 mrtrix3-dbgsym_3.0.4-1_arm64.deb f6b55ff023cd5a57654487da983a3b03c3da3843 48512 mrtrix3-doc_3.0.4-1_all.deb b472981c718b561fce3bead790aa8ab286fe30a6 16022 mrtrix3_3.0.4-1_arm64.buildinfo 56a5d8d7bdedc8c0ea1029821ffc55338808cf25 8966300 mrtrix3_3.0.4-1_arm64.deb Checksums-Sha256: 0824885d1b1f4f8a72d04d3aadca5f59faa23d1ca727a3ecdddb8665322ec8eb 483778224 mrtrix3-dbgsym_3.0.4-1_arm64.deb 7dad89bc09006c43b071b86f2a03d79ffa283d1976861bea425fcc2591fddfec 48512 mrtrix3-doc_3.0.4-1_all.deb 027c1628cd4e324465c3c926b3d9b2db14536718d771df191fb718b214b058a4 16022 mrtrix3_3.0.4-1_arm64.buildinfo 7ad7273aacd1dfbd12a162507041c2dbc13d140992e56f32a6e45a5024397140 8966300 mrtrix3_3.0.4-1_arm64.deb Files: ad00955ebd211f7b1b95f3c0e0ef3db7 483778224 debug optional mrtrix3-dbgsym_3.0.4-1_arm64.deb 89f77b0fe35d1cdea3dcadf00264bbb4 48512 doc optional mrtrix3-doc_3.0.4-1_all.deb ae8f5d50637d4d0069c106a3d1d6bb9c 16022 science optional mrtrix3_3.0.4-1_arm64.buildinfo 5d835be37892de7361fd58c6a302dce6 8966300 science optional mrtrix3_3.0.4-1_arm64.deb Sat Mar 1 02:59:06 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_2-76443.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RHBZH1Mu/mrtrix3_3.0.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RHBZH1Mu/mrtrix3_3.0.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RHBZH1Mu/mrtrix3_3.0.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RHBZH1Mu/b1/mrtrix3_3.0.4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RHBZH1Mu/b2/mrtrix3_3.0.4-1_arm64.changes ## close_archive (total time: 0.002s) 0.001s 150 calls diffoscope.comparators.xz.XzContainer 0.001s 140 calls diffoscope.comparators.deb.DebTarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 10 calls diffoscope.comparators.tar.TarContainer ## command (total time: 1828.127s) 477.438s 30714 calls readelf 409.001s 3201 calls diff 408.478s 138 calls objcopy 294.708s 4764 calls objdump 234.273s 150 calls xz 4.124s 759 calls strings 0.049s 18 calls cmp 0.049s 18 calls cmp (external) 0.007s 72 calls cmp (internal) ## compare_files (cumulative) (total time: 43535.802s) 7334.089s 1 call abc.DotChangesFile 7334.043s 1 call abc.DebFile 7333.956s 2 calls abc.XzFile 7333.246s 1 call abc.DebDataTarFile 7332.206s 69 calls abc.ElfFile 6815.321s 274 calls diffoscope.comparators.elf.ElfCodeSection 44.809s 1034 calls diffoscope.comparators.elf.ElfSection 8.060s 68 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.049s 1 call abc.TarFile 0.016s 1 call abc.TextFile 0.009s 1 call abc.Md5sumsFile ## container_extract (total time: 372.112s) 234.282s 150 calls diffoscope.comparators.xz.XzContainer 135.986s 598 calls diffoscope.comparators.deb.DebTarContainer 1.821s 152 calls diffoscope.comparators.deb.DebContainer 0.023s 12 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 85.273s) 85.273s 36780 calls linediff ## has_same_content_as (total time: 0.071s) 0.060s 69 calls abc.ElfFile 0.006s 1034 calls diffoscope.comparators.elf.ElfSection 0.002s 274 calls diffoscope.comparators.elf.ElfCodeSection 0.001s 68 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 2 calls abc.DebFile 0.000s 2 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.TarFile 0.000s 1 call abc.DebDataTarFile ## main (total time: 8973.821s) 8973.813s 2 calls outputs 0.008s 1 call cleanup ## open_archive (total time: 0.002s) 0.001s 140 calls diffoscope.comparators.deb.DebTarContainer 0.001s 150 calls diffoscope.comparators.xz.XzContainer 0.000s 10 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer ## output (total time: 1635.302s) 1623.496s 1 call html 6.240s 1 call text 5.565s 1 call json ## recognizes (total time: 385.873s) 241.897s 2000 calls diffoscope.comparators.utils.archive.ArchiveMember 139.765s 17706 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 4.114s 12 calls diffoscope.comparators.binary.FilesystemFile 0.096s 270 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 4.817s) 4.817s 1456 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 2h 29min 34.147s CPU time consumed: 3h 7min 16.559s Sat Mar 1 05:28:43 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Mar 1 05:28:43 UTC 2025 E: mrtrix3 failed to build reproducibly in trixie on arm64. Sat Mar 1 05:30:23 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Mar 1 05:30:23 UTC 2025 I: Submitting 20K b1/mrtrix3_3.0.4-1_arm64.buildinfo.asc Sat Mar 1 05:30:24 UTC 2025 I: Submitting 20K b2/mrtrix3_3.0.4-1_arm64.buildinfo.asc Sat Mar 1 05:30:25 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Mar 1 05:30:25 UTC 2025 I: Done submitting .buildinfo files. Sat Mar 1 05:30:25 UTC 2025 I: Removing signed mrtrix3_3.0.4-1_arm64.buildinfo.asc files: removed './b1/mrtrix3_3.0.4-1_arm64.buildinfo.asc' removed './b2/mrtrix3_3.0.4-1_arm64.buildinfo.asc'