Tue Mar 11 02:14:50 UTC 2025 I: starting to build mummer/trixie/arm64 on jenkins on '2025-03-11 02:14'
Tue Mar 11 02:14:50 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/63618/console.log
Tue Mar 11 02:14:50 UTC 2025 I: Downloading source for trixie/mummer=3.23+dfsg-8
--2025-03-11 02:14:50-- http://deb.debian.org/debian/pool/main/m/mummer/mummer_3.23%2bdfsg-8.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2173 (2.1K) [text/prs.lines.tag]
Saving to: ‘mummer_3.23+dfsg-8.dsc’
0K .. 100% 307M=0s
2025-03-11 02:14:50 (307 MB/s) - ‘mummer_3.23+dfsg-8.dsc’ saved [2173/2173]
Tue Mar 11 02:14:50 UTC 2025 I: mummer_3.23+dfsg-8.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: mummer
Binary: mummer, mummer-doc
Architecture: any all
Version: 3.23+dfsg-8
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Andreas Tille <tille@debian.org>, Charles Plessy <plessy@debian.org>
Homepage: https://mummer.sourceforge.net/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/mummer
Vcs-Git: https://salsa.debian.org/med-team/mummer.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended
Package-List:
mummer deb science optional arch=any
mummer-doc deb doc optional arch=all
Checksums-Sha1:
0dc589e7ceeb59d222ec21decf225ba193527330 1112616 mummer_3.23+dfsg.orig.tar.xz
01b4363663073e877e4562a7426f715d13a2eab8 416352 mummer_3.23+dfsg-8.debian.tar.xz
Checksums-Sha256:
1ef5eb11b22ff39d930ea9168ed6852a28be2c21e29ac791c4edcc86eca7d805 1112616 mummer_3.23+dfsg.orig.tar.xz
864d465c88d62db2150fe616ce20e3e640263e39b3d9eb85a3cef053d5ccec49 416352 mummer_3.23+dfsg-8.debian.tar.xz
Files:
64c8ac0f462885f9978b9e49accbc71f 1112616 mummer_3.23+dfsg.orig.tar.xz
16ae45f82d20b64c4eb583a8aef7275f 416352 mummer_3.23+dfsg-8.debian.tar.xz
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Tue Mar 11 02:14:50 UTC 2025 I: Checking whether the package is not for us
Tue Mar 11 02:14:50 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net.
Tue Mar 11 02:14:50 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Tue Mar 11 02:16:24 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Mar 10 14:14:53 -12 2025
I: pbuilder-time-stamp: 1741659293
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [mummer_3.23+dfsg-8.dsc]
I: copying [./mummer_3.23+dfsg.orig.tar.xz]
I: copying [./mummer_3.23+dfsg-8.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./mummer_3.23+dfsg-8.dsc: unsupported subcommand
dpkg-source: info: extracting mummer in mummer-3.23+dfsg
dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz
dpkg-source: info: unpacking mummer_3.23+dfsg-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_install_dirs.patch
dpkg-source: info: applying 02at_docs_web.diff
dpkg-source: info: applying enable_building_with_tetex.patch
dpkg-source: info: applying fix_sf_privacy_breach_issue.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying addition_from_mugsy.patch
dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch
dpkg-source: info: applying mummerplot.patch
dpkg-source: info: applying remove-csh-dependency.patch
dpkg-source: info: applying remove-csh-from-doc.patch
dpkg-source: info: applying reproducible-build.patch
dpkg-source: info: applying gnuplot.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1818257/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='cd98fc10d93248bd88b3f74854eaf3d8'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='1818257'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LFkJIcQw/pbuilderrc_ya8U --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LFkJIcQw/b1 --logfile b1/build.log mummer_3.23+dfsg-8.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/1818257/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19914 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
Package texlive-latex-base is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
Package texlive-latex-recommended is not installed.
pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
Package texlive-fonts-recommended is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libice6{a} libicu72{a} libkpathsea6{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libsm6{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-recommended{a} ucf{a} x11-common{a} xdg-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl linux-sysctl-defaults lmodern lynx psmisc shared-mime-info tex-gyre tipa wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded.
Need to get 80.0 MB of archives. After unpacking 264 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B]
Get: 14 http://deb.debian.org/debian trixie/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0050 [42.7 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 27 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 38 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB]
Get: 39 http://deb.debian.org/debian trixie/main arm64 fonts-lmodern all 2.005-1 [4540 kB]
Get: 40 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB]
Get: 41 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 42 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.47-1 [274 kB]
Get: 43 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 44 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB]
Get: 45 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 46 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 47 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 48 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 49 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 50 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 51 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 52 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 53 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 54 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB]
Get: 55 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 56 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB]
Get: 57 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.83.4-1 [1422 kB]
Get: 58 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 59 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB]
Get: 60 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB]
Get: 61 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB]
Get: 62 http://deb.debian.org/debian trixie/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5+b1 [154 kB]
Get: 63 http://deb.debian.org/debian trixie/main arm64 libmpfi0 arm64 1.5.4+ds-4 [34.5 kB]
Get: 64 http://deb.debian.org/debian trixie/main arm64 libpaper2 arm64 2.2.5-0.3+b1 [16.6 kB]
Get: 65 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 2.2.5-0.3+b1 [16.3 kB]
Get: 66 http://deb.debian.org/debian trixie/main arm64 libpotrace0 arm64 1.16-2+b2 [23.4 kB]
Get: 67 http://deb.debian.org/debian trixie/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5+b1 [48.2 kB]
Get: 68 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB]
Get: 69 http://deb.debian.org/debian trixie/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5+b1 [60.6 kB]
Get: 70 http://deb.debian.org/debian trixie/main arm64 libteckit0 arm64 2.5.12+ds1-1+b1 [303 kB]
Get: 71 http://deb.debian.org/debian trixie/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5+b1 [106 kB]
Get: 72 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB]
Get: 73 http://deb.debian.org/debian trixie/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB]
Get: 74 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b3 [53.4 kB]
Get: 75 http://deb.debian.org/debian trixie/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB]
Get: 76 http://deb.debian.org/debian trixie/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB]
Get: 77 http://deb.debian.org/debian trixie/main arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [59.4 kB]
Get: 78 http://deb.debian.org/debian trixie/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB]
Get: 79 http://deb.debian.org/debian trixie/main arm64 tex-common all 6.19 [29.4 kB]
Get: 80 http://deb.debian.org/debian trixie/main arm64 texlive-binaries arm64 2024.20240313.70630+ds-5+b1 [7357 kB]
Get: 81 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 82 http://deb.debian.org/debian trixie/main arm64 texlive-base all 2024.20250114-1 [22.8 MB]
Get: 83 http://deb.debian.org/debian trixie/main arm64 texlive-fonts-recommended all 2024.20250114-1 [4991 kB]
Get: 84 http://deb.debian.org/debian trixie/main arm64 texlive-latex-base all 2024.20250114-1 [1282 kB]
Get: 85 http://deb.debian.org/debian trixie/main arm64 texlive-latex-recommended all 2024.20250114-1 [8760 kB]
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update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up texlive-base (2024.20250114-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up texlive-latex-base (2024.20250114-1) ...
Setting up texlive-latex-recommended (2024.20250114-1) ...
Setting up texlive-fonts-recommended (2024.20250114-1) ...
Processing triggers for libc-bin (2.40-7) ...
Processing triggers for tex-common (6.19) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes
dpkg-buildpackage: info: source package mummer
dpkg-buildpackage: info: source version 3.23+dfsg-8
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_auto_clean
make -j12 clean
make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg'
rm -f *~ core*
cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make clean
make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz'
rm -f *~
cd libbasedir; make clean
make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir'
rm -f *.splint
rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~
make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir'
cd streesrc; make clean
make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc'
rm -f *.splint
rm -f *.[aox] *~
make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc'
cd mm3src; make clean
make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src'
rm -f *.splint
rm -f *.[ox] shit[123] *~
cd /build/reproducible-path/mummer-3.23+dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer
make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src'
make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz'
cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make clean
make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr'
rm -f *.o *~
cd /build/reproducible-path/mummer-3.23+dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf
cd /build/reproducible-path/mummer-3.23+dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf
make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr'
cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make clean
make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts'
rm -f *~
cd /build/reproducible-path/mummer-3.23+dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff
make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts'
cd /build/reproducible-path/mummer-3.23+dfsg/docs; make clean
make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs'
rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf
make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs'
make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg'
[ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin
[ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer
dh_auto_build -- BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer \
FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \
FINAL_SCRIPT_DIR=/usr/share/perl5/ \
CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" LDFLAGS="-Wl,-z,relro -Wl,-z,now"
make -j12 "INSTALL=install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" "LDFLAGS=-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg'
cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make mummer
cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all
cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make all
make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz'
cd libbasedir; make libbase.a
make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts'
make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr'
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o
make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir'
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c
cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin
/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \
-e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \
mapview.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems
/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \
-e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \
-e 's?__BIN_DIR?/usr/bin?g' \
mummerplot.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot
/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \
-e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \
-e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \
-e 's?__BIN_DIR?/usr/bin?g' \
nucmer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c
/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \
-e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \
-e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \
-e 's?__BIN_DIR?/usr/bin?g' \
promer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c
cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin
cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3
/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \
nucmer2xfig.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig
/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \
-e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \
-e 's?__BIN_DIR?/usr/bin?g' \
dnadiff.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig
chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff
make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts'
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c
ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o
ar: `u' modifier ignored since `D' is the default (see `U')
ar: creating libbase.a
a - cleanMUMcand.o
a - clock.o
a - mapfile.o
a - multiseq.o
a - procopt.o
a - safescpy.o
a - seterror.o
a - space.o
make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir'
cd streesrc; make libstree.a
make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc'
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c
tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)':
tigrinc.cc:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
335 | fgets (Line, MAX_LINE, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
tigrinc.cc: In function 'int Read_File(FILE*, long int&, std::map<std::__cxx11::basic_string<char>, char*>&, int)':
tigrinc.cc:452:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
452 | fgets (Line, MAX_LINE, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o
ar: `u' modifier ignored since `D' is the default (see `U')
ar: creating libstree.a
a - construct.o
a - access.o
a - scanpref.o
a - linkloc.o
a - depthtab.o
a - ex2leav.o
a - dfs.o
a - overmax.o
a - oversucc.o
a - addleafcount.o
a - iterator.o
make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc'
cd mm3src; make mummer
make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src'
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c
/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c
/usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \
-o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer
make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src'
make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz'
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match
mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)':
mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
533 | label = "#\n";
| ^~~~~
mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)':
mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
620 | label = "#\n";
| ^~~~~
combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps"
| ^~~~~~~~~~~~~~~~~
combineMUMs.cc:109:27: note: in expansion of macro 'DEFAULT_ERROR_FILE_NAME'
109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME;
| ^~~~~~~~~~~~~~~~~~~~~~~
combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
135 | char * Query_Suffix = "Query";
| ^~~~~~~
combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
145 | char * Ref_Suffix = "Ref";
| ^~~~~
combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)':
combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1481 | fgets (Line, MAX_LINE, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks
/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf
delta2blocks.cc: In function 'void printAlignments(std::vector<AlignStats>, char*, char*, char*, char*)':
delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=]
408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ);
| ~^ ~~~~~~
| | |
| int long int
| %ld
delta2blocks.cc:408:26: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=]
408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ);
| ~^ ~~~~~~
| | |
| int long int
| %ld
delta2blocks.cc:408:29: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=]
408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ);
| ~^ ~~~~~~
| | |
| int long int
| %ld
delta2blocks.cc:408:32: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long int' [-Wformat=]
408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ);
| ~^ ~~~~~~
| | |
| int long int
| %ld
show-coords.cc: In function 'void printBtab(std::vector<AlignStats>)':
show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
799 | type = "NUCMER";
| ^~~~~~~~
show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
801 | type = "PROMER";
| ^~~~~~~~
show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
803 | type = "NULL";
| ^~~~~~
delta2maf.cc: In function 'void printAlignments(std::vector<AlignStats>, char*, char*, std::map<std::__cxx11::basic_string<char>, char*>&)':
delta2maf.cc:547:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=]
547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR));
| ~^ ~~~~~~~~~~~~~~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:587:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ);
| ~^ ~~~~
| | |
| int long int
| %ld
delta2maf.cc:587:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=]
587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ);
| ~^ ~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:587:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=]
587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ);
| ~^ ~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:590:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ);
| ~^ ~~~~
| | |
| int long int
| %ld
delta2maf.cc:590:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=]
590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ);
| ~^ ~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:590:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=]
590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ);
| ~^ ~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:597:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR);
| ~^ ~~~~
| | |
| int long int
| %ld
delta2maf.cc:597:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=]
597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR);
| ~^ ~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:597:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=]
597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR);
| ~^ ~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:600:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR);
| ~^ ~~~~
| | |
| int long int
| %ld
delta2maf.cc:600:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=]
600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR);
| ~^ ~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:600:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=]
600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR);
| ~^ ~~~~~~~
| | |
| int long int
| %ld
delta2maf.cc:633:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=]
633 | printf("%s", &Buff2);
| ~^ ~~~~~~
| | |
| | char (*)[(Screen_Width + 1)]
| char*
delta2maf.cc:637:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=]
637 | printf("%s", &Buff1);
| ~^ ~~~~~~
| | |
| | char (*)[(Screen_Width + 1)]
| char*
delta2maf.cc:659:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=]
659 | printf("%s", &Buff2);
| ~^ ~~~~~~
| | |
| | char (*)[(Screen_Width + 1)]
| char*
delta2maf.cc:663:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=]
663 | printf("%s", &Buff1);
| ~^ ~~~~~~
| | |
| | char (*)[(Screen_Width + 1)]
| char*
delta2maf.cc:710:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=]
710 | printf("%s", &Buff2);
| ~^ ~~~~~~
| | |
| | char (*)[(Screen_Width + 1)]
| char*
delta2maf.cc:714:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=]
714 | printf("%s", &Buff1);
| ~^ ~~~~~~
| | |
| | char (*)[(Screen_Width + 1)]
| char*
delta2maf.cc:732:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=]
732 | printf("%s", &Buff2);
| ~^ ~~~~~~
| | |
| | char (*)[(Screen_Width + 1)]
| char*
delta2maf.cc:736:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=]
736 | printf("%s", &Buff1);
| ~^ ~~~~~~
| | |
| | char (*)[(Screen_Width + 1)]
| char*
make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr'
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pdflatex maxmat3man
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LaTeX Warning: There were undefined references.
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmr12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmti12.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/
fonts/type1/urw/times/utmri8a.pfb>
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Transcript written on maxmat3man.log.
pdflatex maxmat3man
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist/fonts/typ
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make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs'
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dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_arm64.deb'.
dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_arm64.deb'.
dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'.
dpkg-genbuildinfo --build=binary -O../mummer_3.23+dfsg-8_arm64.buildinfo
dpkg-genchanges --build=binary -O../mummer_3.23+dfsg-8_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1818257 and its subdirectories
I: Current time: Mon Mar 10 14:16:22 -12 2025
I: pbuilder-time-stamp: 1741659382
Tue Mar 11 02:16:24 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Tue Mar 11 02:16:24 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Tue Mar 11 02:21:35 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Tue Mar 11 02:21:35 UTC 2025 I: mummer_3.23+dfsg-8_arm64.changes:
Format: 1.8
Date: Sun, 04 Dec 2022 12:29:43 +0100
Source: mummer
Binary: mummer mummer-dbgsym mummer-doc
Architecture: arm64 all
Version: 3.23+dfsg-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
mummer - Efficient sequence alignment of full genomes
mummer-doc - Documentation for MUMmer
Closes: 956751
Changes:
mummer (3.23+dfsg-8) unstable; urgency=medium
.
* d/watch: Fix name of upstream tarball
* Apply hint by Étienne Mollier to fit current gnuplot version
Closes: #956751
* Use secure URI in Homepage field.
* Update standards version to 4.6.1, no changes needed.
Checksums-Sha1:
cbfb0d5ca77d8f6a9cac2129abc3d2d4608880de 3257640 mummer-dbgsym_3.23+dfsg-8_arm64.deb
defaf5356ec3d7534bc7ca4a026d62811559f670 1314548 mummer-doc_3.23+dfsg-8_all.deb
645acd08a44440c3b5f6c246d14002bff77553e0 6889 mummer_3.23+dfsg-8_arm64.buildinfo
d5b154036ce4067209f170638ca6b8118fe32e87 644572 mummer_3.23+dfsg-8_arm64.deb
Checksums-Sha256:
6235b2856ba726abc59fa38de64813f221a2520dcc952ce74c5c419b239f019d 3257640 mummer-dbgsym_3.23+dfsg-8_arm64.deb
4ed296c37be4593590dcca0d8cfcd6ede2798f1ba0157bd06697b200e12a8afd 1314548 mummer-doc_3.23+dfsg-8_all.deb
d4e5f266cbc0dd5e601cecdc96e531c5afb2cbdf853896bc01a50dd5a17835a3 6889 mummer_3.23+dfsg-8_arm64.buildinfo
58f5578454230db8e54e85ac7fd3dd506555441342897b89e5d6388311fb4f37 644572 mummer_3.23+dfsg-8_arm64.deb
Files:
70801be7bbf80aba80d730a8a2d71ad6 3257640 debug optional mummer-dbgsym_3.23+dfsg-8_arm64.deb
d16efc7e62057e4207b21462a08b66b2 1314548 doc optional mummer-doc_3.23+dfsg-8_all.deb
c579f76190e17556683b741894a035a6 6889 science optional mummer_3.23+dfsg-8_arm64.buildinfo
c15a0794142b8a81e4a441496f0480bc 644572 science optional mummer_3.23+dfsg-8_arm64.deb
Tue Mar 11 02:21:37 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_9-63618.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.LFkJIcQw/mummer_3.23+dfsg-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.LFkJIcQw/mummer_3.23+dfsg-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.LFkJIcQw/mummer_3.23+dfsg-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.LFkJIcQw/b1/mummer_3.23+dfsg-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.LFkJIcQw/b2/mummer_3.23+dfsg-8_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 235ms
CPU time consumed: 232ms
Tue Mar 11 02:21:37 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Tue Mar 11 02:21:37 UTC 2025 I: mummer from trixie built successfully and reproducibly on arm64.
Tue Mar 11 02:21:38 UTC 2025 I: Submitting .buildinfo files to external archives:
Tue Mar 11 02:21:38 UTC 2025 I: Submitting 8.0K b1/mummer_3.23+dfsg-8_arm64.buildinfo.asc
Tue Mar 11 02:21:40 UTC 2025 I: Submitting 8.0K b2/mummer_3.23+dfsg-8_arm64.buildinfo.asc
Tue Mar 11 02:21:40 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Tue Mar 11 02:21:40 UTC 2025 I: Done submitting .buildinfo files.
Tue Mar 11 02:21:40 UTC 2025 I: Removing signed mummer_3.23+dfsg-8_arm64.buildinfo.asc files:
removed './b1/mummer_3.23+dfsg-8_arm64.buildinfo.asc'
removed './b2/mummer_3.23+dfsg-8_arm64.buildinfo.asc'