Sat Mar 8 10:49:44 UTC 2025 I: starting to build ntcard/trixie/arm64 on jenkins on '2025-03-08 10:49'
Sat Mar 8 10:49:44 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/52482/console.log
Sat Mar 8 10:49:44 UTC 2025 I: Downloading source for trixie/ntcard=1.2.2+dfsg-9
--2025-03-08 10:49:44-- http://deb.debian.org/debian/pool/main/n/ntcard/ntcard_1.2.2%2bdfsg-9.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2157 (2.1K) [text/prs.lines.tag]
Saving to: ‘ntcard_1.2.2+dfsg-9.dsc’
0K .. 100% 355M=0s
2025-03-08 10:49:44 (355 MB/s) - ‘ntcard_1.2.2+dfsg-9.dsc’ saved [2157/2157]
Sat Mar 8 10:49:45 UTC 2025 I: ntcard_1.2.2+dfsg-9.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: ntcard
Binary: ntcard
Architecture: any
Version: 1.2.2+dfsg-9
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <nilesh@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/bcgsc/ntCard
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/ntcard
Vcs-Git: https://salsa.debian.org/med-team/ntcard.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), architecture-is-64-bit
Package-List:
ntcard deb science optional arch=any
Checksums-Sha1:
41dbffe6384de113dec420f1cb68f90969aa03db 62710 ntcard_1.2.2+dfsg.orig.tar.gz
3bef27e49643b9f185c5ced8a064de883f2dc5a3 772540 ntcard_1.2.2+dfsg-9.debian.tar.xz
Checksums-Sha256:
74d063a840f04ede0442c7ca061b569ac5423b9632beb120d80e283728ac5345 62710 ntcard_1.2.2+dfsg.orig.tar.gz
60253be65690bfc5beaeedb84f60bd09d8150a746a68e4a2dd32eee378fea253 772540 ntcard_1.2.2+dfsg-9.debian.tar.xz
Files:
184d4ad9728fdc3c6a1f301e07d2fa20 62710 ntcard_1.2.2+dfsg.orig.tar.gz
4b6bbb6540873cb088c1912bd7897744 772540 ntcard_1.2.2+dfsg-9.debian.tar.xz
Dgit: f073d01f618e89b92590105e8d4faec8bf47a4e8 debian archive/debian/1.2.2+dfsg-9 https://git.dgit.debian.org/ntcard
-----BEGIN PGP SIGNATURE-----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=B7dz
-----END PGP SIGNATURE-----
Sat Mar 8 10:49:45 UTC 2025 I: Checking whether the package is not for us
Sat Mar 8 10:49:45 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net.
Sat Mar 8 10:49:45 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Sat Mar 8 10:50:28 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Mar 7 22:49:46 -12 2025
I: pbuilder-time-stamp: 1741430986
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [ntcard_1.2.2+dfsg-9.dsc]
I: copying [./ntcard_1.2.2+dfsg.orig.tar.gz]
I: copying [./ntcard_1.2.2+dfsg-9.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./ntcard_1.2.2+dfsg-9.dsc: unsupported subcommand
dpkg-source: info: extracting ntcard in ntcard-1.2.2+dfsg
dpkg-source: info: unpacking ntcard_1.2.2+dfsg.orig.tar.gz
dpkg-source: info: unpacking ntcard_1.2.2+dfsg-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-packaged-nthash.patch
dpkg-source: info: applying fix-clean-target.patch
dpkg-source: info: applying fixup-configure.ac.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2405556/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='61a4db3ad8af42ed8378115f9d7780ee'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2405556'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VIaQ7kYr/pbuilderrc_9m1E --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VIaQ7kYr/b1 --logfile b1/build.log ntcard_1.2.2+dfsg-9.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2405556/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), architecture-is-64-bit
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19914 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however:
Package architecture-is-64-bit is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.1 MB of archives. After unpacking 80.2 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 architecture-properties arm64 0.2.6 [2336 B]
Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Fetched 20.1 MB in 0s (192 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19914 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:arm64.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.4-5_arm64.deb ...
Unpacking bsdextrautils (2.40.4-5) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package architecture-properties:arm64.
Preparing to unpack .../10-architecture-properties_0.2.6_arm64.deb ...
Unpacking architecture-properties:arm64 (0.2.6) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.19-7_arm64.deb ...
Unpacking m4 (1.4.19-7) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../12-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../14-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../16-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.5.4-3_all.deb ...
Unpacking libtool (2.5.4-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:arm64.
Preparing to unpack .../22-libelf1t64_0.192-4_arm64.deb ...
Unpacking libelf1t64:arm64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:arm64.
Preparing to unpack .../24-libunistring5_1.3-1_arm64.deb ...
Unpacking libunistring5:arm64 (1.3-1) ...
Selecting previously unselected package libicu72:arm64.
Preparing to unpack .../25-libicu72_72.1-6_arm64.deb ...
Unpacking libicu72:arm64 (72.1-6) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b2_arm64.deb ...
Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.23.1-1_arm64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../30-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Setting up libpipeline1:arm64 (1.5.8-1) ...
Setting up libicu72:arm64 (72.1-6) ...
Setting up bsdextrautils (2.40.4-5) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up architecture-properties:arm64 (0.2.6) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libmagic1t64:arm64 (1:5.45-3+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-7) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/ntcard-1.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ntcard_1.2.2+dfsg-9_source.changes
dpkg-buildpackage: info: source package ntcard
dpkg-buildpackage: info: source version 1.2.2+dfsg-9
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
configure.ac:7: warning: The macro 'AC_CONFIG_HEADER' is obsolete.
configure.ac:7: You should run autoupdate.
./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
configure.ac:7: the top level
configure.ac:29: warning: The macro 'AC_HEADER_STDC' is obsolete.
configure.ac:29: You should run autoupdate.
./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from...
configure.ac:29: the top level
configure.ac:38: warning: The macro 'AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED.
./lib/autoconf/functions.m4:1785: AC_FUNC_SETVBUF_REVERSED is expanded from...
configure.ac:38: the top level
configure.ac:19: installing './compile'
configure.ac:35: installing './config.guess'
configure.ac:35: installing './config.sub'
configure.ac:5: installing './install-sh'
configure.ac:5: installing './missing'
Makefile.am: installing './depcomp'
debian/rules execute_before_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
cp -a debian/vendor/*.hpp /build/reproducible-path/ntcard-1.2.2+dfsg
make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
dh_auto_configure
./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking for gawk... (cached) mawk
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking for ranlib... ranlib
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for vfork.h... no
checking for dlfcn.h... yes
checking for fcntl.h... yes
checking for float.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for sys/param.h... yes
checking for zlib.h... no
checking for _Bool... yes
checking for stdbool.h that conforms to C99 or later... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for dup2... yes
checking for gethostname... yes
checking for getopt_long... yes
checking for getpagesize... yes
checking for memset... yes
checking for strdup... yes
checking for strerror... yes
checking for strtoul... yes
checking for pid_t... yes
checking for fork... yes
checking for vfork... yes
checking for vprintf... yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking build system type... aarch64-unknown-linux-gnu
checking host system type... aarch64-unknown-linux-gnu
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for GNU libc compatible realloc... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for ptrdiff_t... yes
checking for mode_t... yes
checking for pid_t... (cached) yes
checking for size_t... yes
checking for ssize_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for sqrt in -lm... yes
checking for pow... yes
checking for sqrt... yes
checking for ceilf... yes
checking for dlsym in -ldl... yes
checking for gzwrite in -lz... no
checking for g++ option to support OpenMP... -fopenmp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating data/Makefile
config.status: creating config.h
config.status: executing depfiles commands
dh_auto_build
make -j12
make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
make all-recursive
make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
Making all in data
make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data'
make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ntcard-ntcard.o `test -f 'ntcard.cpp' || echo './'`ntcard.cpp
g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o nthll-nthll.o `test -f 'nthll.cpp' || echo './'`nthll.cpp
g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/ntcard-Uncompress.o `test -f 'Common/Uncompress.cpp' || echo './'`Common/Uncompress.cpp
g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/ntcard-SignalHandler.o `test -f 'Common/SignalHandler.cpp' || echo './'`Common/SignalHandler.cpp
g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/ntcard-Fcontrol.o `test -f 'Common/Fcontrol.cpp' || echo './'`Common/Fcontrol.cpp
g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/nthll-Uncompress.o `test -f 'Common/Uncompress.cpp' || echo './'`Common/Uncompress.cpp
g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/nthll-SignalHandler.o `test -f 'Common/SignalHandler.cpp' || echo './'`Common/SignalHandler.cpp
g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/nthll-Fcontrol.o `test -f 'Common/Fcontrol.cpp' || echo './'`Common/Fcontrol.cpp
g++ -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -Wl,-z,relro -Wl,-z,now -o nthll Common/nthll-Uncompress.o Common/nthll-SignalHandler.o Common/nthll-Fcontrol.o nthll-nthll.o -ldl -lm
g++ -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -Wl,-z,relro -Wl,-z,now -o ntcard Common/ntcard-Uncompress.o Common/ntcard-SignalHandler.o Common/ntcard-Fcontrol.o ntcard-ntcard.o -ldl -lm
make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
echo "I: Tests try to download external files, skip build time tests"
I: Tests try to download external files, skip build time tests
make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/ntcard/
make -j12 install DESTDIR=/build/reproducible-path/ntcard-1.2.2\+dfsg/debian/ntcard AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
Making install in data
make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data'
make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data'
make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data'
make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
/usr/bin/mkdir -p '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/bin'
/usr/bin/mkdir -p '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/share/doc/ntcard'
/usr/bin/install -c -m 644 ChangeLog CITATION.bib LICENSE README.md '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/share/doc/ntcard'
/usr/bin/install -c ntcard nthll '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/bin'
make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
dh_installdocs
debian/rules execute_after_dh_installdocs
make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
find debian -name 'LICENSE' | xargs rm -rf
make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg'
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'ntcard' in '../ntcard_1.2.2+dfsg-9_arm64.deb'.
dpkg-deb: building package 'ntcard-dbgsym' in '../ntcard-dbgsym_1.2.2+dfsg-9_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../ntcard_1.2.2+dfsg-9_arm64.buildinfo
dpkg-genchanges --build=binary -O../ntcard_1.2.2+dfsg-9_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2405556 and its subdirectories
I: Current time: Fri Mar 7 22:50:26 -12 2025
I: pbuilder-time-stamp: 1741431026
Sat Mar 8 10:50:30 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Sat Mar 8 10:50:30 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Sat Mar 8 10:51:23 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Sat Mar 8 10:51:24 UTC 2025 I: ntcard_1.2.2+dfsg-9_arm64.changes:
Format: 1.8
Date: Thu, 01 Aug 2024 22:58:36 +0200
Source: ntcard
Binary: ntcard ntcard-dbgsym
Architecture: arm64
Version: 1.2.2+dfsg-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
ntcard - Streaming algorithm to estimate cardinality in genomics datasets
Closes: 1075324
Changes:
ntcard (1.2.2+dfsg-9) unstable; urgency=medium
.
* d/v/nthash.hpp: fix an off-by-one error spotted by gcc-14.
(Closes: #1075324)
* fixup-configure.ac.patch: new: fix configure script issue:
./configure: line 3675: test: syntax error: `-O2' unexpected
* d/control: declare compliance to standards version 4.7.0.
* d/control: declare architecture-is-64-bit.
Checksums-Sha1:
3f345b3f06f36f7ee29353e2e1d70540eb0f0994 308844 ntcard-dbgsym_1.2.2+dfsg-9_arm64.deb
d70d6ed06d3da2b8bf4a7d89f2aa858ac0667ece 4904 ntcard_1.2.2+dfsg-9_arm64.buildinfo
f95020dbc26f4b3a8dd4e698f2a7056c9062d72f 40064 ntcard_1.2.2+dfsg-9_arm64.deb
Checksums-Sha256:
048c34d24a76c4b0483f4094aeac88d4658e1728f15f0af1c37fa89c07c51a23 308844 ntcard-dbgsym_1.2.2+dfsg-9_arm64.deb
8654d55892f57b29b12156eb8c9a5a65be79f4326fdcbab3f06b03c523985b6c 4904 ntcard_1.2.2+dfsg-9_arm64.buildinfo
bfc8051d803c76f81ba7c27e1739642011d748b1ba106be0324c3f9355efb5ce 40064 ntcard_1.2.2+dfsg-9_arm64.deb
Files:
b8fed4ca2e8787054e664db9ed3bbcf0 308844 debug optional ntcard-dbgsym_1.2.2+dfsg-9_arm64.deb
3dabd97f04a1bb9ae7bf1723478646dd 4904 science optional ntcard_1.2.2+dfsg-9_arm64.buildinfo
b40a1118aa203988de35342e568e4d43 40064 science optional ntcard_1.2.2+dfsg-9_arm64.deb
Sat Mar 8 10:51:25 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_8-52482.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VIaQ7kYr/ntcard_1.2.2+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VIaQ7kYr/ntcard_1.2.2+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VIaQ7kYr/ntcard_1.2.2+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VIaQ7kYr/b1/ntcard_1.2.2+dfsg-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.VIaQ7kYr/b2/ntcard_1.2.2+dfsg-9_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 227ms
CPU time consumed: 228ms
Sat Mar 8 10:51:26 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Sat Mar 8 10:51:26 UTC 2025 I: ntcard from trixie built successfully and reproducibly on arm64.
Sat Mar 8 10:51:27 UTC 2025 I: Submitting .buildinfo files to external archives:
Sat Mar 8 10:51:27 UTC 2025 I: Submitting 8.0K b1/ntcard_1.2.2+dfsg-9_arm64.buildinfo.asc
Sat Mar 8 10:51:44 UTC 2025 I: Submitting 8.0K b2/ntcard_1.2.2+dfsg-9_arm64.buildinfo.asc
Sat Mar 8 10:51:56 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Mar 8 10:51:56 UTC 2025 I: Done submitting .buildinfo files.
Sat Mar 8 10:51:56 UTC 2025 I: Removing signed ntcard_1.2.2+dfsg-9_arm64.buildinfo.asc files:
removed './b1/ntcard_1.2.2+dfsg-9_arm64.buildinfo.asc'
removed './b2/ntcard_1.2.2+dfsg-9_arm64.buildinfo.asc'