Fri Feb 14 05:32:23 UTC 2025 I: starting to build nthash/trixie/arm64 on jenkins on '2025-02-14 05:32'
Fri Feb 14 05:32:23 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/57219/console.log
Fri Feb 14 05:32:23 UTC 2025 I: Downloading source for trixie/nthash=2.3.0+dfsg-2
--2025-02-14 05:32:23-- http://deb.debian.org/debian/pool/main/n/nthash/nthash_2.3.0%2bdfsg-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1467 (1.4K) [text/prs.lines.tag]
Saving to: ‘nthash_2.3.0+dfsg-2.dsc’
0K . 100% 220M=0s
2025-02-14 05:32:23 (220 MB/s) - ‘nthash_2.3.0+dfsg-2.dsc’ saved [1467/1467]
Fri Feb 14 05:32:23 UTC 2025 I: nthash_2.3.0+dfsg-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: nthash
Binary: libnthash-dev, nthash
Architecture: any
Version: 2.3.0+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Homepage: https://github.com/bcgsc/ntHash
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/nthash
Vcs-Git: https://salsa.debian.org/med-team/nthash.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential
Build-Depends: debhelper-compat (= 13), cmake, libbtllib-dev, libomp-dev, libargparse-dev
Package-List:
libnthash-dev deb libdevel optional arch=any
nthash deb science optional arch=any
Checksums-Sha1:
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6038526eb6dc26344b3ac80cd93208d4ff85b18e 5064 nthash_2.3.0+dfsg-2.debian.tar.xz
Checksums-Sha256:
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6deff4aae3b18f03ed839d9f95324d9019a7f7cde752be0aab4b163a0d488aca 5064 nthash_2.3.0+dfsg-2.debian.tar.xz
Files:
5dea1bb8633987135a6303e17b518743 149256 nthash_2.3.0+dfsg.orig.tar.xz
6a1b16e3880df4d3296441198e6cb6a6 5064 nthash_2.3.0+dfsg-2.debian.tar.xz
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Fri Feb 14 05:32:23 UTC 2025 I: Checking whether the package is not for us
Fri Feb 14 05:32:23 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net.
Fri Feb 14 05:32:23 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Fri Feb 14 05:33:08 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Feb 13 17:32:25 -12 2025
I: pbuilder-time-stamp: 1739511145
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [nthash_2.3.0+dfsg-2.dsc]
I: copying [./nthash_2.3.0+dfsg.orig.tar.xz]
I: copying [./nthash_2.3.0+dfsg-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./nthash_2.3.0+dfsg-2.dsc: unsupported subcommand
dpkg-source: info: extracting nthash in nthash-2.3.0+dfsg
dpkg-source: info: unpacking nthash_2.3.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking nthash_2.3.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_btllib.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3116758/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='d60b00966f0343f8aa563a96d50e576f'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3116758'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8kbRdkte/pbuilderrc_o1S0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8kbRdkte/b1 --logfile b1/build.log nthash_2.3.0+dfsg-2.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3116758/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, libbtllib-dev, libomp-dev, libargparse-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19922 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on libbtllib-dev; however:
Package libbtllib-dev is not installed.
pbuilder-satisfydepends-dummy depends on libomp-dev; however:
Package libomp-dev is not installed.
pbuilder-satisfydepends-dummy depends on libargparse-dev; however:
Package libargparse-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libargparse-dev{a} libbrotli1{a} libbtllib-dev{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libjs-d3{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libomp-19-dev{a} libomp-dev{a} libomp5-19{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3.13{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsdsl-dev{a} libsdsl3{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} wget{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults psmisc publicsuffix
0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded.
Need to get 79.6 MB of archives. After unpacking 380 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 wget arm64 1.24.5-2 [966 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.5-2 [2267 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 38 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 39 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 40 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 41 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 42 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 43 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 44 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 45 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 46 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 47 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.0+git20250209.89ed161+ds-1 [326 kB]
Get: 48 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 49 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get: 50 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get: 51 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB]
Get: 52 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.5-2 [9907 kB]
Get: 53 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 54 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 55 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 56 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 57 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 58 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 59 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 60 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 61 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 62 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 63 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 64 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Get: 65 http://deb.debian.org/debian trixie/main arm64 libargparse-dev arm64 3.1-1 [20.1 kB]
Get: 66 http://deb.debian.org/debian trixie/main arm64 libcpptoml-dev all 0.1.1-3 [180 kB]
Get: 67 http://deb.debian.org/debian trixie/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB]
Get: 68 http://deb.debian.org/debian trixie/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB]
Get: 69 http://deb.debian.org/debian trixie/main arm64 libjs-d3 all 3.5.17-4 [132 kB]
Get: 70 http://deb.debian.org/debian trixie/main arm64 libsdsl3 arm64 2.1.1+dfsg-5 [180 kB]
Get: 71 http://deb.debian.org/debian trixie/main arm64 libsdsl-dev arm64 2.1.1+dfsg-5 [428 kB]
Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 73 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Get: 74 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Get: 75 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.12.0+git20250209.89ed161+ds-1 [336 kB]
Get: 76 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 77 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB]
Get: 78 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB]
Get: 79 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5+20250125-2 [96.2 kB]
Get: 80 http://deb.debian.org/debian trixie/main arm64 samtools arm64 1.21-1 [637 kB]
Get: 81 http://deb.debian.org/debian trixie/main arm64 libbtllib-dev arm64 1.4.10+dfsg-1+b1 [185 kB]
Get: 82 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB]
Get: 83 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB]
Get: 84 http://deb.debian.org/debian trixie/main arm64 libllvm19 arm64 1:19.1.7-1+b1 [23.3 MB]
Get: 85 http://deb.debian.org/debian trixie/main arm64 libomp5-19 arm64 1:19.1.7-1+b1 [567 kB]
Get: 86 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB]
Get: 87 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 88 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB]
Get: 89 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.2-1 [1970 kB]
Get: 90 http://deb.debian.org/debian trixie/main arm64 libomp-19-dev arm64 1:19.1.7-1+b1 [1151 kB]
Get: 91 http://deb.debian.org/debian trixie/main arm64 libomp-dev arm64 1:19.0-63 [5768 B]
Fetched 79.6 MB in 1s (109 MB/s)
Preconfiguring packages ...
Selecting previously unselected package tzdata.
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(Reading database ... 19922 files and directories currently installed.)
Preparing to unpack .../00-tzdata_2024b-6_all.deb ...
Unpacking tzdata (2024b-6) ...
Selecting previously unselected package netbase.
Preparing to unpack .../01-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package libproc2-0:arm64.
Preparing to unpack .../02-libproc2-0_2%3a4.0.4-7_arm64.deb ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up libcurl4t64:arm64 (8.12.0+git20250209.89ed161+ds-1) ...
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Setting up libhts3t64:arm64 (1.21+ds-1) ...
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Reading package lists...
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I: Building the package
I: Running cd /build/reproducible-path/nthash-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nthash_2.3.0+dfsg-2_source.changes
dpkg-buildpackage: info: source package nthash
dpkg-buildpackage: info: source version 2.3.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Nilesh Patra <nilesh@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_clean
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make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg'
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debian/rules binary
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cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
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-- Check for working C compiler: /usr/bin/cc - skipped
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-- Detecting CXX compiler ABI info
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-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
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-- Configuring done (0.8s)
-- Generating done (0.0s)
CMake Warning:
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CMAKE_EXPORT_NO_PACKAGE_REGISTRY
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debian/rules override_dh_auto_build
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cd obj-aarch64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1
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make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu'
[100%] Built target nthash_tests
make[3]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu'
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dh_auto_test
cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12
make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j12
UpdateCTestConfiguration from :/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/DartConfiguration.tcl
UpdateCTestConfiguration from :/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/DartConfiguration.tcl
Test project /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
Connected to MAKE jobserver
test 1
Start 1: nthash_tests
1: Test command: /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/nthash_tests
1: Working Directory: /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu
1: Test timeout computed to be: 10000000
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer hash values
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer rolling
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer rolling vs ntbase hash values
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing canonical hashing
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer back rolling
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer peeking
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing skipping Ns
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing base substitution
1: Testing RNA
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing block parsing
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seed hash values
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seeds
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seed back roll
1: Testing rolling spaced seeds vs masked hashing
1: Testing reset function
1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing canonical hashing in spaced seeds
1/1 Test #1: nthash_tests ..................... Passed 0.01 sec
100% tests passed, 0 tests failed out of 1
Total Test time (real) = 0.01 sec
make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu'
create-stamp debian/debhelper-build-stamp
dh_prep
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dh_installchangelogs
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dh_strip_nondeterminism
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make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg'
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make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg'
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: Depends field of package libnthash-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libnthash-dev' in '../libnthash-dev_2.3.0+dfsg-2_arm64.deb'.
dpkg-deb: building package 'nthash' in '../nthash_2.3.0+dfsg-2_arm64.deb'.
dpkg-deb: building package 'nthash-dbgsym' in '../nthash-dbgsym_2.3.0+dfsg-2_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../nthash_2.3.0+dfsg-2_arm64.buildinfo
dpkg-genchanges --build=binary -O../nthash_2.3.0+dfsg-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3116758 and its subdirectories
I: Current time: Thu Feb 13 17:33:07 -12 2025
I: pbuilder-time-stamp: 1739511187
Fri Feb 14 05:33:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Fri Feb 14 05:33:09 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Fri Feb 14 05:34:28 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Fri Feb 14 05:34:29 UTC 2025 I: nthash_2.3.0+dfsg-2_arm64.changes:
Format: 1.8
Date: Sat, 30 Nov 2024 19:23:38 +0530
Source: nthash
Binary: libnthash-dev nthash nthash-dbgsym
Architecture: arm64
Version: 2.3.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
libnthash-dev - Recursive hash function for hashing all possible k-mers in a DNA/
nthash - Methods to evaluate runtime and uniformity tests for hashing meth
Closes: 1087552
Changes:
nthash (2.3.0+dfsg-2) unstable; urgency=medium
.
* Team Upload.
* Fixup Build for arm64 (Closes: #1087552)
* Bump Standards-Version to 4.7.0 (no changes needed)
* Get rid of copy of argparse.hpp
* Drop myself from uploaders field
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Files:
bd9ec7e40ca0f286dbe66333dbb89f76 47320 libdevel optional libnthash-dev_2.3.0+dfsg-2_arm64.deb
0b38534d7365e35a0523f424b56ffb15 550088 debug optional nthash-dbgsym_2.3.0+dfsg-2_arm64.deb
c24af057bedb9e940953d414c2ef7e8c 7152 science optional nthash_2.3.0+dfsg-2_arm64.buildinfo
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Fri Feb 14 05:34:30 UTC 2025 I: diffoscope 288 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_10-57219.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8kbRdkte/nthash_2.3.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8kbRdkte/nthash_2.3.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8kbRdkte/nthash_2.3.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8kbRdkte/b1/nthash_2.3.0+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.8kbRdkte/b2/nthash_2.3.0+dfsg-2_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 222ms
CPU time consumed: 221ms
Fri Feb 14 05:34:31 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists.
Fri Feb 14 05:34:31 UTC 2025 I: nthash from trixie built successfully and reproducibly on arm64.
Fri Feb 14 05:34:32 UTC 2025 I: Submitting .buildinfo files to external archives:
Fri Feb 14 05:34:32 UTC 2025 I: Submitting 8.0K b1/nthash_2.3.0+dfsg-2_arm64.buildinfo.asc
Fri Feb 14 05:34:32 UTC 2025 I: Submitting 8.0K b2/nthash_2.3.0+dfsg-2_arm64.buildinfo.asc
Fri Feb 14 05:34:33 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Feb 14 05:34:33 UTC 2025 I: Done submitting .buildinfo files.
Fri Feb 14 05:34:33 UTC 2025 I: Removing signed nthash_2.3.0+dfsg-2_arm64.buildinfo.asc files:
removed './b1/nthash_2.3.0+dfsg-2_arm64.buildinfo.asc'
removed './b2/nthash_2.3.0+dfsg-2_arm64.buildinfo.asc'