Tue Feb 18 15:39:34 UTC 2025 I: starting to build packmol/trixie/arm64 on jenkins on '2025-02-18 15:39' Tue Feb 18 15:39:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/84465/console.log Tue Feb 18 15:39:34 UTC 2025 I: Downloading source for trixie/packmol=1:20.15.3-1 --2025-02-18 15:39:35-- http://deb.debian.org/debian/pool/main/p/packmol/packmol_20.15.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1927 (1.9K) [text/prs.lines.tag] Saving to: ‘packmol_20.15.3-1.dsc’ 0K . 100% 343M=0s 2025-02-18 15:39:35 (343 MB/s) - ‘packmol_20.15.3-1.dsc’ saved [1927/1927] Tue Feb 18 15:39:35 UTC 2025 I: packmol_20.15.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: packmol Binary: packmol Architecture: any Version: 1:20.15.3-1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: http://m3g.iqm.unicamp.br/packmol/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/debichem-team/packmol Vcs-Git: https://salsa.debian.org/debichem-team/packmol.git Build-Depends: debhelper-compat (= 13), cmake, gfortran Package-List: packmol deb science optional arch=any Checksums-Sha1: 6ae1d2e18dfc5100b1e1f2d214ff388fbd76cbc1 629639 packmol_20.15.3.orig.tar.gz 1c53805b26af10a833e3cff2ff0c9e1f25a070ed 2924 packmol_20.15.3-1.debian.tar.xz Checksums-Sha256: a7e63208251c9e404437e3c58c976afc2e747d545c6c42dcfbf0e3e29c2c3d14 629639 packmol_20.15.3.orig.tar.gz 6141d000abc6c7ff8647710e621091f7f04a3e2c43f36aa0025adc3be86e79dc 2924 packmol_20.15.3-1.debian.tar.xz Files: 1132e32b06b5cc924176c1c0942dd13b 629639 packmol_20.15.3.orig.tar.gz 4db20672888d727892412766611def7e 2924 packmol_20.15.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmetpHMACgkQVz7x5L1a AfqPvw/+MOJhOnzsxvLWpDG/fOfizyL8g0BKCV4pvr+s6sxyp7+SF0RzhtA9qV1e me4I6Vj+5S8+wUHDUXDdKg8CWIrnuZiYfoNgcM/iEVS8Mt9/icmetgPevX938xOy +1aKNtlidJD9d0zDfSk7/Yb5S0iRft0xr5c5tS6cDP4+c00Yd1fOuwfK/Z6kN9Rl I+gp+h/Qj/23hNm3b9FSPhY1jz5RxJXPYnXXF9dakt40d4P/8Rt396f2AZ2EWn07 wHEl/D1ZtuNIz9at4A0wOH18vJhPVjr9CMo1RQ491MtVo/PekPnmxsgNr6NYJu0z eTRhChPEcxFjyu5MIgXebeAJAslY8SjS7Omf5zyCR9yDIu0MfWagahDyWb018IDF gVtqM3MykfLsYdeUv5VRGAzTr5gMfSv7yPiyQeGFoRfyGgYGoFebjSQBbek1DHu7 93P92ipK0HKrGASFG/8V/SaowhJhzlACicuuMQpHPe0spbq1HsYWxiKcnmGI8rdP tDnsI2Ncd0YDX9CcmzeFyl1zdsmlbycx6JqqZFNYCH6/t96Y5kReM8BJtYd34Jki WvtROj59dQOSvnmHckbHj19cV/tWE/n+1DfwUuJTYXr/lbbAbOqLrK8bF81PmbHL WNbAsHps6lORbME9pox9cVB49V3DQuBlAAPFon2lrTJxR3HqL1o= =Ma6S -----END PGP SIGNATURE----- Tue Feb 18 15:39:35 UTC 2025 I: Checking whether the package is not for us Tue Feb 18 15:39:35 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Feb 18 15:39:35 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Feb 18 15:40:10 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 18 03:39:37 -12 2025 I: pbuilder-time-stamp: 1739893177 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [packmol_20.15.3-1.dsc] I: copying [./packmol_20.15.3.orig.tar.gz] I: copying [./packmol_20.15.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./packmol_20.15.3-1.dsc: unsupported subcommand dpkg-source: info: extracting packmol in packmol-20.15.3 dpkg-source: info: unpacking packmol_20.15.3.orig.tar.gz dpkg-source: info: unpacking packmol_20.15.3-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3391953/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8fe8cc1e5fa3419cbd237425cbe1c55f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3391953' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GQbgRhUA/pbuilderrc_2So5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GQbgRhUA/b1 --logfile b1/build.log packmol_20.15.3-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3391953/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, gfortran dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 65 newly installed, 0 to remove and 0 not upgraded. Need to get 48.4 MB of archives. After unpacking 185 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.0+git20250209.89ed161+ds-1 [326 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-16 [418 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-16 [9795 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-16 [13.6 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Fetched 48.4 MB in 0s (201 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-3_arm64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... 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Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/packmol-20.15.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../packmol_20.15.3-1_source.changes dpkg-buildpackage: info: source package packmol dpkg-buildpackage: info: source version 1:20.15.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The Fortran compiler identification is GNU 14.2.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/f95 - skipped -- Configuring done (0.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/packmol-20.15.3 -B/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/depend make[3]: Entering directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/packmol-20.15.3 /build/reproducible-path/packmol-20.15.3 /build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu /build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu /build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu/CMakeFiles/packmol.dir/DependInfo.cmake "--color=" Dependee "/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu/CMakeFiles/packmol.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu/CMakeFiles/packmol.dir/depend.internal". 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-fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/jacobi.f90 -o CMakeFiles/packmol.dir/src/jacobi.f90.o [ 24%] Building Fortran object CMakeFiles/packmol.dir/src/pbc.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/random.f90 -o CMakeFiles/packmol.dir/src/random.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/pbc.f90 -o CMakeFiles/packmol.dir/src/pbc.f90.o /usr/bin/cmake -E cmake_copy_f90_mod sizes.mod CMakeFiles/packmol.dir/sizes.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod swaptypemod.mod CMakeFiles/packmol.dir/swaptypemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod exit_codes.mod CMakeFiles/packmol.dir/exit_codes.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/exit_codes.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/sizes.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/swaptypemod.f90.o.provides.build [ 26%] Building Fortran object CMakeFiles/packmol.dir/src/flashmod.f90.o [ 29%] Building Fortran object CMakeFiles/packmol.dir/src/input.f90.o [ 31%] Building Fortran object CMakeFiles/packmol.dir/src/compute_data.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/flashmod.f90 -o CMakeFiles/packmol.dir/src/flashmod.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/input.f90 -o CMakeFiles/packmol.dir/src/input.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/compute_data.f90 -o CMakeFiles/packmol.dir/src/compute_data.f90.o [ 34%] Building Fortran object CMakeFiles/packmol.dir/src/usegencan.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/usegencan.f90 -o CMakeFiles/packmol.dir/src/usegencan.f90.o /usr/bin/cmake -E cmake_copy_f90_mod ahestetic.mod CMakeFiles/packmol.dir/ahestetic.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod pbc.mod CMakeFiles/packmol.dir/pbc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod input.mod CMakeFiles/packmol.dir/input.mod.stamp GNU [ 36%] Building Fortran object CMakeFiles/packmol.dir/src/comparegrad.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/comparegrad.f90 -o CMakeFiles/packmol.dir/src/comparegrad.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/ahestetic.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod flashsort.mod CMakeFiles/packmol.dir/flashsort.mod.stamp GNU /build/reproducible-path/packmol-20.15.3/src/gencan.f:62:37: 62 | subroutine evalnal(n,x,m,lambda,rho,g,flag) | 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:62:41: 62 | subroutine evalnal(n,x,m,lambda,rho,g,flag) | 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:2571:40: 2571 | +steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:2571:33: 2571 | +steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:2571:12: 2571 | +steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:2570:71: 2570 | +fmin,maxfc,iprint,fcnt,inform,xtrial,d,gamma,sigma1,sigma2,sterel, | 1 Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3805:61: 3805 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3805:54: 3805 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:4:36: 4 | subroutine evalal(n,x,m,lambda,rho,f,flag) | 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:4:40: 4 | subroutine evalal(n,x,m,lambda,rho,f,flag) | 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:2967:19: 2967 | +epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:5165:19: 5165 | +steabs,inform) | 1 Warning: Unused dummy argument 'inform' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:5164:52: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:5164:56: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:5165:12: 5165 | +steabs,inform) | 1 Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:5164:71: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:5164:64: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'xtmp' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-20.15.3/src/gencan.f:125:25: 125 | subroutine evalhd(n) | 1 Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] /usr/bin/cmake -E cmake_copy_f90_mod compute_data.mod CMakeFiles/packmol.dir/compute_data.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/flashmod.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/input.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/pbc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod usegencan.mod CMakeFiles/packmol.dir/usegencan.mod.stamp GNU [ 39%] Building Fortran object CMakeFiles/packmol.dir/src/title.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/title.f90 -o CMakeFiles/packmol.dir/src/title.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/compute_data.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/usegencan.f90.o.provides.build [ 41%] Building Fortran object CMakeFiles/packmol.dir/src/swaptype.f90.o [ 43%] Building Fortran object CMakeFiles/packmol.dir/src/setibox.f90.o [ 46%] Building Fortran object CMakeFiles/packmol.dir/src/computef.f90.o [ 48%] Building Fortran object CMakeFiles/packmol.dir/src/strlength.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/strlength.f90 -o CMakeFiles/packmol.dir/src/strlength.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/setibox.f90 -o CMakeFiles/packmol.dir/src/setibox.f90.o [ 51%] Building Fortran object CMakeFiles/packmol.dir/src/computeg.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/swaptype.f90 -o CMakeFiles/packmol.dir/src/swaptype.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/computef.f90 -o CMakeFiles/packmol.dir/src/computef.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/computeg.f90 -o CMakeFiles/packmol.dir/src/computeg.f90.o [ 56%] Building Fortran object CMakeFiles/packmol.dir/src/initial.f90.o [ 53%] Building Fortran object CMakeFiles/packmol.dir/src/cenmass.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/initial.f90 -o CMakeFiles/packmol.dir/src/initial.f90.o [ 58%] Building Fortran object CMakeFiles/packmol.dir/src/pgencan.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/cenmass.f90 -o CMakeFiles/packmol.dir/src/cenmass.f90.o [ 60%] Building Fortran object CMakeFiles/packmol.dir/src/setsizes.f90.o [ 63%] Building Fortran object CMakeFiles/packmol.dir/src/getinp.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/pgencan.f90 -o CMakeFiles/packmol.dir/src/pgencan.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/setsizes.f90 -o CMakeFiles/packmol.dir/src/setsizes.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/getinp.f90 -o CMakeFiles/packmol.dir/src/getinp.f90.o [ 65%] Building Fortran object CMakeFiles/packmol.dir/src/output.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/output.f90 -o CMakeFiles/packmol.dir/src/output.f90.o [ 68%] Building Fortran object CMakeFiles/packmol.dir/src/checkpoint.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/checkpoint.f90 -o CMakeFiles/packmol.dir/src/checkpoint.f90.o [ 70%] Building Fortran object CMakeFiles/packmol.dir/src/writesuccess.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/writesuccess.f90 -o CMakeFiles/packmol.dir/src/writesuccess.f90.o [ 73%] Building Fortran object CMakeFiles/packmol.dir/src/fparc.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/fparc.f90 -o CMakeFiles/packmol.dir/src/fparc.f90.o [ 75%] Building Fortran object CMakeFiles/packmol.dir/src/gparc.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/gparc.f90 -o CMakeFiles/packmol.dir/src/gparc.f90.o [ 78%] Building Fortran object CMakeFiles/packmol.dir/src/gwalls.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/gwalls.f90 -o CMakeFiles/packmol.dir/src/gwalls.f90.o [ 80%] Building Fortran object CMakeFiles/packmol.dir/src/comprest.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/comprest.f90 -o CMakeFiles/packmol.dir/src/comprest.f90.o [ 82%] Building Fortran object CMakeFiles/packmol.dir/app/packmol.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/app/packmol.f90 -o CMakeFiles/packmol.dir/app/packmol.f90.o [ 85%] Building Fortran object CMakeFiles/packmol.dir/src/polartocart.f90.o [ 87%] Building Fortran object CMakeFiles/packmol.dir/src/resetboxes.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/polartocart.f90 -o CMakeFiles/packmol.dir/src/polartocart.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/resetboxes.f90 -o CMakeFiles/packmol.dir/src/resetboxes.f90.o [ 90%] Building Fortran object CMakeFiles/packmol.dir/src/tobar.f90.o /build/reproducible-path/packmol-20.15.3/src/getinp.f90:1005:15: 1005 | if(ires.ne.ireslast) then | ^ Warning: 'ireslast' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/getinp.f90:990:35: 990 | integer :: iread, ires, ireslast, nres, ioerr | ^ note: 'ireslast' was declared here /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/tobar.f90 -o CMakeFiles/packmol.dir/src/tobar.f90.o [ 92%] Building Fortran object CMakeFiles/packmol.dir/src/setijk.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/setijk.f90 -o CMakeFiles/packmol.dir/src/setijk.f90.o [ 95%] Building Fortran object CMakeFiles/packmol.dir/src/restmol.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/restmol.f90 -o CMakeFiles/packmol.dir/src/restmol.f90.o [ 97%] Building Fortran object CMakeFiles/packmol.dir/src/heuristics.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.15.3/src/heuristics.f90 -o CMakeFiles/packmol.dir/src/heuristics.f90.o /build/reproducible-path/packmol-20.15.3/src/output.f90:573:36: 573 | nres = ilres - ifres + 1 | ^ Warning: 'ilres' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/output.f90:19:46: 19 | irest, iimol, ichain, iatom, irec, ilres, ifres,& | ^ note: 'ilres' was declared here /build/reproducible-path/packmol-20.15.3/app/packmol.f90:347:44: 347 | iratom(icart,iratcount) = iirest | ^ Warning: 'iirest' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/app/packmol.f90:51:42: 51 | integer :: i, iline, iiatom, iat, iirest, iratcount, ival | ^ note: 'iirest' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'alpha' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3221:31: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^ note: 'alpha' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3480:72: 3480 | amax = min( amax1 , amax2 ) | ^ Warning: 'amax1' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3221:42: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^ note: 'amax1' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3481:72: 3481 | amaxn = max( amax1n, amax2n ) | ^ Warning: 'amax1n' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3221:49: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^ note: 'amax1n' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dnorm2' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3222:67: 3222 | + amax2nx,amax2x,bb,bestprog,beta,cc,currprog,dd,dnorm2,dtr, | ^ note: 'dnorm2' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dtr' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3222:71: 3222 | + amax2nx,amax2x,bb,bestprog,beta,cc,currprog,dd,dnorm2,dtr, | ^ note: 'dtr' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dtw' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3223:21: 3223 | + dts,dtw,gnorm2,gts,norm2s,q,qamax,qamaxn,qprev,rnorm2, | ^ note: 'dtw' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3332:72: 3332 | beta = rnorm2 / rnorm2prev | ^ Warning: 'rnorm2prev' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3224:24: 3224 | + rnorm2prev,snorm2,snorm2prev | ^ note: 'rnorm2prev' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3629:72: 3629 | rbdind = rbdposaind | ^ Warning: 'rbdposaind' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3220:56: 3220 | integer i,itnqmp,rbdnegaind,rbdnegatype,rbdposaind,rbdposatype | ^ note: 'rbdposaind' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:3636:14: 3636 | if ( rbdtype .eq. 1 ) then | ^ Warning: 'rbdposatype' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:3220:68: 3220 | integer i,itnqmp,rbdnegaind,rbdnegatype,rbdposaind,rbdposatype | ^ note: 'rbdposatype' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:2128:72: 2128 | delta = max( delmin, 10.0d0 * sqrt( sts ) ) | ^ Warning: 'sts' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:1677:37: 1677 | + kappa,lamspg,ometa2,sts,sty,xnorm | ^ note: 'sts' was declared here /build/reproducible-path/packmol-20.15.3/src/gencan.f:2300:35: 2300 | if ( iter .eq. 1 .or. sty .le. 0.0d0 ) then | ^ Warning: 'sty' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-20.15.3/src/gencan.f:1677:41: 1677 | + kappa,lamspg,ometa2,sts,sty,xnorm | ^ note: 'sty' was declared here [100%] Linking Fortran executable packmol /usr/bin/cmake -E cmake_link_script CMakeFiles/packmol.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/packmol.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard CMakeFiles/packmol.dir/src/exit_codes.f90.o CMakeFiles/packmol.dir/src/cenmass.f90.o CMakeFiles/packmol.dir/src/gencan.f.o CMakeFiles/packmol.dir/src/gencan_ieee_signal_routines.f90.o CMakeFiles/packmol.dir/src/pgencan.f90.o CMakeFiles/packmol.dir/src/initial.f90.o CMakeFiles/packmol.dir/src/title.f90.o CMakeFiles/packmol.dir/src/setsizes.f90.o CMakeFiles/packmol.dir/src/getinp.f90.o CMakeFiles/packmol.dir/src/strlength.f90.o CMakeFiles/packmol.dir/src/output.f90.o CMakeFiles/packmol.dir/src/checkpoint.f90.o CMakeFiles/packmol.dir/src/writesuccess.f90.o CMakeFiles/packmol.dir/src/fparc.f90.o CMakeFiles/packmol.dir/src/gparc.f90.o CMakeFiles/packmol.dir/src/gwalls.f90.o CMakeFiles/packmol.dir/src/comprest.f90.o CMakeFiles/packmol.dir/src/comparegrad.f90.o CMakeFiles/packmol.dir/app/packmol.f90.o CMakeFiles/packmol.dir/src/polartocart.f90.o CMakeFiles/packmol.dir/src/resetboxes.f90.o CMakeFiles/packmol.dir/src/tobar.f90.o CMakeFiles/packmol.dir/src/setijk.f90.o CMakeFiles/packmol.dir/src/setibox.f90.o CMakeFiles/packmol.dir/src/restmol.f90.o CMakeFiles/packmol.dir/src/swaptype.f90.o CMakeFiles/packmol.dir/src/swaptypemod.f90.o CMakeFiles/packmol.dir/src/ahestetic.f90.o CMakeFiles/packmol.dir/src/heuristics.f90.o CMakeFiles/packmol.dir/src/flashsort.f90.o CMakeFiles/packmol.dir/src/jacobi.f90.o CMakeFiles/packmol.dir/src/random.f90.o CMakeFiles/packmol.dir/src/sizes.f90.o CMakeFiles/packmol.dir/src/pbc.f90.o CMakeFiles/packmol.dir/src/usegencan.f90.o CMakeFiles/packmol.dir/src/compute_data.f90.o CMakeFiles/packmol.dir/src/flashmod.f90.o CMakeFiles/packmol.dir/src/computef.f90.o CMakeFiles/packmol.dir/src/computeg.f90.o CMakeFiles/packmol.dir/src/input.f90.o -o packmol make[3]: Leaving directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' [100%] Built target packmol make[2]: Leaving directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/packmol/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/packmol-20.15.3/debian/packmol AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/packmol-20.15.3 -B/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/packmol-20.15.3/debian/packmol/usr/bin/packmol make[1]: Leaving directory '/build/reproducible-path/packmol-20.15.3/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'packmol' in '../packmol_20.15.3-1_arm64.deb'. dpkg-deb: building package 'packmol-dbgsym' in '../packmol-dbgsym_20.15.3-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../packmol_20.15.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../packmol_20.15.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3391953 and its subdirectories I: Current time: Tue Feb 18 03:40:08 -12 2025 I: pbuilder-time-stamp: 1739893208 Tue Feb 18 15:40:10 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Feb 18 15:40:10 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Feb 18 15:41:01 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Feb 18 15:41:02 UTC 2025 I: packmol_20.15.3-1_arm64.changes: Format: 1.8 Date: Thu, 13 Feb 2025 08:43:11 +0100 Source: packmol Binary: packmol packmol-dbgsym Architecture: arm64 Version: 1:20.15.3-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: packmol - Initial configurations for Molecular Dynamics Simulations Changes: packmol (1:20.15.3-1) unstable; urgency=medium . * New upstream release. * Standards-Version: 4.7.0 Checksums-Sha1: d3d65c15b84372d182bd4e130760f259df3d8cf8 132864 packmol-dbgsym_20.15.3-1_arm64.deb 8b4bd90663e113b0466874ca5bfaf8cb29aa2c1d 6060 packmol_20.15.3-1_arm64.buildinfo 9740521c8c9470442a9170888df87c09359e6378 106056 packmol_20.15.3-1_arm64.deb Checksums-Sha256: 3c17d3f8815302e9e94216b04c819ef7b719777ff4aa6eb10074887d4b9f8f6e 132864 packmol-dbgsym_20.15.3-1_arm64.deb d6e10acede94ce7b1c344fe7271ebc4b374e8ec3fb741a6313849068f2b4cb64 6060 packmol_20.15.3-1_arm64.buildinfo 19e1078f8ac0223f6539a5a0b2200621f682b4520fc248347f31820a320f719b 106056 packmol_20.15.3-1_arm64.deb Files: 903d64ba9c063899e5730e3eb226caac 132864 debug optional packmol-dbgsym_20.15.3-1_arm64.deb 761ac846b73e5f86f892d7487c5dab8d 6060 science optional packmol_20.15.3-1_arm64.buildinfo 1303e82c52c7c8a54899f1397a1db620 106056 science optional packmol_20.15.3-1_arm64.deb Tue Feb 18 15:41:03 UTC 2025 I: diffoscope 288 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_11-84465.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GQbgRhUA/packmol_20.15.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GQbgRhUA/packmol_20.15.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GQbgRhUA/packmol_20.15.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GQbgRhUA/b1/packmol_20.15.3-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.GQbgRhUA/b2/packmol_20.15.3-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 224ms CPU time consumed: 225ms Tue Feb 18 15:41:03 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Tue Feb 18 15:41:03 UTC 2025 I: packmol from trixie built successfully and reproducibly on arm64. Tue Feb 18 15:41:04 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Feb 18 15:41:04 UTC 2025 I: Submitting 8.0K b1/packmol_20.15.3-1_arm64.buildinfo.asc Tue Feb 18 15:41:06 UTC 2025 I: Submitting 8.0K b2/packmol_20.15.3-1_arm64.buildinfo.asc Tue Feb 18 15:41:08 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Feb 18 15:41:08 UTC 2025 I: Done submitting .buildinfo files. Tue Feb 18 15:41:08 UTC 2025 I: Removing signed packmol_20.15.3-1_arm64.buildinfo.asc files: removed './b1/packmol_20.15.3-1_arm64.buildinfo.asc' removed './b2/packmol_20.15.3-1_arm64.buildinfo.asc'