Thu Mar 20 18:46:12 UTC 2025 I: starting to build parallel-fastq-dump/trixie/arm64 on jenkins on '2025-03-20 18:45' Thu Mar 20 18:46:12 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/89874/console.log Thu Mar 20 18:46:12 UTC 2025 I: Downloading source for trixie/parallel-fastq-dump=0.6.7-3 --2025-03-20 18:46:12-- http://deb.debian.org/debian/pool/main/p/parallel-fastq-dump/parallel-fastq-dump_0.6.7-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2141 (2.1K) [text/prs.lines.tag] Saving to: ‘parallel-fastq-dump_0.6.7-3.dsc’ 0K .. 100% 357M=0s 2025-03-20 18:46:12 (357 MB/s) - ‘parallel-fastq-dump_0.6.7-3.dsc’ saved [2141/2141] Thu Mar 20 18:46:12 UTC 2025 I: parallel-fastq-dump_0.6.7-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parallel-fastq-dump Binary: parallel-fastq-dump Architecture: any Version: 0.6.7-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvalieris/parallel-fastq-dump Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/parallel-fastq-dump Vcs-Git: https://salsa.debian.org/med-team/parallel-fastq-dump.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit Package-List: parallel-fastq-dump deb science optional arch=any Checksums-Sha1: 2f84683b686881fe817aa7fbd1a0b2358bfe4508 4208 parallel-fastq-dump_0.6.7.orig.tar.gz f3baa817ee82ca672dda9cd5ad5df4e404b90962 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz Checksums-Sha256: cb33ea0ed0b1123c100aee7b9ea60a3fc3fc81a3a46be5237c85ba56380617de 4208 parallel-fastq-dump_0.6.7.orig.tar.gz b9c66d93be3feaf1ae18f9f1b0389c5daa188ff80272b3eb6598f3b6642f3e94 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz Files: 2be46eb5b8865bc837bd279d892b29a9 4208 parallel-fastq-dump_0.6.7.orig.tar.gz e2a2e4479401189dde4e81f8792be58d 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmJDUlASHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxqIQQAIeI2pf5pHv7d8I20+x1zpMtxNiPIgqd /ALBNe7PioXeZC3fLnFEyEuE+/R2DndrboxE+fi1sMyOhS3EX8tNV8o5mQhxng7l KJE4xRlYAq+HYPgJ2ApCHU5UXS14Uzrf0PPbgl3vOzexr+qI2Rr0NmJ/38NtjMsM B5kVQ/KqzvVqxQUZ7Ii28j4ELzl/JSiBOdKwvQs+gxBVblDg7/GHy+sWJSH1L19n UBVNgnEoElfPv8SzpvaqwGH7iACT7pCqNEg7V5nP+f+WQVkEB+ZY63F8bJP0p9f2 Yc84J8gc06jzktPG6ia0niYVgVAa7YdtofKm0SG/QWAxSY1sUgJM3g+NzW3vmLZo 5aH6Meq5GzQ1GD/JpNlx8AM2l1wBCYrpY3YKgFSfQEH1Ia6/HZ2yE6xVjrCg8TTU efyTT1L/XGhmaaaHRdOdhdxb3g1YY5eBAO6qsNwG3umChMipJmGyh2i+MKaUesE2 3e7vz0d96o1CHPXj9O4NOHYCf2Wai8i1yXtQcvSpnUhh/YWPEdeDefLaPcAv6v0z M5OLrO2Ai96KYUK6n+Bn81xUXdDKAWSJsleEiJPl5n1thouFyKVq3CWPpf7nim3A x+jo9kQO20rEQALV7JL8nrJZqzkKXvYL5fZBuJfII0tFwe/tszqcO5Xbz0p0xY7X I7NFFxRKMAB2 =V+so -----END PGP SIGNATURE----- Thu Mar 20 18:46:12 UTC 2025 I: Checking whether the package is not for us Thu Mar 20 18:46:12 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Mar 20 18:46:12 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Mar 20 18:47:54 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 20 06:46:14 -12 2025 I: pbuilder-time-stamp: 1742496374 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parallel-fastq-dump_0.6.7-3.dsc] I: copying [./parallel-fastq-dump_0.6.7.orig.tar.gz] I: copying [./parallel-fastq-dump_0.6.7-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./parallel-fastq-dump_0.6.7-3.dsc: unsupported subcommand dpkg-source: info: extracting parallel-fastq-dump in parallel-fastq-dump-0.6.7 dpkg-source: info: unpacking parallel-fastq-dump_0.6.7.orig.tar.gz dpkg-source: info: unpacking parallel-fastq-dump_0.6.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/332868/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c7f0cee7098444b88f98f1448dedc9c8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='332868' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ztuYNELV/pbuilderrc_qQmh --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ztuYNELV/b1 --logfile b1/build.log parallel-fastq-dump_0.6.7-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/332868/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19899 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhdf5-310{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-vdb3{a} libncbi-wvdb3{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sra-toolkit{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx med-config publicsuffix wget 0 packages upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 42.1 MB of archives. After unpacking 159 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-2 [853 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-2 [1995 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-2 [1888 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-2 [746 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 36 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250308 [115 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 52 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-3 [339 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 68 http://deb.debian.org/debian trixie/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libmbedcrypto16 arm64 3.6.2-3 [341 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libmbedx509-7 arm64 3.6.2-3 [146 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libmbedtls21 arm64 3.6.2-3 [222 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libncbi-vdb3 arm64 3.0.9+dfsg-2 [1110 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libncbi-wvdb3 arm64 3.0.9+dfsg-2 [1113 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 86 http://deb.debian.org/debian trixie/main arm64 sra-toolkit arm64 3.0.9+dfsg-7.1 [6351 kB] Fetched 42.1 MB in 1s (41.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19899 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_arm64.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:arm64 (3.13.2-2) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20233 files and directories currently installed.) 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_arm64.deb ... Unpacking python3.13 (3.13.2-2) ... 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Selecting previously unselected package sra-toolkit. Preparing to unpack .../72-sra-toolkit_3.0.9+dfsg-7.1_arm64.deb ... Unpacking sra-toolkit (3.0.9+dfsg-7.1) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Mar 20 18:47:19 UTC 2025. Universal Time is now: Thu Mar 20 18:47:19 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up ncbi-vdb-data (3.0.9+dfsg-2) ... Setting up netbase (6.5) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libmbedcrypto16:arm64 (3.6.2-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up libldap2:arm64 (2.6.9+dfsg-2) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:arm64 (3.6.2-3) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libmbedtls21:arm64 (3.6.2-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:arm64 (3.13.2-2) ... Setting up libpython3-stdlib:arm64 (3.13.2-2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up python3.13 (3.13.2-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:arm64 (3.0.9+dfsg-2) ... Setting up python3 (3.13.2-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libncbi-wvdb3:arm64 (3.0.9+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up dh-python (6.20250308) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:arm64 (8.12.1-3) ... Setting up python3-typeguard (4.4.2-1) ... Setting up debhelper (13.24.1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up sra-toolkit (3.0.9+dfsg-7.1) ... Setting up python3-setuptools (75.8.0-1) ... Processing triggers for libc-bin (2.41-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/parallel-fastq-dump-0.6.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parallel-fastq-dump_0.6.7-3_source.changes dpkg-buildpackage: info: source package parallel-fastq-dump dpkg-buildpackage: info: source version 0.6.7-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/parallel-fastq-dump-0.6.7/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_scripts creating build/scripts-3.13 copying and adjusting parallel-fastq-dump -> build/scripts-3.13 changing mode of build/scripts-3.13/parallel-fastq-dump from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/parallel-fastq-dump-0.6.7/.pybuild/cpython3_3.13/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/parallel-fastq-dump/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_scripts running install_egg_info running egg_info creating parallel_fastq_dump.egg-info writing parallel_fastq_dump.egg-info/PKG-INFO writing dependency_links to parallel_fastq_dump.egg-info/dependency_links.txt writing top-level names to parallel_fastq_dump.egg-info/top_level.txt writing manifest file 'parallel_fastq_dump.egg-info/SOURCES.txt' reading manifest file 'parallel_fastq_dump.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'parallel_fastq_dump.egg-info/SOURCES.txt' Copying parallel_fastq_dump.egg-info to /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump/usr/lib/python3.13/dist-packages/parallel_fastq_dump-0.6.7.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump/usr/bin copying build/scripts-3.13/parallel-fastq-dump -> /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump/usr/bin changing mode of /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump/usr/bin/parallel-fastq-dump to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'parallel-fastq-dump' in '../parallel-fastq-dump_0.6.7-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../parallel-fastq-dump_0.6.7-3_arm64.buildinfo dpkg-genchanges --build=binary -O../parallel-fastq-dump_0.6.7-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/332868 and its subdirectories I: Current time: Thu Mar 20 06:47:52 -12 2025 I: pbuilder-time-stamp: 1742496472 Thu Mar 20 18:47:54 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Mar 20 18:47:54 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Mar 20 18:48:36 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Mar 20 18:48:37 UTC 2025 I: parallel-fastq-dump_0.6.7-3_arm64.changes: Format: 1.8 Date: Tue, 29 Mar 2022 18:31:28 +0000 Source: parallel-fastq-dump Binary: parallel-fastq-dump Architecture: arm64 Version: 0.6.7-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: parallel-fastq-dump - parallel fastq-dump wrapper Changes: parallel-fastq-dump (0.6.7-3) unstable; urgency=medium . * Team Upload. * add autopkgtest Checksums-Sha1: be8a522529821dc95714081251ea1d8824f22a09 6443 parallel-fastq-dump_0.6.7-3_arm64.buildinfo fe9c430567d5585f8860926b2c92f5beede18f5b 5632 parallel-fastq-dump_0.6.7-3_arm64.deb Checksums-Sha256: 4e99481f6f027e25552e256f73c24d75de5ca574a78126d3dcd8472112d7e071 6443 parallel-fastq-dump_0.6.7-3_arm64.buildinfo aa33b62ac87174d07773bb52b9802e312efdd6332534d228effb95495be15c88 5632 parallel-fastq-dump_0.6.7-3_arm64.deb Files: bb1a2e4d2579e68bbf3ffa88645c5ded 6443 science optional parallel-fastq-dump_0.6.7-3_arm64.buildinfo 9dd28ef4727297b25e5dcbedab395639 5632 science optional parallel-fastq-dump_0.6.7-3_arm64.deb Thu Mar 20 18:48:38 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_11-89874.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ztuYNELV/parallel-fastq-dump_0.6.7-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ztuYNELV/parallel-fastq-dump_0.6.7-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ztuYNELV/parallel-fastq-dump_0.6.7-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ztuYNELV/b1/parallel-fastq-dump_0.6.7-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ztuYNELV/b2/parallel-fastq-dump_0.6.7-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 219ms CPU time consumed: 219ms Thu Mar 20 18:48:39 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Thu Mar 20 18:48:39 UTC 2025 I: parallel-fastq-dump from trixie built successfully and reproducibly on arm64. Thu Mar 20 18:48:40 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Mar 20 18:48:40 UTC 2025 I: Submitting 8.0K b1/parallel-fastq-dump_0.6.7-3_arm64.buildinfo.asc Thu Mar 20 18:48:41 UTC 2025 I: Submitting 8.0K b2/parallel-fastq-dump_0.6.7-3_arm64.buildinfo.asc Thu Mar 20 18:48:42 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Mar 20 18:48:42 UTC 2025 I: Done submitting .buildinfo files. Thu Mar 20 18:48:42 UTC 2025 I: Removing signed parallel-fastq-dump_0.6.7-3_arm64.buildinfo.asc files: removed './b1/parallel-fastq-dump_0.6.7-3_arm64.buildinfo.asc' removed './b2/parallel-fastq-dump_0.6.7-3_arm64.buildinfo.asc'