Wed Mar 19 01:51:29 UTC 2025 I: starting to build pbcopper/trixie/arm64 on jenkins on '2025-03-19 01:51' Wed Mar 19 01:51:29 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/79823/console.log Wed Mar 19 01:51:29 UTC 2025 I: Downloading source for trixie/pbcopper=2.3.0+dfsg-2 --2025-03-19 01:51:29-- http://deb.debian.org/debian/pool/main/p/pbcopper/pbcopper_2.3.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2379 (2.3K) [text/prs.lines.tag] Saving to: ‘pbcopper_2.3.0+dfsg-2.dsc’ 0K .. 100% 357M=0s 2025-03-19 01:51:29 (357 MB/s) - ‘pbcopper_2.3.0+dfsg-2.dsc’ saved [2379/2379] Wed Mar 19 01:51:29 UTC 2025 I: pbcopper_2.3.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbcopper Binary: libpbcopper2.3.0, libpbcopper-dev Architecture: any-amd64 arm64 loong64 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 alpha Version: 2.3.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/pbcopper Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pbcopper Vcs-Git: https://salsa.debian.org/med-team/pbcopper.git Build-Depends: debhelper-compat (= 13), d-shlibs, meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev, libsimde-dev Package-List: libpbcopper-dev deb libdevel optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha libpbcopper2.3.0 deb libs optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha Checksums-Sha1: 7f03fb0c39532e685be6893190fbd1556a45eb0b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz a04cccf7a845e38a7f199658bee72497e2bcf2af 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz Checksums-Sha256: 778862e58f051159b8b35bdae7d3361011a1cbc674423e6a23992b094f76f162 736204 pbcopper_2.3.0+dfsg.orig.tar.xz 249fa94ccac19d58f1261847b2e11aa8c4c167b45ed7283ac8c772d18860dc6e 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz Files: 2dad359fad146c0886f57c921055a49b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz accfafab8a2cb6ccd40e84c7c839a6bd 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWysg4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEl5g//WDoifHNHJ3wccdR/lViZaaEquYyg2xOh IHvFdqrigx6MfvHceb9x+Wue43YOIzkGy7eSGmCnfHrFj5tg1T7mqjeaIfmmlAiw g98gevE+iFJNqaF1PI+26gqMtuWo/M5UuzCQKHy18lBoglT9S0KwOyRd9KSzoBWL kSpvRNc7c9bFNpDUChgw53ki14BEL5PvIV/khC2jHbzlbT/aiQOkcJHP85VgW82U /l2WraG+okZ9IxlSuYtytE0c2tcuqwaInsXWGUftuobHwfqxrmsG8ioJ3qAxE7HM 6pi0SR1Fh3BiV4EBAYL92wlzd+g7Zo/+LW5bZ7HZzLQGseoGnI9UHA+d9msU67n3 e+8o2fW/KnCEDtAnr1QEBDyHsIdswlY0Kbh5mHM1TB9so660l+yZFp6kyt3dJXVJ Z2x7JocExboY58zpabAFEnUNuPLsYetZP8hqxzABu+b+FTzRMaa2ZJc9Lj/r4GT3 ebNrif0ddpEEVJmMmNrzj01A2Nm7yEPnd7BxzRhyS5StiBctj8OUj01IUu9XQxap 90tk1HE0Yu/XE+jyiFDfh197WJaxC1BXe3A8dV0+hX2iSxveUnhuchyCFJnf16NW wpczT07es1cDxve9Dx1QdtBmrpkzHlhiyq/4/32Lx8/auzoVpQI+Q+8xuPUhTj+V N7LmDZAa+9M= =LTdi -----END PGP SIGNATURE----- Wed Mar 19 01:51:29 UTC 2025 I: Checking whether the package is not for us Wed Mar 19 01:51:29 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Wed Mar 19 01:51:29 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Wed Mar 19 01:53:48 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 20 20:14:31 -12 2026 I: pbuilder-time-stamp: 1776759271 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbcopper_2.3.0+dfsg-2.dsc] I: copying [./pbcopper_2.3.0+dfsg.orig.tar.xz] I: copying [./pbcopper_2.3.0+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pbcopper_2.3.0+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting pbcopper in pbcopper-2.3.0+dfsg dpkg-source: info: unpacking pbcopper_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pbcopper_2.3.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde.patch dpkg-source: info: applying static+shared_lib.patch dpkg-source: info: applying skip_test_Parallel_FireAndForget.patch dpkg-source: info: applying gcc-13 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3612234/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5c2a98971c65419fa61930ca7d62219a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3612234' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GvxBdaOz/pbuilderrc_6MgA --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GvxBdaOz/b1 --logfile b1/build.log pbcopper_2.3.0+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3612234/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19899 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 57.9 MB of archives. After unpacking 359 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.6-1 [2268 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 41 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.8-1 [107 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-3 [339 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.6-1 [9912 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 d-shlibs all 0.109 [11.1 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 68 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 googletest all 1.16.0-1 [517 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-4.1+b2 [10.6 MB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 77 http://deb.debian.org/debian trixie/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-3 [467 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 meson all 1.7.0-1 [639 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Fetched 57.9 MB in 0s (168 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19899 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbcopper-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.3.0+dfsg-2_source.changes dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 2.3.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --builddirectory=build dh_auto_clean -O--builddirectory=build dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build dh_auto_configure -O--builddirectory=build cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/pbcopper-2.3.0+dfsg Build dir: /build/reproducible-path/pbcopper-2.3.0+dfsg/build Build type: native build ../meson.build:2: WARNING: Keyword argument "default_options" defined multiple times. WARNING: This will be an error in Meson 2.0. Project name: pbcopper Project version: 2.3.0 C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-17) 14.2.0") C linker for the host machine: cc ld.bfd 2.44 C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-17) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.44 Host machine cpu family: aarch64 Host machine cpu: aarch64 Compiler for C++ supports arguments -Wduplicated-cond: YES Compiler for C++ supports arguments -Wduplicated-branches: YES Compiler for C++ supports arguments -Wlogical-op: YES Compiler for C++ supports arguments -Wrestrict: YES Compiler for C++ supports arguments -Wdouble-promotion: YES Compiler for C++ supports arguments -Wshadow: YES Compiler for C++ supports arguments -Wformat=1: YES Compiler for C supports arguments -Wc++-compat: YES Compiler for C supports arguments -Wno-unused-parameter: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C supports arguments -Wno-sign-compare: YES Compiler for C supports arguments -Wno-unused-but-set-variable: YES Compiler for C supports arguments -march=armv8.2-a: YES Run-time dependency threads found: YES Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency Boost found: YES 1.83.0 (/usr/include) Configuring PbcopperVersion.cpp using configuration Configuring LibraryVersion.h using configuration Program tools/check-formatting found: YES (/build/reproducible-path/pbcopper-2.3.0+dfsg/tools/check-formatting) Run-time dependency GTest found: YES 1.15.0 Configuring PbcopperTestData.h using configuration Build targets in project: 5 pbcopper 2.3.0 User defined options buildtype : plain libdir : lib/aarch64-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build -O--builddirectory=build cd build && LC_ALL=C.UTF-8 ninja -j12 -v [1/182] /usr/bin/meson --internal vcstagger ../src/LibraryGitHash.h.in src/LibraryGitHash.h 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [2/182] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [3/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 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src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o -c ../src/align/FindSeeds.cpp [17/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o -c ../src/align/LocalAlignment.cpp [18/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o -c ../src/align/AffineAlignment.cpp [19/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o -c ../src/align/Seed.cpp [20/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o -c ../src/align/BandedChainAlignment.cpp [21/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o -MF src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o.d -o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o -c ../src/algorithm/KMerIndex.cpp [22/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o -c ../src/align/Seeds.cpp [23/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o -c ../src/align/LinearAlignment.cpp [24/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o -c ../src/align/ChainSeeds.cpp [25/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -c ../src/align/SparseAlignment.cpp [26/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -c ../src/align/cssw/ssw_cpp.cpp [27/182] cc -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -c ../src/align/cssw/ssw.c [28/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -c ../tests/src/algorithm/test_KMerIndex.cpp [29/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -c ../tests/src/algorithm/test_LSHIndex.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/14/cstring:43, from ../include/pbcopper/third-party/robin_hood/robin_hood.h:43, from ../include/pbcopper/container/RHUnordered.h:6, from ../include/pbcopper/container/Unordered.h:6, from ../include/pbcopper/algorithm/KMerIndex.h:6, from ../tests/src/algorithm/test_LSHIndex.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘KeyT PacBio::Algorithm::LSHIndex::hashMemory(const T&, int64_t) const [with T = long unsigned int; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:630:24, inlined from ‘KeyT PacBio::Algorithm::LSHIndex::hashIndex(const Sketch&, int64_t, int64_t) const [with Sketch = std::vector >; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:678:30: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)’ writing 8 or more bytes into a region of size 4 overflows the destination [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [30/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_align_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o -c ../tests/src/align/test_Alignment.cpp [31/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o -c ../src/cli2/Option.cpp [32/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -c ../src/cli2/HelpMetrics.cpp [33/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond 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tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -c ../tests/src/cli2/test_VersionPrinter.cpp [126/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c 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-Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp [151/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -c ../tests/src/parallel/test_FireAndForget.cpp [152/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -c ../tests/src/pbmer/test_Parser.cpp [153/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp ../tests/src/parallel/test_FireAndForgetIndexed.cpp: In member function ‘virtual void Parallel_FireAndForgetIndexed_strings_Test::TestBody()’: ../tests/src/parallel/test_FireAndForgetIndexed.cpp:15:25: warning: unused variable ‘numElements’ [-Wunused-variable] 15 | static const size_t numElements = 10000; | ^~~~~~~~~~~ ../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable] 28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; }; | ^~~~~~ [154/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp [155/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp [156/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp [157/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -c ../tests/src/pbmer/test_DbgNode.cpp [158/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp [159/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp [160/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Base64.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -c ../tests/src/utility/test_Base64.cpp [161/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o -c ../tests/src/utility/test_Intrinsics.cpp [162/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp [163/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -c ../tests/src/utility/test_MinMax.cpp [164/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp [165/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -c ../tests/src/utility/test_FastMod.cpp [166/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp [167/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -c ../tests/src/utility/test_MoveAppend.cpp [168/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp [169/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp [170/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -c ../tests/src/utility/test_Overloaded.cpp [171/182] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o [172/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp [173/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -MF tests/pbcopper_test.p/src_qgram_test_Index.cpp.o.d -o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -c ../tests/src/qgram/test_Index.cpp [174/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp [175/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -c ../tests/src/utility/test_Shuffle.cpp [176/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -MF tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o.d -o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -c ../tests/src/third-party/sparc/test_SparcConsensus.cpp [177/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp [178/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp [179/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -c ../tests/src/utility/test_MoveInsert.cpp [180/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp [181/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp [182/182] c++ -o tests/pbcopper_test tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o tests/pbcopper_test.p/src_container_test_Contains.cpp.o tests/pbcopper_test.p/src_container_test_DNAString.cpp.o tests/pbcopper_test.p/src_container_test_Unordered.cpp.o tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o tests/pbcopper_test.p/src_data_test_Frames.cpp.o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o tests/pbcopper_test.p/src_data_test_Interval.cpp.o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o tests/pbcopper_test.p/src_data_test_Read.cpp.o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o tests/pbcopper_test.p/src_data_test_SNR.cpp.o tests/pbcopper_test.p/src_json_test_JSON.cpp.o tests/pbcopper_test.p/src_library_test_Library.cpp.o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o tests/pbcopper_test.p/src_reports_test_Report.cpp.o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 '-Wl,-rpath,$ORIGIN/../src' -Wl,-rpath-link,/build/reproducible-path/pbcopper-2.3.0+dfsg/build/src -Wl,--start-group src/libpbcopper.so.2.3.0 /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a -Wl,--end-group -pthread debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs 1/2 pbcopper formatting check OK 0.02s 2/2 pbcopper gtest unittests OK 9.96s Ok: 2 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-logs/testlog.txt make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build cd build && DESTDIR=/build/reproducible-path/pbcopper-2.3.0\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [1/9] Generating src/utility/PbcopperGitHash.cpp with a custom command [2/8] Generating src/LibraryGitHash.h with a custom command [2/3] Installing files Installing src/libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu Installing src/libpbcopper.a to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/LibraryInfo.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/PbcopperConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/Heteroduplex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/KMerIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/LSHIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/internal/HeteroduplexUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AffineAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AlignConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/BandedChainAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeedsConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/EdlibAlign.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/FindSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/GlobalLocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LinearAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/PairwiseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/SparseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignBlocks.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw_cpp.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/CLI.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Interface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/MultiToolInterface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Option.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionGroup.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/PositionalArgument.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Result.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Results.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/ResultsHandler.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Tool.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/VersionPrinterCallback.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/BuiltinOptions.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/CommandLineParser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HelpMetrics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HiddenOptionMode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/VersionPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitmaskContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/CapacityPointer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Contains.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/DNAString.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/RHUnordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Unordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/AsciiConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/Cuda.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/Alignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/AlignmentGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Accuracy.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CCSTag.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Cigar.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CigarOperation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Clipping.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameCodec.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameEncoders.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Frames.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/GenomicInterval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Interval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/IntervalTree.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/LocalContextFlags.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MappedRead.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Orientation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Position.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValues.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Read.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadId.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSMovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/SNR.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Strand.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Zmw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ClippingImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/MovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/RSMovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/json/JSON.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/json Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Bundle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Info.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/Logging.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogField.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogLevel.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogMessage.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/ConfusionMatrix.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/FishersExact.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForget.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForgetIndexed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/ThreadCount.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/WorkQueue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Bubble.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Dbg.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DbgNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DnaBit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Kmer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Mers.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Parser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/SparseHaplotype.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaConsensus.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/RangeFinder.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/SparsePoa.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/reports/Report.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/reports Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/Index.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHits.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Hashing-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Index-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/edlib.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/htslib/kfunc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/htslib Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/kxsort/kxsort.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/kxsort Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/kalloc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/ksw2.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/MPMCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/SPSCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/robin_hood/robin_hood.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/robin_hood Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/sparc/sparc.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/sparc Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Alarm.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Base64.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Deleters.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FastMod.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FileUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Intrinsics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MemoryConsumption.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MinMax.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveAppend.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveInsert.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/OStreamRedirect.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Overloaded.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PartitionElements.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PbcopperVersion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Random.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SafeSubtract.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SequenceUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Shuffle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Ssize.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Stopwatch.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/StringUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/TimeReporter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Unused.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/FileUtils-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/Stopwatch-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/third-party/json.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-private/pbcopper.pc to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig Installing symlink pointing to libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libpbcopper2.3.0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.a debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so.2.3.0 debian/libpbcopper2.3.0/usr/lib/aarch64-linux-gnu PKGDEV=libpbcopper-dev PKGSHL=libpbcopper2.3.0 install -d -m 755 debian/libpbcopper-dev/usr mv debian/tmp/usr/include debian/libpbcopper-dev/usr install -d -m 755 debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -a -O--builddirectory=build dh_strip -a -O--builddirectory=build dh_makeshlibs -a -O--builddirectory=build dh_shlibdeps -a -O--builddirectory=build dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'libpbcopper2.3.0-dbgsym' in '../libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_arm64.deb'. dpkg-deb: building package 'libpbcopper2.3.0' in '../libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb'. dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_2.3.0+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pbcopper_2.3.0+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../pbcopper_2.3.0+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3612234 and its subdirectories I: Current time: Mon Apr 20 20:16:47 -12 2026 I: pbuilder-time-stamp: 1776759407 Wed Mar 19 01:53:49 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Wed Mar 19 01:53:49 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Wed Mar 19 01:56:22 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Wed Mar 19 01:56:22 UTC 2025 I: pbcopper_2.3.0+dfsg-2_arm64.changes: Format: 1.8 Date: Thu, 25 Jan 2024 20:05:13 +0100 Source: pbcopper Binary: libpbcopper-dev libpbcopper2.3.0 libpbcopper2.3.0-dbgsym Architecture: arm64 Version: 2.3.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libpbcopper-dev - data structures, algorithms, and utilities for C++ applications - libpbcopper2.3.0 - data structures, algorithms, and utilities for C++ applications Closes: 1060791 Changes: pbcopper (2.3.0+dfsg-2) unstable; urgency=medium . * Build-Depends: s/libboost1.81-dev/libboost-dev/ Closes: #1060791 Checksums-Sha1: f6160b605a40f979ccac5701b37387ddc3a13de7 994348 libpbcopper-dev_2.3.0+dfsg-2_arm64.deb b35138dc9a05095dca7624275d1a47940b770ae6 13226152 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_arm64.deb 62a918233e7ab29c01e85628c39460b3e48d0295 627056 libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb 3fb069b96913de5f90b3c2d90fe2e3b1042878fd 7594 pbcopper_2.3.0+dfsg-2_arm64.buildinfo Checksums-Sha256: 301cdabd5c4432626a9b48422f20a09a5a125254a397b8868f47a5914ae8f52b 994348 libpbcopper-dev_2.3.0+dfsg-2_arm64.deb f3f3a92763b5be08686d94992ab8fcde8c96486a7c546b5c893a6e71db3f962c 13226152 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_arm64.deb 20b25a68e0bc65ea47150c00b347bc46f77383ab9f5653bf3a8b80f0a75bfaad 627056 libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb 54d731bd939c8ab8cc3de5013af1e6b7dcdabf5eb48d6fb6a750fcbd798d8fdc 7594 pbcopper_2.3.0+dfsg-2_arm64.buildinfo Files: 50974a9a3448e33b619814bb5d33a4d5 994348 libdevel optional libpbcopper-dev_2.3.0+dfsg-2_arm64.deb 8431f20974dd60256d2a6176d6a6215d 13226152 debug optional libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_arm64.deb 5855db23873cba35d8335f3c4d29ab20 627056 libs optional libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb 14e8891d21e713dd4fb705cd5cf1f0b7 7594 science optional pbcopper_2.3.0+dfsg-2_arm64.buildinfo Wed Mar 19 01:56:23 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_2-79823.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GvxBdaOz/pbcopper_2.3.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GvxBdaOz/pbcopper_2.3.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GvxBdaOz/pbcopper_2.3.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GvxBdaOz/b1/pbcopper_2.3.0+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.GvxBdaOz/b2/pbcopper_2.3.0+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 241ms CPU time consumed: 237ms Wed Mar 19 01:56:24 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Wed Mar 19 01:56:24 UTC 2025 I: pbcopper from trixie built successfully and reproducibly on arm64. Wed Mar 19 01:56:25 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Mar 19 01:56:25 UTC 2025 I: Submitting 12K b1/pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc Wed Mar 19 01:56:26 UTC 2025 I: Submitting 12K b2/pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc Wed Mar 19 01:56:27 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Mar 19 01:56:27 UTC 2025 I: Done submitting .buildinfo files. Wed Mar 19 01:56:27 UTC 2025 I: Removing signed pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc files: removed './b1/pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc' removed './b2/pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc'