Sun Jan 26 07:36:39 UTC 2025 I: starting to build pizzly/trixie/arm64 on jenkins on '2025-01-26 07:36' Sun Jan 26 07:36:39 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/79623/console.log Sun Jan 26 07:36:39 UTC 2025 I: Downloading source for trixie/pizzly=0.37.3+ds-9 --2025-01-26 07:36:39-- http://deb.debian.org/debian/pool/main/p/pizzly/pizzly_0.37.3%2bds-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2023 (2.0K) [text/prs.lines.tag] Saving to: ‘pizzly_0.37.3+ds-9.dsc’ 0K . 100% 246M=0s 2025-01-26 07:36:39 (246 MB/s) - ‘pizzly_0.37.3+ds-9.dsc’ saved [2023/2023] Sun Jan 26 07:36:39 UTC 2025 I: pizzly_0.37.3+ds-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pizzly Binary: pizzly Architecture: any Version: 0.37.3+ds-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/pmelsted/pizzly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pizzly Vcs-Git: https://salsa.debian.org/med-team/pizzly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev Package-List: pizzly deb science optional arch=any Checksums-Sha1: 3c134c7e66314d7c3fdb99d6f9aaa4347d12e713 262304 pizzly_0.37.3+ds.orig.tar.xz c0a79cea3c490eccfefb82c35a90de28a72a6c25 5308 pizzly_0.37.3+ds-9.debian.tar.xz Checksums-Sha256: 8dd0dfb08a9341d4eeb525679779d3afb641b198c88df646ffc7e72930039678 262304 pizzly_0.37.3+ds.orig.tar.xz 7dbcaf4d228a00de23bcd05ea43b829bb4736a3c87e83a346b766a14d7dd4141 5308 pizzly_0.37.3+ds-9.debian.tar.xz Files: cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz fdcd50bccd08aad5072daaa28b32a9d8 5308 pizzly_0.37.3+ds-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPSO9oRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFvqA/+MbaQm/vE2hajyraE2L0yrACvQubO82da UhNjI1Gd7Fv7vAo+luy+woCIiejZ4jSIf5abfEM1zIBjIqVUgXUH6XYumtWNLc3s feXtrLXDWP1Auv5OTY1VffqBjThfPV55JSMGc02/1/zVZ8jyZLlPWe2gnZGcZMl2 meTc+XTyuo3ekanyrVJCcGN6Vm2ppJ8nWiJFP9NVdnPfD8xK8eNYcbcOg4FKY7Ud 9jRrTxVFwo1JNEP4z2r7iIp52KMpw09DgNYkgagOMs7CPIzBssy1NF3UwLp8Qd7L cz/s6AZz0x1Ia75iitFPsN6WvodAL4/9C1du5rVrzDbSpziVYoDRm9ATy8IeD9B4 zn6bENzwZ+Mdg2eHrFnuwNaVD3tqMbMeaq8hTR32O/xGb9E+rHmD/kwbiOoqP/Kh obSf1Qd40MERzrHlbYqoIspZxDQkEpyGiBqIqXLTVGoeqBnYdw2uWCAPYm5HoEIz 2RyOsREB+bWW/gQPP7WgRtHQogMjJB0Uar5oELlNV9Iwnpi7jv5/lrqx6YC/gm+t k6ZSSLSyKBYTBDtQoDjt9VNLlZH+QC74ie2wtE6R1gDh6HuaZ5LMjS6FyQwR/X4K 7N35RxXXUAlF45AqAM3f8sfk/Xr21jY2LZCxRmC20uDdsV9Qmx29PHKVI6yIPVmu /x3bFXpik7Q= =aRRI -----END PGP SIGNATURE----- Sun Jan 26 07:36:39 UTC 2025 I: Checking whether the package is not for us Sun Jan 26 07:36:39 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sun Jan 26 07:36:39 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sun Jan 26 07:40:41 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 25 19:36:41 -12 2025 I: pbuilder-time-stamp: 1737877001 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pizzly_0.37.3+ds-9.dsc] I: copying [./pizzly_0.37.3+ds.orig.tar.xz] I: copying [./pizzly_0.37.3+ds-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pizzly_0.37.3+ds-9.dsc: unsupported subcommand dpkg-source: info: extracting pizzly in pizzly-0.37.3+ds dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2413574/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6c3609656ac5418b992f4bb37aced15e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2413574' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QWv5ziIN/pbuilderrc_qQ1U --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QWv5ziIN/b1 --logfile b1/build.log pizzly_0.37.3+ds-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2413574/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on kallisto; however: Package kallisto is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 71 newly installed, 0 to remove and 0 not upgraded. Need to get 41.3 MB of archives. After unpacking 166 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 28 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.1-1+b1 [331 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 kallisto arm64 0.48.0+dfsg-4+b2 [256 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 41.3 MB in 1s (69.7 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-4_arm64.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.4-1_arm64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pizzly-0.37.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pizzly_0.37.3+ds-9_source.changes dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_auto_clean rm -f debian/pizzly.1 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (5.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/pizzly-0.37.3+ds -B/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/pizzly-0.37.3+ds/. -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /build/reproducible-path/pizzly-0.37.3+ds/main.cpp In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:6: /build/reproducible-path/pizzly-0.37.3+ds/common.h: In constructor 'ProgramOptions::ProgramOptions()': /build/reproducible-path/pizzly-0.37.3+ds/common.h:18:7: warning: 'ProgramOptions::kmerScore' will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'int ProgramOptions::insertSize' [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'ProgramOptions::insertSize' will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:14:8: warning: 'bool ProgramOptions::ignoreProtein' [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:8: /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In member function 'bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:117:10: warning: unused variable 'fw' [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void writeTranscriptome(Transcriptome&, std::ostream&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:146:17: warning: unused variable 'gene_id' [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:172:19: warning: unused variable 'tr_id' [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:9: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:251:9: warning: unused variable 'matchlen' [-Wunused-variable] 251 | int matchlen = seqan::length(krseq); | ^~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 311 | if (tr_stop > seqan::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:765:11: warning: unused variable 'gap' [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:867:17: warning: unused variable 'split_reads' [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: warning: loop variable 'p' creates a copy from type 'const std::pair > >' [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1112:18: warning: unused variable 'firstJsonRead' [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/main.cpp: In function 'int main(int, const char**)': /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:126:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::unordered_map, seqan::String > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'Strandedness operator~(const Strandedness&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ In file included from /usr/include/seqan/stream.h:119, from /usr/include/seqan/arg_parse.h:46, from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:2: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]', inlined from 'seqan::String seqan::_getNumbersFromString(const std::string&)' at /usr/include/seqan/arg_parse/arg_parse_version_check.h:356:46: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'seqan::String seqan::_getNumbersFromString(const std::string&)': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /usr/include/seqan/gff_io/gff_io_base.h:379:44: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /usr/include/seqan/gff_io/gff_io_base.h:386:42: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:435:15: warning: 'splitStrand' may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:389:22: note: 'splitStrand' was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In function 'bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)': /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:602:25: warning: 'st1' may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:18: note: 'st1' was declared here 554 | Strandedness st1,st2; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:603:25: warning: 'st2' may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:22: note: 'st2' was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/pizzly.dir/link.d CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-9d8JMxuo create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ install -m0755 -d /build/reproducible-path/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -m0755 -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-aarch64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_installdocs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -m0755 -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -p -m0644 debian/.debhelper/generated/pizzly/dh_installchangelogs.dch.trimmed debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman install -m0755 -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian install -m0755 -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl dh_link install -m0755 -d debian/pizzly/usr/bin rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism dh_compress cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/build/reproducible-path/pizzly-0.37.3+ds' dh_fixperms find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/52/ae667cecec9f5af52021b150a2530de6d50cf0.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/52/ae667cecec9f5af52021b150a2530de6d50cf0.debug strip --remove-section=.comment --remove-section=.note debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/52/ae667cecec9f5af52021b150a2530de6d50cf0.debug debian/pizzly/usr/bin/pizzly install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym install -m0755 -d debian/.debhelper/pizzly dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb install -m0755 -d debian/pizzly/DEBIAN dh_gencontrol install -m0755 -d debian/pizzly/DEBIAN echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=52ae667cecec9f5af52021b150a2530de6d50cf0 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums install -m0755 -d debian/pizzly/DEBIAN cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root .. dpkg-deb --root-owner-group --build debian/pizzly .. dpkg-deb: building package 'pizzly-dbgsym' in '../pizzly-dbgsym_0.37.3+ds-9_arm64.deb'. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pizzly_0.37.3+ds-9_arm64.buildinfo dpkg-genchanges --build=binary -O../pizzly_0.37.3+ds-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2413574 and its subdirectories I: Current time: Sat Jan 25 19:40:40 -12 2025 I: pbuilder-time-stamp: 1737877240 Sun Jan 26 07:40:42 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sun Jan 26 07:40:42 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sun Jan 26 07:42:09 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sun Jan 26 07:42:09 UTC 2025 I: pizzly_0.37.3+ds-9_arm64.changes: Format: 1.8 Date: Tue, 06 Dec 2022 20:00:06 +0100 Source: pizzly Binary: pizzly pizzly-dbgsym Architecture: arm64 Version: 0.37.3+ds-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pizzly - Identifies gene fusions in RNA sequencing data Changes: pizzly (0.37.3+ds-9) unstable; urgency=medium . * Team upload. * Really fix watch file Checksums-Sha1: 7dec200af53bdc1c25c95b2332a5c04b9b524eb5 3740824 pizzly-dbgsym_0.37.3+ds-9_arm64.deb 9798726df7d58df0576c17eac98895619e4d359f 6358 pizzly_0.37.3+ds-9_arm64.buildinfo 6639dcf7058eb27aacb0dcc6af3942e89ce75d7b 268308 pizzly_0.37.3+ds-9_arm64.deb Checksums-Sha256: 879477ff8a5eef1b2918aea87e6aad092fb316b95f248c3c63f4cd5316cdabde 3740824 pizzly-dbgsym_0.37.3+ds-9_arm64.deb 91b9bebab1ebe0930880db192ff0ec069e583d15040bfa105df1d83f01a1898c 6358 pizzly_0.37.3+ds-9_arm64.buildinfo 055a1221f691012dbfd2203eea2c1ac53cc18600930af823ace042539a1b4599 268308 pizzly_0.37.3+ds-9_arm64.deb Files: 6e6787ccef3c19f12400a600beed5ced 3740824 debug optional pizzly-dbgsym_0.37.3+ds-9_arm64.deb 8209796fc4b9a6bc8f33573c7df6e2fa 6358 science optional pizzly_0.37.3+ds-9_arm64.buildinfo ce068ec3e30380eeb1d681fd4e2554fe 268308 science optional pizzly_0.37.3+ds-9_arm64.deb Sun Jan 26 07:42:11 UTC 2025 I: diffoscope 286 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_12-79623.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QWv5ziIN/pizzly_0.37.3+ds-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QWv5ziIN/pizzly_0.37.3+ds-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QWv5ziIN/pizzly_0.37.3+ds-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QWv5ziIN/b1/pizzly_0.37.3+ds-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QWv5ziIN/b2/pizzly_0.37.3+ds-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 232ms CPU time consumed: 232ms Sun Jan 26 07:42:11 UTC 2025 I: diffoscope 286 found no differences in the changes files, and a .buildinfo file also exists. Sun Jan 26 07:42:11 UTC 2025 I: pizzly from trixie built successfully and reproducibly on arm64. Sun Jan 26 07:42:13 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Jan 26 07:42:13 UTC 2025 I: Submitting 8.0K b1/pizzly_0.37.3+ds-9_arm64.buildinfo.asc Sun Jan 26 07:42:13 UTC 2025 I: Submitting 8.0K b2/pizzly_0.37.3+ds-9_arm64.buildinfo.asc Sun Jan 26 07:42:14 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 26 07:42:14 UTC 2025 I: Done submitting .buildinfo files. Sun Jan 26 07:42:14 UTC 2025 I: Removing signed pizzly_0.37.3+ds-9_arm64.buildinfo.asc files: removed './b1/pizzly_0.37.3+ds-9_arm64.buildinfo.asc' removed './b2/pizzly_0.37.3+ds-9_arm64.buildinfo.asc'