Fri Feb 7 04:20:06 UTC 2025 I: starting to build prinseq-lite/trixie/arm64 on jenkins on '2025-02-07 04:19'
Fri Feb 7 04:20:06 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/73397/console.log
Fri Feb 7 04:20:06 UTC 2025 I: Downloading source for trixie/prinseq-lite=0.20.4-6
--2025-02-07 04:20:06-- http://deb.debian.org/debian/pool/main/p/prinseq-lite/prinseq-lite_0.20.4-6.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2096 (2.0K) [text/prs.lines.tag]
Saving to: ‘prinseq-lite_0.20.4-6.dsc’
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2025-02-07 04:20:06 (351 MB/s) - ‘prinseq-lite_0.20.4-6.dsc’ saved [2096/2096]
Fri Feb 7 04:20:06 UTC 2025 I: prinseq-lite_0.20.4-6.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: prinseq-lite
Binary: prinseq-lite, prinseq-lite-examples
Architecture: all
Version: 0.20.4-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Étienne Mollier <etienne.mollier@mailoo.org>
Homepage: http://prinseq.sourceforge.net/
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/prinseq-lite
Vcs-Git: https://salsa.debian.org/med-team/prinseq-lite.git
Testsuite: autopkgtest
Testsuite-Triggers: file
Build-Depends: debhelper-compat (= 13)
Package-List:
prinseq-lite deb science optional arch=all
prinseq-lite-examples deb science optional arch=all
Checksums-Sha1:
b8560cdc059e9b4cbb1bab5142de29bde5d33f61 494859 prinseq-lite_0.20.4.orig.tar.gz
2f95a5e9746caf43422ea67b5bec0cd9fd98006d 5356 prinseq-lite_0.20.4-6.debian.tar.xz
Checksums-Sha256:
9b5e0dce3b7f02f09e1cc7e8a2dd77c0b133e5e35529d570ee901f53ebfeb56f 494859 prinseq-lite_0.20.4.orig.tar.gz
5c5c0f8417af5a15a12f2f7de1b6daf0fec41d8d27e17cfcd2aa1950725eecc9 5356 prinseq-lite_0.20.4-6.debian.tar.xz
Files:
3be1a572073ebbbecfeba42a42853ff5 494859 prinseq-lite_0.20.4.orig.tar.gz
ca7dd7d18eb3263eef0be068bff5116f 5356 prinseq-lite_0.20.4-6.debian.tar.xz
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Fri Feb 7 04:20:06 UTC 2025 I: Checking whether the package is not for us
Fri Feb 7 04:20:06 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net.
Fri Feb 7 04:20:06 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net.
Fri Feb 7 04:20:45 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Mar 11 22:43:08 -12 2026
I: pbuilder-time-stamp: 1773312188
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [prinseq-lite_0.20.4-6.dsc]
I: copying [./prinseq-lite_0.20.4.orig.tar.gz]
I: copying [./prinseq-lite_0.20.4-6.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./prinseq-lite_0.20.4-6.dsc: unsupported subcommand
dpkg-source: info: extracting prinseq-lite in prinseq-lite-0.20.4
dpkg-source: info: unpacking prinseq-lite_0.20.4.orig.tar.gz
dpkg-source: info: unpacking prinseq-lite_0.20.4-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling-error-in-manpage.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2154871/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='669916375c104635b676dfaaad0884b6'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2154871'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZSAMGbDr/pbuilderrc_vm1f --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZSAMGbDr/b1 --logfile b1/build.log prinseq-lite_0.20.4-6.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2154871/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.1 MB of archives. After unpacking 80.2 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Fetched 20.1 MB in 0s (116 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:arm64.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ...
Unpacking file (1:5.45-3+b1) ...
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Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ...
Unpacking groff-base (1.23.0-7) ...
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Preparing to unpack .../07-bsdextrautils_2.40.4-2_arm64.deb ...
Unpacking bsdextrautils (2.40.4-2) ...
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Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.8-1) ...
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Unpacking man-db (2.13.0-1) ...
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Preparing to unpack .../10-m4_1.4.19-5_arm64.deb ...
Unpacking m4 (1.4.19-5) ...
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Unpacking autotools-dev (20220109.1) ...
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Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ...
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Unpacking autopoint (0.23.1-1) ...
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Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ...
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Unpacking libarchive-zip-perl (1.68-1) ...
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Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ...
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Setting up libpipeline1:arm64 (1.5.8-1) ...
Setting up libicu72:arm64 (72.1-6) ...
Setting up bsdextrautils (2.40.4-2) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libmagic1t64:arm64 (1:5.45-3+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-1) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.40-6) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/prinseq-lite-0.20.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../prinseq-lite_0.20.4-6_source.changes
dpkg-buildpackage: info: source package prinseq-lite
dpkg-buildpackage: info: source version 0.20.4-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <etienne.mollier@mailoo.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/prinseq-lite-0.20.4'
rm -vf debian/prinseq-lite.pl.1 debian/prinseq-graphs.pl.1 debian/prinseq-graphs-noPCA.pl.1
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/prinseq-lite.substvars debian/prinseq-lite-examples.substvars debian/files
rm -fr -- debian/prinseq-lite/ debian/tmp/ debian/prinseq-lite-examples/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
make[1]: Leaving directory '/build/reproducible-path/prinseq-lite-0.20.4'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
create-stamp debian/debhelper-build-stamp
dh_prep
rm -f -- debian/prinseq-lite.substvars debian/prinseq-lite-examples.substvars
rm -fr -- debian/.debhelper/generated/prinseq-lite/ debian/prinseq-lite/ debian/tmp/ debian/.debhelper/generated/prinseq-lite-examples/ debian/prinseq-lite-examples/
dh_install
install -m0755 -d debian/prinseq-lite/usr/bin
cp --reflink=auto -a ./prinseq-graphs-noPCA.pl ./prinseq-graphs.pl ./prinseq-lite.pl debian/prinseq-lite/usr/bin/
dh_installdocs
install -m0755 -d debian/prinseq-lite/usr/share/doc/prinseq-lite
install -p -m0644 debian/copyright debian/prinseq-lite/usr/share/doc/prinseq-lite/copyright
install -m0755 -d debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples
install -p -m0644 debian/copyright debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/copyright
install -m0755 -d debian/prinseq-lite-examples/usr/share/doc-base/
install -p -m0644 debian/prinseq-lite-examples.doc-base debian/prinseq-lite-examples/usr/share/doc-base/prinseq-lite-examples.prinsec-lite-examples
dh_installchangelogs
install -m0755 -d debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples
install -p -m0644 debian/.debhelper/generated/prinseq-lite-examples/dh_installchangelogs.dch.trimmed debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/changelog.Debian
install -p -m0644 ./ChangeLog debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/changelog
install -m0755 -d debian/prinseq-lite/usr/share/doc/prinseq-lite
install -p -m0644 debian/.debhelper/generated/prinseq-lite/dh_installchangelogs.dch.trimmed debian/prinseq-lite/usr/share/doc/prinseq-lite/changelog.Debian
install -p -m0644 ./ChangeLog debian/prinseq-lite/usr/share/doc/prinseq-lite/changelog
dh_installexamples
install -m0755 -d debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1.fasta debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1.fastq debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1.gd debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1.html debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_cd.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_ce.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_df.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_dl.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_dm.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_gc.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_ld.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_ns.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_or.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_pm.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_pv.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_qd.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_qd2.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_qd3.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_td3.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example1_td5.png debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
cp --reflink=auto -a ./example/example_readme.txt debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples
debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/prinseq-lite-0.20.4'
set -e \
; for PROG in prinseq-lite prinseq-graphs prinseq-graphs-noPCA \
; do pod2man -c "${PROG}" "${PROG}.pl" "debian/${PROG}.pl.1" \
; done
dh_installman --language=C
install -m0755 -d debian/prinseq-lite/usr/share/man/man1/
install -p -m0644 ./debian/prinseq-graphs-noPCA.pl.1 debian/prinseq-lite/usr/share/man/man1/prinseq-graphs-noPCA.pl.1
install -m0755 -d debian/prinseq-lite/usr/share/man/man1/
install -p -m0644 ./debian/prinseq-graphs.pl.1 debian/prinseq-lite/usr/share/man/man1/prinseq-graphs.pl.1
install -m0755 -d debian/prinseq-lite/usr/share/man/man1/
install -p -m0644 ./debian/prinseq-lite.pl.1 debian/prinseq-lite/usr/share/man/man1/prinseq-lite.pl.1
man-recode --to-code UTF-8 --suffix .dh-new debian/prinseq-lite/usr/share/man/man1/prinseq-lite.pl.1
man-recode --to-code UTF-8 --suffix .dh-new debian/prinseq-lite/usr/share/man/man1/prinseq-graphs-noPCA.pl.1
man-recode --to-code UTF-8 --suffix .dh-new debian/prinseq-lite/usr/share/man/man1/prinseq-graphs.pl.1
mv debian/prinseq-lite/usr/share/man/man1/prinseq-graphs-noPCA.pl.1.dh-new debian/prinseq-lite/usr/share/man/man1/prinseq-graphs-noPCA.pl.1
chmod 0644 -- debian/prinseq-lite/usr/share/man/man1/prinseq-graphs-noPCA.pl.1
mv debian/prinseq-lite/usr/share/man/man1/prinseq-lite.pl.1.dh-new debian/prinseq-lite/usr/share/man/man1/prinseq-lite.pl.1
chmod 0644 -- debian/prinseq-lite/usr/share/man/man1/prinseq-lite.pl.1
mv debian/prinseq-lite/usr/share/man/man1/prinseq-graphs.pl.1.dh-new debian/prinseq-lite/usr/share/man/man1/prinseq-graphs.pl.1
chmod 0644 -- debian/prinseq-lite/usr/share/man/man1/prinseq-graphs.pl.1
make[1]: Leaving directory '/build/reproducible-path/prinseq-lite-0.20.4'
dh_lintian
install -m0755 -d debian/prinseq-lite/usr/share/lintian/overrides
install -p -m0644 debian/prinseq-lite.lintian-overrides debian/prinseq-lite/usr/share/lintian/overrides/prinseq-lite
dh_perl
mv debian/prinseq-lite.substvars.new debian/prinseq-lite.substvars
dh_link
install -m0755 -d debian/prinseq-lite/usr/share/man/man1
rm -f debian/prinseq-lite/usr/share/man/man1/prinseq-graphs-noPCA.1.gz
ln -s prinseq-graphs-noPCA.pl.1.gz debian/prinseq-lite/usr/share/man/man1/prinseq-graphs-noPCA.1.gz
install -m0755 -d debian/prinseq-lite/usr/bin
rm -f debian/prinseq-lite/usr/bin/prinseq-graphs-noPCA
ln -s prinseq-graphs-noPCA.pl debian/prinseq-lite/usr/bin/prinseq-graphs-noPCA
install -m0755 -d debian/prinseq-lite/usr/share/man/man1
rm -f debian/prinseq-lite/usr/share/man/man1/prinseq-graphs.1.gz
ln -s prinseq-graphs.pl.1.gz debian/prinseq-lite/usr/share/man/man1/prinseq-graphs.1.gz
install -m0755 -d debian/prinseq-lite/usr/bin
rm -f debian/prinseq-lite/usr/bin/prinseq-graphs
ln -s prinseq-graphs.pl debian/prinseq-lite/usr/bin/prinseq-graphs
install -m0755 -d debian/prinseq-lite/usr/share/man/man1
rm -f debian/prinseq-lite/usr/share/man/man1/prinseq-lite.1.gz
ln -s prinseq-lite.pl.1.gz debian/prinseq-lite/usr/share/man/man1/prinseq-lite.1.gz
install -m0755 -d debian/prinseq-lite/usr/bin
rm -f debian/prinseq-lite/usr/bin/prinseq-lite
ln -s prinseq-lite.pl debian/prinseq-lite/usr/bin/prinseq-lite
dh_strip_nondeterminism
Using 1604948269 as canonical time
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_qd3.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_qd2.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_td5.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_td3.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_ns.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_ld.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_gc.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_dm.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_dl.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_df.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_qd.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_pv.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_pm.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_or.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_ce.png using File::StripNondeterminism::handlers::png
Normalizing debian/prinseq-lite-examples/usr/share/doc/prinseq-lite-examples/examples/example1_cd.png using File::StripNondeterminism::handlers::png
dh_compress
cd debian/prinseq-lite
cd debian/prinseq-lite-examples
chmod a-x usr/share/doc/prinseq-lite/changelog usr/share/doc/prinseq-lite/changelog.Debian usr/share/man/man1/prinseq-graphs-noPCA.pl.1 usr/share/man/man1/prinseq-graphs.pl.1 usr/share/man/man1/prinseq-lite.pl.1
chmod a-x usr/share/doc/prinseq-lite-examples/changelog usr/share/doc/prinseq-lite-examples/changelog.Debian
gzip -9nf usr/share/doc/prinseq-lite/changelog usr/share/doc/prinseq-lite/changelog.Debian usr/share/man/man1/prinseq-graphs-noPCA.pl.1 usr/share/man/man1/prinseq-graphs.pl.1 usr/share/man/man1/prinseq-lite.pl.1
gzip -9nf usr/share/doc/prinseq-lite-examples/changelog usr/share/doc/prinseq-lite-examples/changelog.Debian
cd '/build/reproducible-path/prinseq-lite-0.20.4'
cd '/build/reproducible-path/prinseq-lite-0.20.4'
dh_fixperms
find debian/prinseq-lite-examples ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/prinseq-lite ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/prinseq-lite-examples/usr/share/doc -type f -a -true -a ! -regex 'debian/prinseq-lite-examples/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/prinseq-lite/usr/share/doc -type f -a -true -a ! -regex 'debian/prinseq-lite/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/prinseq-lite-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/prinseq-lite/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/prinseq-lite-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/prinseq-lite/usr/share/man debian/prinseq-lite/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/prinseq-lite -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/prinseq-lite/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing
dh_installdeb
install -m0755 -d debian/prinseq-lite/DEBIAN
install -m0755 -d debian/prinseq-lite-examples/DEBIAN
dh_gencontrol
install -m0755 -d debian/prinseq-lite/DEBIAN
echo misc:Depends= >> debian/prinseq-lite.substvars
echo misc:Pre-Depends= >> debian/prinseq-lite.substvars
dpkg-gencontrol -pprinseq-lite -ldebian/changelog -Tdebian/prinseq-lite.substvars -cdebian/control -Pdebian/prinseq-lite
install -m0755 -d debian/prinseq-lite-examples/DEBIAN
echo misc:Depends= >> debian/prinseq-lite-examples.substvars
echo misc:Pre-Depends= >> debian/prinseq-lite-examples.substvars
dpkg-gencontrol -pprinseq-lite-examples -ldebian/changelog -Tdebian/prinseq-lite-examples.substvars -cdebian/control -Pdebian/prinseq-lite-examples
dpkg-gencontrol: warning: Depends field of package prinseq-lite-examples: substitution variable ${shlibs:Depends} used, but is not defined
chmod 0644 -- debian/prinseq-lite-examples/DEBIAN/control
dpkg-gencontrol: warning: Depends field of package prinseq-lite: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package prinseq-lite: substitution variable ${perl:Depends} unused, but is defined
chmod 0644 -- debian/prinseq-lite/DEBIAN/control
dh_md5sums
install -m0755 -d debian/prinseq-lite-examples/DEBIAN
install -m0755 -d debian/prinseq-lite/DEBIAN
cd debian/prinseq-lite-examples >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/prinseq-lite >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/prinseq-lite/DEBIAN/md5sums
chmod 0644 -- debian/prinseq-lite-examples/DEBIAN/md5sums
dh_builddeb
dpkg-deb --root-owner-group --build debian/prinseq-lite ..
dpkg-deb --root-owner-group --build debian/prinseq-lite-examples ..
dpkg-deb: building package 'prinseq-lite-examples' in '../prinseq-lite-examples_0.20.4-6_all.deb'.
dpkg-deb: building package 'prinseq-lite' in '../prinseq-lite_0.20.4-6_all.deb'.
dpkg-genbuildinfo --build=binary -O../prinseq-lite_0.20.4-6_arm64.buildinfo
dpkg-genchanges --build=binary -O../prinseq-lite_0.20.4-6_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2154871 and its subdirectories
I: Current time: Wed Mar 11 22:43:43 -12 2026
I: pbuilder-time-stamp: 1773312223
Fri Feb 7 04:20:46 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net.
Fri Feb 7 04:20:46 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net.
Fri Feb 7 04:21:21 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
Fri Feb 7 04:21:22 UTC 2025 I: prinseq-lite_0.20.4-6_arm64.changes:
Format: 1.8
Date: Mon, 09 Nov 2020 19:57:49 +0100
Source: prinseq-lite
Binary: prinseq-lite prinseq-lite-examples
Architecture: all
Version: 0.20.4-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <etienne.mollier@mailoo.org>
Description:
prinseq-lite - PReprocessing and INformation of SEQuence data (lite version)
prinseq-lite-examples - PReprocessing and INformation of SEQuence data (example data)
Changes:
prinseq-lite (0.20.4-6) unstable; urgency=medium
.
* Fix typo in prinseq-lite-examples description.
* Mark prinseq-lite-examples as Multi-Arch: foreign.
* Update uploader's first name to use uppercase e acute.
* Autopkgtest maintenance:
- remove manpages related tests, as these are failing because
man-db/auto-update is disabled inside autopkgtest environment; usually,
manual related issues are spotted by lintian, so these tests were
redundant anyway;
- improved output file checking a little bit.
Checksums-Sha1:
dafd34e3222e4b422cf923c3ea53dfb2dc564c19 360884 prinseq-lite-examples_0.20.4-6_all.deb
dc15bacb9dc4a4f2b8db5da33a18465e3e5578bb 69564 prinseq-lite_0.20.4-6_all.deb
6cae58e360a5dda68b4656b10e775ec2abb3744f 5037 prinseq-lite_0.20.4-6_arm64.buildinfo
Checksums-Sha256:
9f089b19c97b6e347560b549792cb90c806989ed3ca2783360b6642130e7a885 360884 prinseq-lite-examples_0.20.4-6_all.deb
012f205c2230dc01d1f8670e956ec902d8d7328bfcd1302b15c939fcdc44bc8b 69564 prinseq-lite_0.20.4-6_all.deb
2be6e264da70eb1c95eef6489a0e975376b0c676721cb4dbd5bdb6a29f40a4db 5037 prinseq-lite_0.20.4-6_arm64.buildinfo
Files:
7745464af3c164256b43571890d537cc 360884 science optional prinseq-lite-examples_0.20.4-6_all.deb
5ce81b9730588e7710242288fec9d008 69564 science optional prinseq-lite_0.20.4-6_all.deb
a7749ef972f0176fa917ed0cc03bc61a 5037 science optional prinseq-lite_0.20.4-6_arm64.buildinfo
Fri Feb 7 04:21:23 UTC 2025 I: diffoscope 287 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_2-73397.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZSAMGbDr/prinseq-lite_0.20.4-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZSAMGbDr/prinseq-lite_0.20.4-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZSAMGbDr/prinseq-lite_0.20.4-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZSAMGbDr/b1/prinseq-lite_0.20.4-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZSAMGbDr/b2/prinseq-lite_0.20.4-6_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 220ms
CPU time consumed: 220ms
Fri Feb 7 04:21:23 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists.
Fri Feb 7 04:21:23 UTC 2025 I: prinseq-lite from trixie built successfully and reproducibly on arm64.
Fri Feb 7 04:21:24 UTC 2025 I: Submitting .buildinfo files to external archives:
Fri Feb 7 04:21:24 UTC 2025 I: Submitting 8.0K b1/prinseq-lite_0.20.4-6_arm64.buildinfo.asc
Fri Feb 7 04:21:25 UTC 2025 I: Submitting 8.0K b2/prinseq-lite_0.20.4-6_arm64.buildinfo.asc
Fri Feb 7 04:21:26 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Feb 7 04:21:26 UTC 2025 I: Done submitting .buildinfo files.
Fri Feb 7 04:21:26 UTC 2025 I: Removing signed prinseq-lite_0.20.4-6_arm64.buildinfo.asc files:
removed './b1/prinseq-lite_0.20.4-6_arm64.buildinfo.asc'
removed './b2/prinseq-lite_0.20.4-6_arm64.buildinfo.asc'