Thu Mar 13 20:34:19 UTC 2025 I: starting to build racon/trixie/arm64 on jenkins on '2025-03-13 20:34' Thu Mar 13 20:34:19 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/88771/console.log Thu Mar 13 20:34:19 UTC 2025 I: Downloading source for trixie/racon=1.5.0-3 --2025-03-13 20:34:19-- http://deb.debian.org/debian/pool/main/r/racon/racon_1.5.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2106 (2.1K) [text/prs.lines.tag] Saving to: ‘racon_1.5.0-3.dsc’ 0K .. 100% 281M=0s 2025-03-13 20:34:19 (281 MB/s) - ‘racon_1.5.0-3.dsc’ saved [2106/2106] Thu Mar 13 20:34:19 UTC 2025 I: racon_1.5.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: racon Binary: racon Architecture: any Version: 1.5.0-3 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://github.com/lbcb-sci/racon Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/racon Vcs-Git: https://salsa.debian.org/med-team/racon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler Package-List: racon deb science optional arch=any Checksums-Sha1: c508bea6f7b627e1796f2017669a8e99ed548ddd 3084154 racon_1.5.0.orig.tar.gz 5d5d6ba7f343bf6ee3124a052eb1858b9431dbf1 20652 racon_1.5.0-3.debian.tar.xz Checksums-Sha256: 58fdbbd88f0990b18e3139280aa4fa81e138a9cf0761edd66c43982af784d395 3084154 racon_1.5.0.orig.tar.gz 87ebd723dfb828888b59a5ed30143aa24ec3798c933f41e00196dacc3874d911 20652 racon_1.5.0-3.debian.tar.xz Files: de1982c33464fc7cec8a172931a6cf00 3084154 racon_1.5.0.orig.tar.gz face5096f46b2ce6c9c836bb01cf1603 20652 racon_1.5.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1k2ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHvaQ/+N79w1AElJT5zodwml2cN53AhsH46O5QP JzGAY+aYLx/AZ9C6VIbd6eiTsZ+qNDSWLqqd/ABykcNbZEA+dBiRpX08U4/5OCNi zhXwtP+rO9w0znNpX6S8jUHMnC9yFlwW4t/1GmNAZ42byGm1vA5/6IXTkg2icHL0 8SSvibSqiZgNhiitaMPnKs1fSQA2ymTONHczdKuSRjTzpVkADmdpQch3j0TwZmF5 /hcYo4651y2NbVVJRbTEwPNoDXUE3TaXo0UZVojz5sOYHDQBGcbrai64O7ycB7Pd w+y3JfPaHzfRm23vsnO6PbpG+GFOflG54PIlNHa0Z90QHGZSlZym2gjvU36M2fa9 t3ZMnBLcUBkvTPWJeis9H3mv1/gmFtomkxf0cMz928nSwO8P1MvhoyrCu66q7PzO sOI8KxZ4tdbz+JvwHaa/FBrwl+n1krpXMD8PwoGxsLrY0a/gErVXooD3YoeTzv6d U/xsrofS7jo8CIaWTT2aMoK5JN5YRbk12zH2hWnJw/7XOKBcnTbIhQjRpf4AwfjS X8IJf9txoPJEn1atb/Af7F4FqOmMoAwlDsJPrftzo9bPpfaUocqekHZZJsMro9Xi fbm+SfYqW1SkeLNSR2twNJG1r+eZm6dNsipnerAsTGM7ejcAoyu0LjtZnpoGgS/5 41EO1XUq4VQ= =933u -----END PGP SIGNATURE----- Thu Mar 13 20:34:19 UTC 2025 I: Checking whether the package is not for us Thu Mar 13 20:34:19 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Mar 13 20:34:19 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Mar 13 20:36:35 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 13 08:34:22 -12 2025 I: pbuilder-time-stamp: 1741898062 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/230454/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='baa517ba93b74a0aa84665100947678c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='230454' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oK3qdURV/pbuilderrc_MgVe --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oK3qdURV/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/230454/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19916 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.8-1 [107 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-3 [339 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.6-1 [9912 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libedlib1 arm64 1.2.7-6+b3 [17.4 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libedlib-dev arm64 1.2.7-6+b3 [22.7 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libspoa7.0.0 arm64 4.1.4-2+b1 [53.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libspoa-dev arm64 4.1.4-2+b1 [9788 B] Get: 72 http://deb.debian.org/debian trixie/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 73 http://deb.debian.org/debian trixie/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] Fetched 40.1 MB in 0s (91.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19916 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp [ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu 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'/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (13 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (15 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (16 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (15 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (15 ms) [----------] 5 tests from RaconInitializeTest (77 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.006957 s [racon::Polisher::initialize] loaded sequences 0.051797 s [racon::Polisher::initialize] loaded overlaps 0.000287 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.115746 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.143749 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.163741 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.179740 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.195745 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.211760 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.251751 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.275749 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.291750 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.307747 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.323749 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.347743 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.363737 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.371741 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.387742 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.411737 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.419749 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.435750 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.459749 s [racon::Polisher::initialize] aligning overlaps [====================] 0.475747 s [racon::Polisher::initialize] transformed data into windows 0.001466 s [racon::Polisher::polish] generating consensus [=> ] 0.054390 s [racon::Polisher::polish] generating consensus [==> ] 0.102384 s [racon::Polisher::polish] generating consensus [===> ] 0.142381 s [racon::Polisher::polish] generating consensus [====> ] 0.166400 s [racon::Polisher::polish] generating consensus [=====> ] 0.190375 s [racon::Polisher::polish] generating consensus [======> ] 0.214562 s [racon::Polisher::polish] generating consensus [=======> ] 0.246561 s [racon::Polisher::polish] generating consensus [========> ] 0.258591 s [racon::Polisher::polish] generating consensus [=========> ] 0.290563 s [racon::Polisher::polish] generating consensus [==========> ] 0.322561 s [racon::Polisher::polish] generating consensus [===========> ] 0.382537 s [racon::Polisher::polish] generating consensus [============> ] 0.462565 s [racon::Polisher::polish] generating consensus [=============> ] 0.562566 s [racon::Polisher::polish] generating consensus [==============> ] 0.658287 s [racon::Polisher::polish] generating consensus [===============> ] 0.734549 s [racon::Polisher::polish] generating consensus [================> ] 0.770589 s [racon::Polisher::polish] generating consensus [=================> ] 0.806285 s [racon::Polisher::polish] generating consensus [==================> ] 0.843469 s [racon::Polisher::polish] generating consensus [===================>] 0.843805 s [racon::Polisher::polish] generating consensus [====================] 0.914909 s [racon::Polisher::] total = 1.461723 s [ OK ] RaconPolishingTest.ConsensusWithQualities (1468 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000582 s [racon::Polisher::initialize] loaded sequences 0.011412 s [racon::Polisher::initialize] loaded overlaps 0.000342 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.054347 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.078395 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.102402 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.126398 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.142413 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.150405 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.178405 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.222405 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.222727 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.238411 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.254408 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.286401 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.294396 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.318402 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.334403 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.370408 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.378406 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.394395 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.418404 s [racon::Polisher::initialize] aligning overlaps [====================] 0.426727 s [racon::Polisher::initialize] transformed data into windows 0.000350 s [racon::Polisher::polish] generating consensus [=> ] 0.078990 s [racon::Polisher::polish] generating consensus [==> ] 0.143015 s [racon::Polisher::polish] generating consensus [===> ] 0.191093 s [racon::Polisher::polish] generating consensus [====> ] 0.227002 s [racon::Polisher::polish] generating consensus [=====> ] 0.254995 s [racon::Polisher::polish] generating consensus [======> ] 0.282983 s [racon::Polisher::polish] generating consensus [=======> ] 0.310985 s [racon::Polisher::polish] generating consensus [========> ] 0.342916 s [racon::Polisher::polish] generating consensus [=========> ] 0.387178 s [racon::Polisher::polish] generating consensus [==========> ] 0.451193 s [racon::Polisher::polish] generating consensus [===========> ] 0.523163 s [racon::Polisher::polish] generating consensus [============> ] 0.611170 s [racon::Polisher::polish] generating consensus [=============> ] 0.747188 s [racon::Polisher::polish] generating consensus [==============> ] 0.831159 s [racon::Polisher::polish] generating consensus [===============> ] 0.927171 s [racon::Polisher::polish] generating consensus [================> ] 1.007168 s [racon::Polisher::polish] generating consensus [=================> ] 1.007493 s [racon::Polisher::polish] generating consensus [==================> ] 1.019176 s [racon::Polisher::polish] generating consensus [===================>] 1.031164 s [racon::Polisher::polish] generating consensus [====================] 1.087429 s [racon::Polisher::] total = 1.536371 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1541 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000589 s [racon::Polisher::initialize] loaded sequences 0.026532 s [racon::Polisher::initialize] loaded overlaps 0.015895 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.009517 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.009865 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.010192 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.010518 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.010786 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.011316 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.011831 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.012077 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.012337 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.012588 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.012851 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.013099 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.013364 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.013614 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.013853 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.014090 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.014324 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.014562 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.014807 s [racon::Polisher::initialize] aligning overlaps [====================] 0.015046 s [racon::Polisher::initialize] transformed data into windows 0.001515 s [racon::Polisher::polish] generating consensus [=> ] 0.060474 s [racon::Polisher::polish] generating consensus [==> ] 0.108394 s [racon::Polisher::polish] generating consensus [===> ] 0.148385 s [racon::Polisher::polish] generating consensus [====> ] 0.184417 s [racon::Polisher::polish] generating consensus [=====> ] 0.200392 s [racon::Polisher::polish] generating consensus [======> ] 0.216395 s [racon::Polisher::polish] generating consensus [=======> ] 0.240396 s [racon::Polisher::polish] generating consensus [========> ] 0.264421 s [racon::Polisher::polish] generating consensus [=========> ] 0.292383 s [racon::Polisher::polish] generating consensus [==========> ] 0.332390 s [racon::Polisher::polish] generating consensus [===========> ] 0.360504 s [racon::Polisher::polish] generating consensus [============> ] 0.396388 s [racon::Polisher::polish] generating consensus [=============> ] 0.444392 s [racon::Polisher::polish] generating consensus [==============> ] 0.493479 s [racon::Polisher::polish] generating consensus [===============> ] 0.541031 s [racon::Polisher::polish] generating consensus [================> ] 0.569328 s [racon::Polisher::polish] generating consensus [=================> ] 0.588661 s [racon::Polisher::polish] generating consensus [==================> ] 0.589004 s [racon::Polisher::polish] generating consensus [===================>] 0.608673 s [racon::Polisher::polish] generating consensus [====================] 0.658060 s [racon::Polisher::] total = 0.728358 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (734 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000435 s [racon::Polisher::initialize] loaded sequences 0.011726 s [racon::Polisher::initialize] loaded overlaps 0.015475 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.005376 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005491 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005619 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005724 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.005829 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.005929 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006048 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.006164 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.006288 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.006402 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.006586 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006700 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.006816 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.006931 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007044 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.007161 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.007434 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.007675 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.007918 s [racon::Polisher::initialize] aligning overlaps [====================] 0.008158 s [racon::Polisher::initialize] transformed data into windows 0.000455 s [racon::Polisher::polish] generating consensus [=> ] 0.060515 s [racon::Polisher::polish] generating consensus [==> ] 0.116517 s [racon::Polisher::polish] generating consensus [===> ] 0.160227 s [racon::Polisher::polish] generating consensus [====> ] 0.204253 s [racon::Polisher::polish] generating consensus [=====> ] 0.236268 s [racon::Polisher::polish] generating consensus [======> ] 0.256226 s [racon::Polisher::polish] generating consensus [=======> ] 0.276223 s [racon::Polisher::polish] generating consensus [========> ] 0.296260 s [racon::Polisher::polish] generating consensus [=========> ] 0.312228 s [racon::Polisher::polish] generating consensus [==========> ] 0.344304 s [racon::Polisher::polish] generating consensus [===========> ] 0.376234 s [racon::Polisher::polish] generating consensus [============> ] 0.416241 s [racon::Polisher::polish] generating consensus [=============> ] 0.476227 s [racon::Polisher::polish] generating consensus [==============> ] 0.520230 s [racon::Polisher::polish] generating consensus [===============> ] 0.568227 s [racon::Polisher::polish] generating consensus [================> ] 0.608267 s [racon::Polisher::polish] generating consensus [=================> ] 0.648224 s [racon::Polisher::polish] generating consensus [==================> ] 0.672227 s [racon::Polisher::polish] generating consensus [===================>] 0.704219 s [racon::Polisher::polish] generating consensus [====================] 0.799353 s [racon::Polisher::] total = 0.843222 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (844 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000593 s [racon::Polisher::initialize] loaded sequences 0.026462 s [racon::Polisher::initialize] loaded overlaps 0.000263 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.033257 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.051112 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.061675 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.069646 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.077648 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.085949 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.106421 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.116381 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.124529 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.132063 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.141960 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.150601 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.159839 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.164789 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.170918 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.177474 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.182455 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.189886 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.201478 s [racon::Polisher::initialize] aligning overlaps [====================] 0.209974 s [racon::Polisher::initialize] transformed data into windows 0.001402 s [racon::Polisher::polish] generating consensus [=> ] 0.096044 s [racon::Polisher::polish] generating consensus [==> ] 0.096807 s [racon::Polisher::polish] generating consensus [===> ] 0.179435 s [racon::Polisher::polish] generating consensus [====> ] 0.180100 s [racon::Polisher::polish] generating consensus [=====> ] 0.221153 s [racon::Polisher::polish] generating consensus [======> ] 0.221935 s [racon::Polisher::polish] generating consensus [=======> ] 0.256103 s [racon::Polisher::polish] generating consensus [========> ] 0.256962 s [racon::Polisher::polish] generating consensus [=========> ] 0.315322 s [racon::Polisher::polish] generating consensus [==========> ] 0.316129 s [racon::Polisher::polish] generating consensus [===========> ] 0.424574 s [racon::Polisher::polish] generating consensus [============> ] 0.433120 s [racon::Polisher::polish] generating consensus [=============> ] 0.614189 s [racon::Polisher::polish] generating consensus [==============> ] 0.614212 s [racon::Polisher::polish] generating consensus [===============> ] 0.734194 s [racon::Polisher::polish] generating consensus [================> ] 0.734242 s [racon::Polisher::polish] generating consensus [=================> ] 0.838190 s [racon::Polisher::polish] generating consensus [==================> ] 0.838212 s [racon::Polisher::polish] generating consensus [===================>] 0.926195 s [racon::Polisher::polish] generating consensus [====================] 1.113346 s [racon::Polisher::] total = 1.362445 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1371 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000527 s [racon::Polisher::initialize] loaded sequences 0.026325 s [racon::Polisher::initialize] loaded overlaps 0.000221 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.042434 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.063066 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078609 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.097268 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.103829 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.109841 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.122553 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.145294 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.149393 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.157712 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.164360 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.179629 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.183998 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.194169 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.204153 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.211129 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.211943 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.222175 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.225334 s [racon::Polisher::initialize] aligning overlaps [====================] 0.232680 s [racon::Polisher::initialize] transformed data into windows 0.004176 s [racon::Polisher::polish] generating consensus [=> ] 0.024363 s [racon::Polisher::polish] generating consensus [==> ] 0.046516 s [racon::Polisher::polish] generating consensus [===> ] 0.065159 s [racon::Polisher::polish] generating consensus [====> ] 0.090389 s [racon::Polisher::polish] generating consensus [=====> ] 0.098190 s [racon::Polisher::polish] generating consensus [======> ] 0.106713 s [racon::Polisher::polish] generating consensus [=======> ] 0.115373 s [racon::Polisher::polish] generating consensus [========> ] 0.128933 s [racon::Polisher::polish] generating consensus [=========> ] 0.144634 s [racon::Polisher::polish] generating consensus [==========> ] 0.164199 s [racon::Polisher::polish] generating consensus [===========> ] 0.191595 s [racon::Polisher::polish] generating consensus [============> ] 0.215586 s [racon::Polisher::polish] generating consensus [=============> ] 0.255588 s [racon::Polisher::polish] generating consensus [==============> ] 0.295603 s [racon::Polisher::polish] generating consensus [===============> ] 0.331596 s [racon::Polisher::polish] generating consensus [================> ] 0.355623 s [racon::Polisher::polish] generating consensus [=================> ] 0.391580 s [racon::Polisher::polish] generating consensus [==================> ] 0.407610 s [racon::Polisher::polish] generating consensus [===================>] 0.423591 s [racon::Polisher::polish] generating consensus [====================] 0.524935 s [racon::Polisher::] total = 0.798250 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (799 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.026228 s [racon::Polisher::initialize] loaded sequences 0.026226 s [racon::Polisher::initialize] loaded overlaps 0.007386 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.034615 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.047440 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.063315 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.080810 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.090775 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.093503 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.105027 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.113149 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.125720 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.135922 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.147001 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.164137 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.176037 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.189948 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.199045 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.213811 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.222862 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.230465 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.237123 s [racon::Polisher::initialize] aligning overlaps [====================] 0.259503 s [racon::Polisher::initialize] transformed data into windows 0.006692 s [racon::Polisher::polish] generating consensus [=> ] 0.023600 s [racon::Polisher::polish] generating consensus [==> ] 0.043123 s [racon::Polisher::polish] generating consensus [===> ] 0.062878 s [racon::Polisher::polish] generating consensus [====> ] 0.063375 s [racon::Polisher::polish] generating consensus [=====> ] 0.076322 s [racon::Polisher::polish] generating consensus [======> ] 0.084928 s [racon::Polisher::polish] generating consensus [=======> ] 0.098976 s [racon::Polisher::polish] generating consensus [========> ] 0.102251 s [racon::Polisher::polish] generating consensus [=========> ] 0.128860 s [racon::Polisher::polish] generating consensus [==========> ] 0.140904 s [racon::Polisher::polish] generating consensus [===========> ] 0.151178 s [racon::Polisher::polish] generating consensus [============> ] 0.155204 s [racon::Polisher::polish] generating consensus [=============> ] 0.167086 s [racon::Polisher::polish] generating consensus [==============> ] 0.167330 s [racon::Polisher::polish] generating consensus [===============> ] 0.194895 s [racon::Polisher::polish] generating consensus [================> ] 0.195243 s [racon::Polisher::polish] generating consensus [=================> ] 0.245633 s [racon::Polisher::polish] generating consensus [==================> ] 0.263860 s [racon::Polisher::polish] generating consensus [===================>] 0.281750 s [racon::Polisher::polish] generating consensus [====================] 0.286107 s [racon::Polisher::] total = 0.613030 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (613 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.069883 s [racon::Polisher::initialize] loaded sequences 0.040326 s [racon::Polisher::initialize] loaded overlaps 0.008585 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.303017 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.462139 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.607026 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.808994 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.972809 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.102224 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.276792 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.502321 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.733688 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.917711 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.078107 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.304639 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.552858 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.767000 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.023241 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.262107 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.486845 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.725792 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.977641 s [racon::Polisher::initialize] aligning overlaps [====================] 4.161443 s [racon::Polisher::initialize] transformed data into windows 0.092166 s [racon::Polisher::polish] generating consensus [=> ] 0.927673 s [racon::Polisher::polish] generating consensus [==> ] 1.608231 s [racon::Polisher::polish] generating consensus [===> ] 2.345084 s [racon::Polisher::polish] generating consensus [====> ] 2.951471 s [racon::Polisher::polish] generating consensus [=====> ] 3.608332 s [racon::Polisher::polish] generating consensus [======> ] 4.379792 s [racon::Polisher::polish] generating consensus [=======> ] 5.162185 s [racon::Polisher::polish] generating consensus [========> ] 5.730721 s [racon::Polisher::polish] generating consensus [=========> ] 6.462005 s [racon::Polisher::polish] generating consensus [==========> ] 7.322054 s [racon::Polisher::polish] generating consensus [===========> ] 8.034195 s [racon::Polisher::polish] generating consensus [============> ] 8.816701 s [racon::Polisher::polish] generating consensus [=============> ] 9.495858 s [racon::Polisher::polish] generating consensus [==============> ] 10.225063 s [racon::Polisher::polish] generating consensus [===============> ] 11.016974 s [racon::Polisher::polish] generating consensus [================> ] 11.448679 s [racon::Polisher::polish] generating consensus [=================> ] 12.322265 s [racon::Polisher::polish] generating consensus [==================> ] 13.141252 s [racon::Polisher::polish] generating consensus [===================>] 13.928236 s [racon::Polisher::polish] generating consensus [====================] 14.435450 s [racon::Polisher::] total = 18.812626 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18814 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.032146 s [racon::Polisher::initialize] loaded sequences 0.025752 s [racon::Polisher::initialize] loaded overlaps 0.011858 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.308442 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.467181 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.612527 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.815206 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.960853 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.098716 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.268378 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.495920 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.729589 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.919144 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.081217 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.315698 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.569897 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.785389 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.042911 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.282630 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.483665 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.739006 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.000554 s [racon::Polisher::initialize] aligning overlaps [====================] 4.159768 s [racon::Polisher::initialize] transformed data into windows 0.021977 s [racon::Polisher::polish] generating consensus [=> ] 1.293792 s [racon::Polisher::polish] generating consensus [==> ] 2.288900 s [racon::Polisher::polish] generating consensus [===> ] 3.272295 s [racon::Polisher::polish] generating consensus [====> ] 4.019762 s [racon::Polisher::polish] generating consensus [=====> ] 4.916264 s [racon::Polisher::polish] generating consensus [======> ] 5.914749 s [racon::Polisher::polish] generating consensus [=======> ] 6.987942 s [racon::Polisher::polish] generating consensus [========> ] 7.756652 s [racon::Polisher::polish] generating consensus [=========> ] 8.765718 s [racon::Polisher::polish] generating consensus [==========> ] 9.938453 s [racon::Polisher::polish] generating consensus [===========> ] 10.900828 s [racon::Polisher::polish] generating consensus [============> ] 11.971667 s [racon::Polisher::polish] generating consensus [=============> ] 12.966130 s [racon::Polisher::polish] generating consensus [==============> ] 13.963766 s [racon::Polisher::polish] generating consensus [===============> ] 14.973319 s [racon::Polisher::polish] generating consensus [================> ] 15.515917 s [racon::Polisher::polish] generating consensus [=================> ] 16.801628 s [racon::Polisher::polish] generating consensus [==================> ] 17.988555 s [racon::Polisher::polish] generating consensus [===================>] 19.065123 s [racon::Polisher::polish] generating consensus [====================] 19.799692 s [racon::Polisher::] total = 24.054809 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (24056 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.042029 s [racon::Polisher::initialize] loaded sequences 0.031611 s [racon::Polisher::initialize] loaded overlaps 0.006618 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.295249 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.450761 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.605835 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.819198 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.003954 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.134885 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.309953 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.535590 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.743102 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.952015 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.112229 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.340198 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.571025 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.760609 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.026316 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.267733 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.478700 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.705944 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.967375 s [racon::Polisher::initialize] aligning overlaps [====================] 4.160061 s [racon::Polisher::initialize] transformed data into windows 0.039477 s [racon::Polisher::polish] generating consensus [=> ] 0.944264 s [racon::Polisher::polish] generating consensus [==> ] 1.606442 s [racon::Polisher::polish] generating consensus [===> ] 2.314081 s [racon::Polisher::polish] generating consensus [====> ] 2.910254 s [racon::Polisher::polish] generating consensus [=====> ] 3.558037 s [racon::Polisher::polish] generating consensus [======> ] 4.318311 s [racon::Polisher::polish] generating consensus [=======> ] 5.085759 s [racon::Polisher::polish] generating consensus [========> ] 5.643602 s [racon::Polisher::polish] generating consensus [=========> ] 6.362544 s [racon::Polisher::polish] generating consensus [==========> ] 7.209429 s [racon::Polisher::polish] generating consensus [===========> ] 7.906427 s [racon::Polisher::polish] generating consensus [============> ] 8.672189 s [racon::Polisher::polish] generating consensus [=============> ] 9.336330 s [racon::Polisher::polish] generating consensus [==============> ] 10.088616 s [racon::Polisher::polish] generating consensus [===============> ] 10.868196 s [racon::Polisher::polish] generating consensus [================> ] 11.293280 s [racon::Polisher::polish] generating consensus [=================> ] 12.154557 s [racon::Polisher::polish] generating consensus [==================> ] 12.961758 s [racon::Polisher::polish] generating consensus [===================>] 13.746563 s [racon::Polisher::polish] generating consensus [====================] 14.313976 s [racon::Polisher::] total = 18.596557 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18597 ms) [----------] 10 tests from RaconPolishingTest (68844 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (68923 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/230454 and its subdirectories I: Current time: Thu Mar 13 08:36:34 -12 2025 I: pbuilder-time-stamp: 1741898194 Thu Mar 13 20:36:36 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Mar 13 20:36:36 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Mar 13 20:39:19 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Mar 13 20:39:20 UTC 2025 I: racon_1.5.0-3_arm64.changes: Format: 1.8 Date: Thu, 29 Sep 2022 14:39:55 +0200 Source: racon Binary: racon racon-dbgsym Architecture: arm64 Version: 1.5.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: racon - consensus module for raw de novo DNA assembly of long uncorrected Changes: racon (1.5.0-3) unstable; urgency=medium . * Standards-Version: 4.6.1 (routine-update) * Drop patch making racon compatible to old libthread_pool Checksums-Sha1: cd0e2f0a7abfb3dbfc05963ba24db0654d90788e 1018116 racon-dbgsym_1.5.0-3_arm64.deb 1282350b6cd0b525a4633cd0558f904b83658a72 6216 racon_1.5.0-3_arm64.buildinfo 9254143be57d293579b56469bc9f2c88788884be 3111004 racon_1.5.0-3_arm64.deb Checksums-Sha256: 6e36850fe27b188ea5ded11f31583e4c76a38ac97a3d8fb3a9b86c4b64af4ce0 1018116 racon-dbgsym_1.5.0-3_arm64.deb cf3933de1f04eec2f059b2ec0b3af229c7c3ece2ee507ac7bc15d61bb75e1288 6216 racon_1.5.0-3_arm64.buildinfo 4008e1872bac5d1abcd0261a610eb8f08d70101129d78849b1ef79cfcaf95917 3111004 racon_1.5.0-3_arm64.deb Files: 29bf114e1015110a627370491cb20685 1018116 debug optional racon-dbgsym_1.5.0-3_arm64.deb 8968895bd88e0ffcc1a0691877c68141 6216 science optional racon_1.5.0-3_arm64.buildinfo 10be58b5797d8239f52f936ced8a1e50 3111004 science optional racon_1.5.0-3_arm64.deb Thu Mar 13 20:39:21 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_11-88771.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.oK3qdURV/racon_1.5.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.oK3qdURV/racon_1.5.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.oK3qdURV/racon_1.5.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.oK3qdURV/b1/racon_1.5.0-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.oK3qdURV/b2/racon_1.5.0-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 222ms CPU time consumed: 222ms Thu Mar 13 20:39:21 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Thu Mar 13 20:39:21 UTC 2025 I: racon from trixie built successfully and reproducibly on arm64. Thu Mar 13 20:39:23 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Mar 13 20:39:23 UTC 2025 I: Submitting 8.0K b1/racon_1.5.0-3_arm64.buildinfo.asc Thu Mar 13 20:39:23 UTC 2025 I: Submitting 8.0K b2/racon_1.5.0-3_arm64.buildinfo.asc Thu Mar 13 20:39:24 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Mar 13 20:39:24 UTC 2025 I: Done submitting .buildinfo files. Thu Mar 13 20:39:24 UTC 2025 I: Removing signed racon_1.5.0-3_arm64.buildinfo.asc files: removed './b1/racon_1.5.0-3_arm64.buildinfo.asc' removed './b2/racon_1.5.0-3_arm64.buildinfo.asc'