Fri Feb 21 04:47:34 UTC 2025 I: starting to build voronota/trixie/arm64 on jenkins on '2025-02-21 04:47' Fri Feb 21 04:47:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/82820/console.log Fri Feb 21 04:47:34 UTC 2025 I: Downloading source for trixie/voronota=1.29.4307+ds-1 --2025-02-21 04:47:34-- http://deb.debian.org/debian/pool/main/v/voronota/voronota_1.29.4307%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2079 (2.0K) [text/prs.lines.tag] Saving to: ‘voronota_1.29.4307+ds-1.dsc’ 0K .. 100% 336M=0s 2025-02-21 04:47:34 (336 MB/s) - ‘voronota_1.29.4307+ds-1.dsc’ saved [2079/2079] Fri Feb 21 04:47:34 UTC 2025 I: voronota_1.29.4307+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: voronota Binary: voronota Architecture: any Version: 1.29.4307+ds-1 Maintainer: Debian Science Maintainers Uploaders: Andrius Merkys , Homepage: https://bitbucket.org/kliment/voronota Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/science-team/voronota Vcs-Git: https://salsa.debian.org/science-team/voronota.git Testsuite: autopkgtest Testsuite-Triggers: perl Build-Depends: cmake, debhelper-compat (= 13), help2man Package-List: voronota deb science optional arch=any Checksums-Sha1: 77c6dff727eb8256900bd88691c26bbb894c1d3e 26217108 voronota_1.29.4307+ds.orig.tar.xz 8563c39709ced4a5a20e0f2cb7594871b14208c0 5696 voronota_1.29.4307+ds-1.debian.tar.xz Checksums-Sha256: 0fe3bda294ac5309441236b2a67fedb5859a6bb338759c0b50b8af449b5d430c 26217108 voronota_1.29.4307+ds.orig.tar.xz b0a0855041a86e4ea639ccff43b417f802d5e63e4a413fd19a3ad3bfe2e3d711 5696 voronota_1.29.4307+ds-1.debian.tar.xz Files: 1aa6fe8bcffd35ccf914793741d8d306 26217108 voronota_1.29.4307+ds.orig.tar.xz c1cbdc898fbd4b71aa123eb826850f87 5696 voronota_1.29.4307+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAme0cx4SHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHfw0P/i1f82y7J/V09myURaOEetAvIc2xMfFe M2GJPx8wsLpXQ0XgKxdyVHxMt5ParC+je7od7wrRKDXX9+xCTXbeUlG9gsIuRAGa Lw/KdMgzmImxnL6X+RD3lvgBTYpJScU1TH6ocJeM+IDbpnx2ztsja34lgM0UYYrA xmzcSf5PdPS1Tuj26NDHoSvdAw47TYs56DzeR17Xn2w7e6eYN4brFGPvhLcN5AJ6 YbpzLpyTYMw1xRf74NdObfe2AWOvVr7uuwgtPC4AGVMR8YJGmb56mhxtHF1qS4C6 Vk1gUBVca3z6oHHIUAORcvjW4MHpBhj2cnX71pfWvPVatsotCBY4UimpNU+X8ZD2 OBuIlByDG1JEdDOE2etEGqewqvvefv0RP7+oGtKm+ddTiFrsv7mkTXQWmD1udz6h Z/AP3C/Nt7cWeH3+EHwD3X0JoRUubm1AYS6vzYCoyBZ0UAFws4LTbhN1E/z4tKDq cn4qdS05stDz8/Hr+9BQIKG0BIhuK7D99ePF8PelDfRL8AfFu9Cas/Y5jwjCcumT IxU7GKD+2qEKgsna2wIe8IJTruCUS7IfXHh3x08D8Jp3BJXAmBV+GVPjgDOTJ5SN n+QiedRnEADXjSu9RzNKBmRkDzzCNgWJ7hyz5iOQly/oQB3R1iQC+raafHTZN4is emtIiiZ3mAlw =ErlH -----END PGP SIGNATURE----- Fri Feb 21 04:47:34 UTC 2025 I: Checking whether the package is not for us Fri Feb 21 04:47:34 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri Feb 21 04:47:34 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri Feb 21 04:52:24 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Mar 25 23:10:36 -12 2026 I: pbuilder-time-stamp: 1774523436 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [voronota_1.29.4307+ds-1.dsc] I: copying [./voronota_1.29.4307+ds.orig.tar.xz] I: copying [./voronota_1.29.4307+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./voronota_1.29.4307+ds-1.dsc: unsupported subcommand dpkg-source: info: extracting voronota in voronota-1.29.4307+ds dpkg-source: info: unpacking voronota_1.29.4307+ds.orig.tar.xz dpkg-source: info: unpacking voronota_1.29.4307+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-packages.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3789014/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='203a15d3b5364ac2806789818d4c8f1b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3789014' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CPRf2XlB/pbuilderrc_RpJW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CPRf2XlB/b1 --logfile b1/build.log voronota_1.29.4307+ds-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3789014/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 38.1 MB of archives. After unpacking 148 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 28 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.0+git20250209.89ed161+ds-1 [326 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Fetched 38.1 MB in 0s (137 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.4-3_arm64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/voronota-1.29.4307+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../voronota_1.29.4307+ds-1_source.changes dpkg-buildpackage: info: source package voronota dpkg-buildpackage: info: source version 1.29.4307+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. 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FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/voronota-1.29.4307+ds -B/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/voronota.dir/build.make CMakeFiles/voronota.dir/depend make[3]: Entering directory 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CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_compare_contacts.cpp [ 17%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_compare_files_as_sets.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_blank.cpp [ 19%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_hypercut.cpp [ 21%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o [ 23%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_polygon_triangulation.cpp [ 26%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_ses.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_balls.cpp [ 28%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_contacts.cpp [ 30%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_values_bitmap.cpp [ 32%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_get_balls_from_atoms_file.cpp [ 36%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_place_membrane.cpp [ 39%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_plot_contacts.cpp [ 41%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls.cpp [ 43%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_clashes.cpp [ 45%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_distances.cpp In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices_in_parallel.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/bits/stl_tree.h:63, from /usr/include/c++/14/set:62, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/search_for_spherical_collisions.h:4, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_balls.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/bits/stl_tree.h:64: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_mock_solvent.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/bits/stl_tree.h:63, from /usr/include/c++/14/set:62, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/search_for_spherical_collisions.h:4, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_clashes.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/bits/stl_tree.h:64: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 47%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_sequences_pairings_stats.cpp [ 50%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts.cpp In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 52%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_depth_values.cpp [ 54%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_interface_exposure_values.cpp In file included from /usr/include/c++/14/vector:62, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/spheres_boundary_construction.h:4, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_ses.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/vector:63: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 56%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_simulating_unfolding.cpp [ 58%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_solvation_values.cpp [ 60%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_reprint_hbp.cpp [ 63%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_rotational_optimization_demo.cpp In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_contacts.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 65%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_run_script.cpp In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 67%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_energy.cpp [ 69%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_energy_stats.cpp [ 71%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_global_energy_by_cuts.cpp [ 73%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_potential.cpp [ 76%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_potentials_stats.cpp [ 78%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_quality.cpp [ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_scores.cpp [ 82%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_simulate_potential_for_membrane_proteins.cpp [ 84%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_split_atoms_file.cpp [ 86%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contact_environments.cpp [ 89%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contacts.cpp [ 91%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_points.cpp [ 93%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_balls_to_atoms_file.cpp [ 95%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_qa_scores_in_casp_format.cpp [ 97%] Building CXX object CMakeFiles/voronota.dir/src/voronota.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/voronota.cpp.o -MF CMakeFiles/voronota.dir/src/voronota.cpp.o.d -o CMakeFiles/voronota.dir/src/voronota.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:59:22: warning: 'template class std::pointer_to_unary_function' is deprecated [-Wdeprecated-declarations] 59 | typedef std::pointer_to_unary_function FunctionPtr; | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:1: /usr/include/c++/14/bits/stl_function.h:1102:11: note: declared here 1102 | class pointer_to_unary_function : public unary_function<_Arg, _Result> | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../auxiliaries/program_options_handler.h:4, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_run_script.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > 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CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o CMakeFiles/voronota.dir/src/voronota.cpp.o -o voronota make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' [100%] Built target voronota make[2]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/voronota/ cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/voronota-1.29.4307\+ds/debian/voronota AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/voronota-1.29.4307+ds -B/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-cadscore -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-contacts -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-resources -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-voromqa -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-volumes -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-pocket -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-membrane make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu' dh_installdocs dh_installchangelogs debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds' for BIN in ./voronota-*; \ do \ grep -qle --help ${BIN} && help2man ${BIN} --version-string 1.29.4307+ds --no-discard-stderr --no-info > ${BIN}.1; \ done make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/voronota/usr/bin/voronota was not linked against ld-linux-aarch64.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'voronota' in '../voronota_1.29.4307+ds-1_arm64.deb'. dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.29.4307+ds-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../voronota_1.29.4307+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../voronota_1.29.4307+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3789014 and its subdirectories I: Current time: Wed Mar 25 23:15:22 -12 2026 I: pbuilder-time-stamp: 1774523722 Fri Feb 21 04:52:25 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Feb 21 04:52:25 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Feb 21 05:10:02 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Feb 21 05:10:03 UTC 2025 I: voronota_1.29.4307+ds-1_arm64.changes: Format: 1.8 Date: Tue, 18 Feb 2025 06:34:53 -0500 Source: voronota Binary: voronota voronota-dbgsym Architecture: arm64 Version: 1.29.4307+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: voronota - Voronoi diagram-based tool to find atom contacts Changes: voronota (1.29.4307+ds-1) unstable; urgency=medium . * New upstream version 1.29.4307+ds * Repack to exclude embedded sources. * Watch GitHub tags. * Drop debian/man/. Checksums-Sha1: ef904ccba41a84b50e3eda453359296daca5286d 34856736 voronota-dbgsym_1.29.4307+ds-1_arm64.deb 09b5d2f5b2a6a01372012250c90787059745b401 5973 voronota_1.29.4307+ds-1_arm64.buildinfo 5d24ef70744833924738afae908a980753d1cb79 2451116 voronota_1.29.4307+ds-1_arm64.deb Checksums-Sha256: e462e0dee5fb6fde41062d4b61d6d7b07f5e14d6390c05df44b9b8cb774248c0 34856736 voronota-dbgsym_1.29.4307+ds-1_arm64.deb 2c5fac5fd02564204cbababbaa63a3fe1e00cc33bb5c1258db802a2dbf69edac 5973 voronota_1.29.4307+ds-1_arm64.buildinfo bd933fc2b9d61c6ff0695f79beb04abf334d27be3690b865fad6e5fe186dbaea 2451116 voronota_1.29.4307+ds-1_arm64.deb Files: 1237f7434ef34c6c4d042603f269e345 34856736 debug optional voronota-dbgsym_1.29.4307+ds-1_arm64.deb bce9dcdac862511f639672c51cac74e1 5973 science optional voronota_1.29.4307+ds-1_arm64.buildinfo 33ef5866bc66ef1f1957a4b90a63ba89 2451116 science optional voronota_1.29.4307+ds-1_arm64.deb Fri Feb 21 05:10:04 UTC 2025 I: diffoscope 288 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_5-82820.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CPRf2XlB/voronota_1.29.4307+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CPRf2XlB/voronota_1.29.4307+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CPRf2XlB/voronota_1.29.4307+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CPRf2XlB/b1/voronota_1.29.4307+ds-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.CPRf2XlB/b2/voronota_1.29.4307+ds-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 227ms CPU time consumed: 227ms Fri Feb 21 05:10:05 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Fri Feb 21 05:10:05 UTC 2025 I: voronota from trixie built successfully and reproducibly on arm64. Fri Feb 21 05:10:06 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Feb 21 05:10:06 UTC 2025 I: Submitting 8.0K b1/voronota_1.29.4307+ds-1_arm64.buildinfo.asc Fri Feb 21 05:10:07 UTC 2025 I: Submitting 8.0K b2/voronota_1.29.4307+ds-1_arm64.buildinfo.asc Fri Feb 21 05:10:07 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Feb 21 05:10:07 UTC 2025 I: Done submitting .buildinfo files. Fri Feb 21 05:10:08 UTC 2025 I: Removing signed voronota_1.29.4307+ds-1_arm64.buildinfo.asc files: removed './b1/voronota_1.29.4307+ds-1_arm64.buildinfo.asc' removed './b2/voronota_1.29.4307+ds-1_arm64.buildinfo.asc'