Tue Jan 21 13:09:49 UTC 2025 I: starting to build yanagiba/trixie/arm64 on jenkins on '2025-01-21 13:09'
Tue Jan 21 13:09:49 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/54225/console.log
Tue Jan 21 13:09:49 UTC 2025 I: Downloading source for trixie/yanagiba=1.0.0-5
--2025-01-21 13:09:49-- http://deb.debian.org/debian/pool/main/y/yanagiba/yanagiba_1.0.0-5.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2098 (2.0K) [text/prs.lines.tag]
Saving to: ‘yanagiba_1.0.0-5.dsc’
0K .. 100% 323M=0s
2025-01-21 13:09:49 (323 MB/s) - ‘yanagiba_1.0.0-5.dsc’ saved [2098/2098]
Tue Jan 21 13:09:49 UTC 2025 I: yanagiba_1.0.0-5.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: yanagiba
Binary: yanagiba
Architecture: all
Version: 1.0.0-5
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <nilesh@debian.org>, Pranav Ballaney <ballaneypranav@gmail.com>
Homepage: https://github.com/Adamtaranto/Yanagiba
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/yanagiba
Vcs-Git: https://salsa.debian.org/med-team/yanagiba.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pandas, python3-biopython, python3-nanomath
Package-List:
yanagiba deb science optional arch=all
Checksums-Sha1:
070aec5d2baab6c83c93c5b7fe016f9015a7b4d9 4801 yanagiba_1.0.0.orig.tar.gz
d7ece6659b235283362f1616ff444c952f95a587 21496 yanagiba_1.0.0-5.debian.tar.xz
Checksums-Sha256:
c1892649d626352994a0f08dc4fef2a8bb2dc96d806c1117e2b617295f374552 4801 yanagiba_1.0.0.orig.tar.gz
a890071c0f3acff428ca5a4681fadb5cb08bdc1b3a906978aa1c2bda3c171d87 21496 yanagiba_1.0.0-5.debian.tar.xz
Files:
1fa34e9ae5a063ac687f7183d2aadca6 4801 yanagiba_1.0.0.orig.tar.gz
73c49792029a9751acfded92b59d3733 21496 yanagiba_1.0.0-5.debian.tar.xz
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Tue Jan 21 13:09:49 UTC 2025 I: Checking whether the package is not for us
Tue Jan 21 13:09:49 UTC 2025 I: Starting 1st build on remote node codethink02-arm64.debian.net.
Tue Jan 21 13:09:49 UTC 2025 I: Preparing to do remote build '1' on codethink02-arm64.debian.net.
Tue Jan 21 13:13:37 UTC 2025 I: Deleting $TMPDIR on codethink02-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Jan 21 01:09:51 -12 2025
I: pbuilder-time-stamp: 1737464991
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [yanagiba_1.0.0-5.dsc]
I: copying [./yanagiba_1.0.0.orig.tar.gz]
I: copying [./yanagiba_1.0.0-5.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./yanagiba_1.0.0-5.dsc: unsupported subcommand
dpkg-source: info: extracting yanagiba in yanagiba-1.0.0
dpkg-source: info: unpacking yanagiba_1.0.0.orig.tar.gz
dpkg-source: info: unpacking yanagiba_1.0.0-5.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1297025/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='b5f9565c971e497abccb6d3a0f7535c7'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='1297025'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8onMsdjc/pbuilderrc_W21I --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8onMsdjc/b1 --logfile b1/build.log yanagiba_1.0.0-5.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink02-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/1297025/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pandas, python3-biopython, python3-nanomath
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19970 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-pandas; however:
Package python3-pandas is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-nanomath; however:
Package python3-nanomath is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-dateutil{a} python3-deprecated{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-nanomath{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-wrapt{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-scipy python3-tables shared-mime-info wget xdg-user-dirs
0 packages upgraded, 126 newly installed, 0 to remove and 0 not upgraded.
Need to get 67.9 MB of archives. After unpacking 286 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B]
Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 38 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 39 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB]
Get: 40 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB]
Get: 41 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB]
Get: 42 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 43 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 44 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 46 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 47 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 48 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 49 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 50 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 51 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB]
Get: 52 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 53 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 54 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB]
Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 66 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB]
Get: 67 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 68 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 69 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB]
Get: 70 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 71 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-3 [273 kB]
Get: 72 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 73 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.2 [216 kB]
Get: 74 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 75 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB]
Get: 76 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get: 77 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB]
Get: 78 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB]
Get: 79 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB]
Get: 80 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 81 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 82 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 83 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 84 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 85 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 86 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 87 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 88 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 89 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB]
Get: 90 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 91 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 92 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB]
Get: 93 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-12 [361 kB]
Get: 94 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB]
Get: 95 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 96 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB]
Get: 97 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB]
Get: 98 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 99 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB]
Get: 100 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB]
Get: 101 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get: 102 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 103 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB]
Get: 104 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB]
Get: 105 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB]
Get: 106 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB]
Get: 107 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get: 108 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB]
Get: 109 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB]
Get: 110 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB]
Get: 111 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 112 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.4.0-1.1 [498 kB]
Get: 113 http://deb.debian.org/debian trixie/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB]
Get: 114 http://deb.debian.org/debian trixie/main arm64 python3-freetype all 2.5.1-1 [89.3 kB]
Get: 115 http://deb.debian.org/debian trixie/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B]
Get: 116 http://deb.debian.org/debian trixie/main arm64 python3-reportlab all 4.2.5-1 [1117 kB]
Get: 117 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB]
Get: 118 http://deb.debian.org/debian trixie/main arm64 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 119 http://deb.debian.org/debian trixie/main arm64 python3-biopython arm64 1.84+dfsg-4+b1 [1644 kB]
Get: 120 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 121 http://deb.debian.org/debian trixie/main arm64 python3-wrapt arm64 1.15.0-4 [42.6 kB]
Get: 122 http://deb.debian.org/debian trixie/main arm64 python3-deprecated all 1.2.15-1 [14.5 kB]
Get: 123 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.2-1 [31.0 kB]
Get: 124 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB]
Get: 125 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB]
Get: 126 http://deb.debian.org/debian trixie/main arm64 python3-nanomath all 1.2.1+ds-1 [8120 B]
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invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
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Current default time zone: 'Etc/UTC'
Local time is now: Tue Jan 21 13:10:52 UTC 2025.
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Run 'dpkg-reconfigure tzdata' if you wish to change it.
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update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
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No schema files found: doing nothing.
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Not building database; man-db/auto-update is not 'true'.
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Reading package lists...
Building dependency tree...
Reading state information...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/yanagiba-1.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../yanagiba_1.0.0-5_source.changes
dpkg-buildpackage: info: source package yanagiba
dpkg-buildpackage: info: source version 1.0.0-5
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2025-Mar-03, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running clean
removing '/build/reproducible-path/yanagiba-1.0.0/.pybuild/cpython3_3.12_yanagiba/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2025-Mar-03, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2025-Mar-03, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running build
running build_py
creating /build/reproducible-path/yanagiba-1.0.0/.pybuild/cpython3_3.12_yanagiba/build/yanagiba
copying yanagiba/cmd_line.py -> /build/reproducible-path/yanagiba-1.0.0/.pybuild/cpython3_3.12_yanagiba/build/yanagiba
copying yanagiba/__init__.py -> /build/reproducible-path/yanagiba-1.0.0/.pybuild/cpython3_3.12_yanagiba/build/yanagiba
running egg_info
creating yanagiba.egg-info
writing yanagiba.egg-info/PKG-INFO
writing dependency_links to yanagiba.egg-info/dependency_links.txt
writing entry points to yanagiba.egg-info/entry_points.txt
writing requirements to yanagiba.egg-info/requires.txt
writing top-level names to yanagiba.egg-info/top_level.txt
writing manifest file 'yanagiba.egg-info/SOURCES.txt'
reading manifest file 'yanagiba.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'yanagiba.egg-info/SOURCES.txt'
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /build/reproducible-path/yanagiba-1.0.0/.pybuild/cpython3_3.12_yanagiba/build; python3.12 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/yanagiba/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2025-Mar-03, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running egg_info
writing yanagiba.egg-info/PKG-INFO
writing dependency_links to yanagiba.egg-info/dependency_links.txt
writing entry points to yanagiba.egg-info/entry_points.txt
writing requirements to yanagiba.egg-info/requires.txt
writing top-level names to yanagiba.egg-info/top_level.txt
reading manifest file 'yanagiba.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'yanagiba.egg-info/SOURCES.txt'
running install_lib
creating /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages
creating /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages/yanagiba
creating /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages/yanagiba/__pycache__
copying /build/reproducible-path/yanagiba-1.0.0/.pybuild/cpython3_3.12_yanagiba/build/yanagiba/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages/yanagiba/__pycache__
copying /build/reproducible-path/yanagiba-1.0.0/.pybuild/cpython3_3.12_yanagiba/build/yanagiba/__init__.py -> /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages/yanagiba
copying /build/reproducible-path/yanagiba-1.0.0/.pybuild/cpython3_3.12_yanagiba/build/yanagiba/cmd_line.py -> /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages/yanagiba
byte-compiling /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages/yanagiba/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages/yanagiba/cmd_line.py to cmd_line.cpython-312.pyc
running install_egg_info
Copying yanagiba.egg-info to /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/lib/python3.12/dist-packages/yanagiba-1.0.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing yanagiba script to /build/reproducible-path/yanagiba-1.0.0/debian/yanagiba/usr/bin
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installexamples -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'yanagiba' in '../yanagiba_1.0.0-5_all.deb'.
dpkg-genbuildinfo --build=binary -O../yanagiba_1.0.0-5_arm64.buildinfo
dpkg-genchanges --build=binary -O../yanagiba_1.0.0-5_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1297025 and its subdirectories
I: Current time: Tue Jan 21 01:13:36 -12 2025
I: pbuilder-time-stamp: 1737465216
Tue Jan 21 13:13:38 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net.
Tue Jan 21 13:13:38 UTC 2025 I: Preparing to do remote build '2' on codethink01-arm64.debian.net.
Tue Jan 21 13:15:37 UTC 2025 I: Deleting $TMPDIR on codethink01-arm64.debian.net.
Tue Jan 21 13:15:38 UTC 2025 I: yanagiba_1.0.0-5_arm64.changes:
Format: 1.8
Date: Tue, 01 Feb 2022 13:46:31 +0100
Source: yanagiba
Binary: yanagiba
Architecture: all
Version: 1.0.0-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
yanagiba - filter low quality Oxford Nanopore reads basecalled with Albacore
Changes:
yanagiba (1.0.0-5) unstable; urgency=medium
.
* Team upload.
* Really fix watch file.
Checksums-Sha1:
623ea62ca29a8b04239dbe8da2ef3475b3ed5c18 25596 yanagiba_1.0.0-5_all.deb
811fdb821e0fcd7e608f17b521934c9e978558c0 7620 yanagiba_1.0.0-5_arm64.buildinfo
Checksums-Sha256:
a276a97f40e3d7ed3120794f5489ae0da329d66af6db2a4d14202ba1edcade92 25596 yanagiba_1.0.0-5_all.deb
368a039157d5327c6afdda6b9b54cd6793c3328b1ecb5b6ba75104d42e84b91d 7620 yanagiba_1.0.0-5_arm64.buildinfo
Files:
98f4af8f4e257dfec322423ac78c5584 25596 science optional yanagiba_1.0.0-5_all.deb
cccc187bc90e38d8cf285a754603add4 7620 science optional yanagiba_1.0.0-5_arm64.buildinfo
Tue Jan 21 13:15:39 UTC 2025 I: diffoscope 285 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_4-54225.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8onMsdjc/yanagiba_1.0.0-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8onMsdjc/yanagiba_1.0.0-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8onMsdjc/yanagiba_1.0.0-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8onMsdjc/b1/yanagiba_1.0.0-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.8onMsdjc/b2/yanagiba_1.0.0-5_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.427s)
0.427s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.014s)
0.014s 12 calls diffoscope.comparators.binary.FilesystemFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 763ms
CPU time consumed: 760ms
Tue Jan 21 13:15:40 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists.
Tue Jan 21 13:15:40 UTC 2025 I: yanagiba from trixie built successfully and reproducibly on arm64.
Tue Jan 21 13:15:41 UTC 2025 I: Submitting .buildinfo files to external archives:
Tue Jan 21 13:15:41 UTC 2025 I: Submitting 12K b1/yanagiba_1.0.0-5_arm64.buildinfo.asc
Tue Jan 21 13:15:42 UTC 2025 I: Submitting 12K b2/yanagiba_1.0.0-5_arm64.buildinfo.asc
Tue Jan 21 13:15:44 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Tue Jan 21 13:15:44 UTC 2025 I: Done submitting .buildinfo files.
Tue Jan 21 13:15:44 UTC 2025 I: Removing signed yanagiba_1.0.0-5_arm64.buildinfo.asc files:
removed './b1/yanagiba_1.0.0-5_arm64.buildinfo.asc'
removed './b2/yanagiba_1.0.0-5_arm64.buildinfo.asc'