Mon Jan 13 13:36:17 UTC 2025 I: starting to build ataqv/trixie/armhf on jenkins on '2025-01-13 13:36' Mon Jan 13 13:36:17 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_16/12397/console.log Mon Jan 13 13:36:17 UTC 2025 I: Downloading source for trixie/ataqv=1.3.1+ds-2 --2025-01-13 13:36:17-- http://deb.debian.org/debian/pool/main/a/ataqv/ataqv_1.3.1%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2249 (2.2K) [text/prs.lines.tag] Saving to: ‘ataqv_1.3.1+ds-2.dsc’ 0K .. 100% 257M=0s 2025-01-13 13:36:17 (257 MB/s) - ‘ataqv_1.3.1+ds-2.dsc’ saved [2249/2249] Mon Jan 13 13:36:17 UTC 2025 I: ataqv_1.3.1+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ataqv Binary: ataqv Architecture: any Version: 1.3.1+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/ParkerLab/ataqv/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ataqv Vcs-Git: https://salsa.debian.org/med-team/ataqv.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3, debhelper Package-List: ataqv deb science optional arch=any Checksums-Sha1: d2533715129c79f7bc3e11a9673efedf0348303b 4068080 ataqv_1.3.1+ds.orig.tar.xz c8868f6738fdc44c87cc1b8218ed6e1255a37ddf 9384 ataqv_1.3.1+ds-2.debian.tar.xz Checksums-Sha256: 6e996bb0dfa6b92b17537af20680827fd66f5b91b2f0bb7268bf21ff1cffd939 4068080 ataqv_1.3.1+ds.orig.tar.xz 94a367bb722ed2d8e1377f5eb1c6faec9c1686e8ebccf654a9020e265f16f1ad 9384 ataqv_1.3.1+ds-2.debian.tar.xz Files: 2738a7faf0c6728c73c2b24fb895c2fa 4068080 ataqv_1.3.1+ds.orig.tar.xz 9514930e1d2305c54d62f5a91fd24f8e 9384 ataqv_1.3.1+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV8aB4WHGVtb2xsaWVy QGVtbHdrczk5OS5ldQAKCRB5PPZ+jw0R2oexEADK1tCVm5xk7aKKKYs/Mbk7HBfv gB2nNYYCDxxVCp49cv2wfyilMC+ehjuulbJXS+UHby9g3QEQMFF0Sz7s5zNeZ4xw nAOhbIwiQxQkfoTxspj1/LDOlwcIUVMTlu8grh+X9gDBtOxHNlkaIH83VxpltY1D QH9c8tM+r2uBbHDcYyrIhwSR4O7gP+ldz6Y+CAHrW0IABzjC08HXVozhEGWre7GD F1gyHEF3pJl3v7WQfJy5NLPvWJFs+IU+qh4aDVfzfEIaw418VvDuRBehxXKNLgSC dPibM6Vjbd1k2bQCf8PgjWStwNBxCrjJBXP/ep2U4wbeu0FSQQbSol8CybexBG0v eBmngiXK15tuGh8Y3Yng1J0ybGw4qXSKVJB6rn25G658ghxMxwFEz4cgQ7xp87lk oPCLflybE9ek1sZPTY2z57pXuhNv3brw6NRBxdEzKDU+xqoKSjm4k0jjLKmHNGw7 0wSXalkOhP/lfzIbRxca6BPWnfrx2cytKoBtfFpwonIrxsOVKQW9HDtERNCttR7c gKMikoRuhq3o2iGXFbor8DxmEuVosf8O9PGGwlkElAky5WG/e0j5t+VMKYkegaDj nYzB1nC40QZYfcEk0h++0myu3mnFgk0aGnM+4mIQuGwEyNaH1+RkzYcqUoV2h210 5eo6tuNPNsB0Ew7j4Q== =HHi0 -----END PGP SIGNATURE----- Mon Jan 13 13:36:17 UTC 2025 I: Checking whether the package is not for us Mon Jan 13 13:36:17 UTC 2025 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Mon Jan 13 13:36:17 UTC 2025 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Mon Jan 13 13:45:54 UTC 2025 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 13 01:36:24 -12 2025 I: pbuilder-time-stamp: 1736775384 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ataqv_1.3.1+ds-2.dsc] I: copying [./ataqv_1.3.1+ds.orig.tar.xz] I: copying [./ataqv_1.3.1+ds-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ataqv_1.3.1+ds-2.dsc: unsupported subcommand dpkg-source: info: extracting ataqv in ataqv-1.3.1+ds dpkg-source: info: unpacking ataqv_1.3.1+ds.orig.tar.xz dpkg-source: info: unpacking ataqv_1.3.1+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying modernize dpkg-source: info: applying no_cov dpkg-source: info: applying python3 dpkg-source: info: applying packaged_js dpkg-source: info: applying spelling dpkg-source: info: applying clean_less dpkg-source: info: applying reproducible_build I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19526/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='ae33a71f9bd54449a376e9b3492b4bfc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19526' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d3cB33Dl/pbuilderrc_tC2o --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d3cB33Dl/b1 --logfile b1/build.log ataqv_1.3.1+ds-2.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 6.1.0-29-armmp-lpae #1 SMP Debian 6.1.123-1 (2025-01-02) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/19526/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19567 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libncurses-dev; however: Package libncurses-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery-datatables; however: Package libjs-jquery-datatables is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery-datatables-extensions; however: Package libjs-jquery-datatables-extensions is not installed. pbuilder-satisfydepends-dummy depends on fonts-font-awesome; however: Package fonts-font-awesome is not installed. pbuilder-satisfydepends-dummy depends on node-normalize.css; however: Package node-normalize.css is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on node-d3; however: Package node-d3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-font-awesome{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjs-d3-format{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-datatables-extensions{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} node-commander{a} node-d3{a} node-d3-array{a} node-d3-axis{a} node-d3-brush{a} node-d3-chord{a} node-d3-collection{a} node-d3-color{a} node-d3-contour{a} node-d3-dispatch{a} node-d3-drag{a} node-d3-dsv{a} node-d3-ease{a} node-d3-fetch{a} node-d3-force{a} node-d3-format{a} node-d3-geo{a} node-d3-hierarchy{a} node-d3-interpolate{a} node-d3-path{a} node-d3-polygon{a} node-d3-quadtree{a} node-d3-queue{a} node-d3-random{a} node-d3-scale{a} node-d3-scale-chromatic{a} node-d3-selection{a} node-d3-shape{a} node-d3-time{a} node-d3-time-format{a} node-d3-timer{a} node-d3-transition{a} node-d3-voronoi{a} node-d3-zoom{a} node-iconv-lite{a} node-normalize.css{a} node-rw{a} node-safe-buffer{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 175 newly installed, 0 to remove and 0 not upgraded. Need to get 70.7 MB of archives. After unpacking 392 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf liblocale-gettext-perl armhf 1.07-7+b1 [14.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.8-3 [802 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.8-3 [1794 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.8-1 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-4 [256 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 14 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-6 [69.4 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-6 [146 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1824 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.8-3 [677 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.8-1 [9792 B] Get: 24 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.8-1 [27.9 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-4 [196 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-13 [84.7 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-4 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf comerr-dev armhf 2.1-1.47.2-1 [55.1 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.23 [90.6 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-4 [1489 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf debhelper all 13.23 [919 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-5+b1 [187 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libgssrpc4t64 armhf 1.21.3-3 [52.5 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libkadm5clnt-mit12 armhf 1.21.3-3 [37.0 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libkdb5-10t64 armhf 1.21.3-3 [37.1 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libkadm5srv-mit12 armhf 1.21.3-3 [46.7 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf krb5-multidev armhf 1.21.3-3 [126 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-4 [10.6 MB] Get: 65 http://deb.debian.org/debian trixie/main armhf libboost-atomic1.83.0 armhf 1.83.0-4 [233 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libboost-atomic1.83-dev armhf 1.83.0-4 [234 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libboost-chrono1.83.0t64 armhf 1.83.0-4 [238 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libboost-chrono1.83-dev armhf 1.83.0-4 [244 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libboost-chrono-dev armhf 1.83.0.2+b2 [4212 B] Get: 70 http://deb.debian.org/debian trixie/main armhf libboost-filesystem1.83.0 armhf 1.83.0-4 [271 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libboost-system1.83.0 armhf 1.83.0-4 [230 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libboost-system1.83-dev armhf 1.83.0-4 [232 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libboost-filesystem1.83-dev armhf 1.83.0-4 [286 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libboost-filesystem-dev armhf 1.83.0.2+b2 [3616 B] Get: 75 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-4 [308 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-5+b1 [10.1 MB] Get: 77 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-4 [337 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libboost-iostreams1.83-dev armhf 1.83.0-4 [261 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libboost-iostreams-dev armhf 1.83.0.2+b2 [3568 B] Get: 80 http://deb.debian.org/debian trixie/main armhf libboost-system-dev armhf 1.83.0.2+b2 [3724 B] Get: 81 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.19+dfsg-1 [163 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.11.1-1 [311 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libunbound8 armhf 1.22.0-1 [539 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libgnutls-dane0t64 armhf 3.8.8-2 [440 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libgnutls-openssl27t64 armhf 3.8.8-2 [440 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libidn2-dev armhf 2.3.7-2+b1 [119 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libp11-kit-dev armhf 0.25.5-3 [208 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libtasn1-6-dev armhf 4.19.0-3+b3 [93.2 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf nettle-dev armhf 3.10-1+b1 [1313 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libgnutls28-dev armhf 3.8.8-2 [1328 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libkrb5-dev armhf 1.21.3-3 [15.8 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libldap-dev armhf 2.5.19+dfsg-1 [276 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libnghttp3-dev armhf 1.6.0-2 [81.8 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls-dev armhf 1.9.1-1 [21.3 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libngtcp2-dev armhf 1.9.1-1 [165 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.3.2-2 [2385 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libzstd-dev armhf 1.5.6+dfsg-2 [326 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libcurl4-gnutls-dev armhf 8.11.1-1 [435 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libdeflate-dev armhf 1.22-1 [44.5 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libhts-dev armhf 1.20+ds-2 [1625 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libjs-d3-format all 1:1.4.5+~1.4.2-2 [17.7 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.5-2+b1 [82.3 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libncurses-dev armhf 6.5-2+b1 [310 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf node-commander all 9.4.1-1 [65.3 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf node-d3-array all 3.2.0+~cs5.0.6-2 [44.1 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf node-d3-axis all 1.0.12+~1.0.16-1 [13.7 kB] Get: 141 http://deb.debian.org/debian trixie/main armhf node-d3-dispatch all 1.0.6+~1.0.9-1 [9560 B] Get: 142 http://deb.debian.org/debian trixie/main armhf node-d3-selection all 1.4.1+~1.4.3-1 [42.1 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf node-d3-drag all 1.2.5+~1.2.5-1 [18.7 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf node-d3-color all 1.4.1+~1.4.2-1 [19.1 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf node-d3-interpolate all 1.4.0+~1.4.2-1 [23.3 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf node-d3-ease all 1.0.7+~1.0.11-1 [12.2 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf node-d3-timer all 1.0.10+~1.0.10-1 [10.3 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf node-d3-transition all 1.3.2+~1.3.2-1 [28.2 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf node-d3-brush all 1.1.6+~1.1.5-1 [185 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf node-d3-path all 1.0.9+~1.0.9-1 [10.2 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf node-d3-chord all 1.0.6+~1.0.11-1 [13.9 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf node-d3-collection all 1.0.7+~1.0.10-1 [16.9 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf node-d3-contour all 1.3.2+~1.3.3-1 [17.2 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf node-safe-buffer all 5.2.1+~cs2.1.2-3 [15.5 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf node-iconv-lite all 0.6.3-3 [115 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf node-d3-queue all 3.0.7-13 [10.2 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf node-rw all 1.3.3-5 [7428 B] Get: 158 http://deb.debian.org/debian trixie/main armhf node-d3-dsv all 1.2.0+~1.2.3-1 [17.4 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf node-d3-fetch all 1.2.0+~1.2.2-1 [9844 B] Get: 160 http://deb.debian.org/debian trixie/main armhf node-d3-quadtree all 1.0.7+~1.0.9-1 [16.0 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf node-d3-force all 2.1.1+~2.1.4-1 [30.2 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf node-d3-format all 1:1.4.5+~1.4.2-2 [12.6 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf node-d3-geo all 1.12.1+~1.12.4-1 [65.5 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf node-d3-hierarchy all 1.1.9+~1.1.8-1 [34.1 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf node-d3-polygon all 1.0.6+~1.0.8-1 [8580 B] Get: 166 http://deb.debian.org/debian trixie/main armhf node-d3-random all 1.1.2+~1.1.3-1 [8908 B] Get: 167 http://deb.debian.org/debian trixie/main armhf node-d3-time all 1.1.0+~1.1.1-1 [18.7 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf node-d3-time-format all 2.3.0+~2.3.1-1 [22.9 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf node-d3-scale all 2.2.2+~2.2.6-1 [42.7 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf node-d3-scale-chromatic all 1.5.0+~1.5.1-1 [21.4 kB] Get: 171 http://deb.debian.org/debian trixie/main armhf node-d3-shape all 1.3.7+~1.3.8-1 [54.8 kB] Get: 172 http://deb.debian.org/debian trixie/main armhf node-d3-voronoi all 1.1.4+~1.1.9-1 [19.8 kB] Get: 173 http://deb.debian.org/debian trixie/main armhf node-d3-zoom all 1.8.3+~1.8.4-1 [26.8 kB] Get: 174 http://deb.debian.org/debian trixie/main armhf node-d3 all 5.16.0+~cs5.28.10-2 [223 kB] Get: 175 http://deb.debian.org/debian trixie/main armhf node-normalize.css all 8.0.1-5 [12.7 kB] Fetched 70.7 MB in 7s (10.9 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19567 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.8-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.8-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_armhf.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:armhf (3.12.8-3) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19902 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_armhf.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libffi8:armhf. Preparing to unpack .../04-libffi8_3.4.6-1_armhf.deb ... Unpacking libffi8:armhf (3.4.6-1) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../05-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../06-libcom-err2_1.47.2-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.2-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../07-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../08-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../09-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../15-libreadline8t64_8.2-6_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-3_armhf.deb ... Unpacking python3.12 (3.12.8-3) ... 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Setting up libhtscodecs2:armhf (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up node-d3-timer (1.0.10+~1.0.10-1) ... Setting up node-d3-color (1.4.1+~1.4.2-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libboost1.83-dev:armhf (1.83.0-4) ... Setting up node-d3-interpolate (1.4.0+~1.4.2-1) ... Setting up node-d3-queue (3.0.7-13) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up libzstd-dev:armhf (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.2-13) ... Setting up node-d3-hierarchy (1.1.9+~1.1.8-1) ... Setting up node-d3-ease (1.0.7+~1.0.11-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up node-d3-scale-chromatic (1.5.0+~1.5.1-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libboost-regex1.83.0:armhf (1.83.0-4) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... 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Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libboost-regex1.83-dev:armhf (1.83.0-4) ... Setting up libssh2-1-dev:armhf (1.11.1-1) ... Setting up libidn2-dev:armhf (2.3.7-2+b1) ... Setting up node-d3-force (2.1.1+~2.1.4-1) ... Setting up node-d3-contour (1.3.2+~1.3.3-1) ... Setting up libreadline8t64:armhf (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up node-d3-brush (1.1.6+~1.1.5-1) ... Setting up groff-base (1.23.0-7) ... Setting up node-d3-dsv (1.2.0+~1.2.3-1) ... Setting up libboost-filesystem-dev:armhf (1.83.0.2+b2) ... Setting up libp11-kit-dev:armhf (0.25.5-3) ... Setting up libgnutls30t64:armhf (3.8.8-2) ... Setting up libgnutls-openssl27t64:armhf (3.8.8-2) ... Setting up libnghttp2-dev:armhf (1.64.0-1) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up libboost-iostreams1.83-dev:armhf (1.83.0-4) ... Setting up node-d3-zoom (1.8.3+~1.8.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up node-d3-fetch (1.2.0+~1.2.2-1) ... Setting up libboost-iostreams-dev:armhf (1.83.0.2+b2) ... Setting up node-d3 (5.16.0+~cs5.28.10-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libldap-2.5-0:armhf (2.5.19+dfsg-1) ... Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:armhf (3.8.8-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:armhf (1.21.3-3) ... Setting up libldap-dev:armhf (2.5.19+dfsg-1) ... Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Setting up libkadm5clnt-mit12:armhf (1.21.3-3) ... Setting up libgnutls28-dev:armhf (3.8.8-2) ... Setting up libpython3.12-stdlib:armhf (3.12.8-3) ... Setting up libkdb5-10t64:armhf (1.21.3-3) ... Setting up python3.12 (3.12.8-3) ... Setting up libcurl3t64-gnutls:armhf (8.11.1-1) ... Setting up debhelper (13.23) ... Setting up libngtcp2-crypto-gnutls-dev:armhf (1.9.1-1) ... Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5srv-mit12:armhf (1.21.3-3) ... Setting up libhts3t64:armhf (1.20+ds-2) ... Setting up libpython3-stdlib:armhf (3.12.8-1) ... Setting up krb5-multidev:armhf (1.21.3-3) ... Setting up python3 (3.12.8-1) ... Setting up libkrb5-dev:armhf (1.21.3-3) ... Setting up libcurl4-gnutls-dev:armhf (8.11.1-1) ... Setting up libhts-dev:armhf (1.20+ds-2) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ataqv-1.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ataqv_1.3.1+ds-2_source.changes dpkg-buildpackage: info: source package ataqv dpkg-buildpackage: info: source version 1.3.1+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/reproducible-path/ataqv-1.3.1+ds' make[1]: Leaving directory '/build/reproducible-path/ataqv-1.3.1+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/ataqv-1.3.1+ds' cp -sf /usr/share/nodejs/d3/dist/d3.min.js src/web/js/d3.min.js cp -sf /usr/share/javascript/jquery-datatables-extensions/JSZip/jszip.min.js src/web/js/jszip.min.js cp -sf /usr/share/javascript/jquery-datatables-extensions/Buttons/css/buttons.dataTables.min.css src/web/css/datatables.buttons.min.css cp -sf /usr/share/javascript/jquery-datatables/css/jquery.dataTables.min.css src/web/css/datatables.min.css cp -sf /usr/share/fonts-font-awesome/css/font-awesome.min.css src/web/css/font-awesome.min.css cp -sf /usr/share/javascript/normalize.css/normalize.css src/web/css/normalize.css cp -sf /usr/share/fonts-font-awesome/fonts/* src/web/fonts/ cp -s /usr/share/javascript/jquery/jquery.min.js \ /usr/share/javascript/jquery-datatables-extensions/pdfmake/build/pdfmake.min.js \ /usr/share/javascript/jquery-datatables/jquery.dataTables.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/dataTables.buttons.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.colVis.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.html5.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.print.min.js \ /usr/share/javascript/jquery-datatables-extensions/Responsive/js/dataTables.responsive.min.js \ src/web/js/ rm -f src/web/js/datatables.min.js make[1]: Leaving directory '/build/reproducible-path/ataqv-1.3.1+ds' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/ataqv-1.3.1+ds' dh_auto_build -- all testing/run_ataqv_tests make -j3 "INSTALL=install --strip-program=true" all testing/run_ataqv_tests make[2]: Entering directory '/build/reproducible-path/ataqv-1.3.1+ds' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o build/ataqv.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/ataqv.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o build/Features.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o build/HTS.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/HTS.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/HTS.hpp:10, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.hpp:12, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, ReferenceFeatureCollection>; _KeyOfValue = std::_Select1st, ReferenceFeatureCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferenceFeatureCollection> >]’: /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = ReferenceFeatureCollection; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferenceFeatureCollection> >]’, inlined from ‘void FeatureTree::add(Feature&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.cpp:122:27: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = ReferenceFeatureCollection; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferenceFeatureCollection> >]’, inlined from ‘ReferenceFeatureCollection* FeatureTree::get_reference_feature_collection(const std::string&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.cpp:127:32: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o build/IO.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/IO.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o build/Metrics.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o build/Peaks.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/HTS.hpp:10, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.hpp:12, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.hpp:13, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, ReferencePeakCollection>; _KeyOfValue = std::_Select1st, ReferencePeakCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferencePeakCollection> >]’: /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = ReferencePeakCollection; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferencePeakCollection> >]’, inlined from ‘ReferencePeakCollection* PeakTree::get_reference_peaks(const std::string&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:121:32: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o build/Utils.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Utils.cpp In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘std::vector PeakTree::list_peaks()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:200:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘std::vector PeakTree::list_peaks()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:200:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘void ReferencePeakCollection::sort()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:105:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘void ReferencePeakCollection::sort()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:105:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = ReferencePeakCollection; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferencePeakCollection> >]’, inlined from ‘void PeakTree::add(Peak&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:110:24: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/HTS.hpp:10, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.hpp:12, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1868:25, inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1884:27: /usr/include/c++/14/bits/stl_algo.h:1593:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1593 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Peak&, const Peak&)]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector PeakTree::list_peaks_by_size_descending()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:224:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Peak&, const Peak&)]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector PeakTree::list_peaks_by_size_descending()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:224:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Peak&, const Peak&)]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector PeakTree::list_peaks_by_overlapping_hqaa_descending()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:212:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Peak&, const Peak&)]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector PeakTree::list_peaks_by_overlapping_hqaa_descending()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:212:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/run_ataqv_tests.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/run_ataqv_tests.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/test_features.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_features.cpp In file included from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_features.cpp:1: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_features.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____167()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_features.cpp:171:47: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 171 | REQUIRE_THROWS_AS(collection.add(f), std::out_of_range); | ^~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/catch.hpp:76: /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Feature; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.hpp:16, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:21: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 2082 | basic_json(std::initializer_list init, | ^~~~~~~~~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp: In member function ‘nlohmann::json Library::to_json()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1378:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1378 | }; | ^ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘void ____C_A_T_C_H____T_E_S_T____61()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_features.cpp:67:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘void ____C_A_T_C_H____T_E_S_T____61()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_features.cpp:67:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/test_hts.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_hts.cpp In file included from /usr/include/c++/14/bits/stl_pair.h:61, from /usr/include/c++/14/tuple:38, from /usr/include/c++/14/mutex:40, from /usr/include/c++/14/future:40, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:10: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2554:13, inlined from ‘static void nlohmann::detail::external_constructor::construct(BasicJsonType&, typename BasicJsonType::number_float_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:277:15, inlined from ‘void nlohmann::detail::to_json(BasicJsonType&, FloatType) [with BasicJsonType = nlohmann::basic_json<>; FloatType = long double; typename std::enable_if::value, int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:545:59, inlined from ‘decltype ((nlohmann::detail::to_json(j, forward(val)), void())) nlohmann::detail::to_json_fn::call(BasicJsonType&, T&&, nlohmann::detail::priority_tag<1>) const [with BasicJsonType = nlohmann::basic_json<>; T = const long double&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:837:23, inlined from ‘void nlohmann::detail::to_json_fn::operator()(BasicJsonType&, T&&) const [with BasicJsonType = nlohmann::basic_json<>; T = const long double&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:852:20, inlined from ‘static void nlohmann::adl_serializer< , >::to_json(BasicJsonType&, ValueType&&) [with BasicJsonType = nlohmann::basic_json<>; ValueType = const long double&; = long double; = void]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json::basic_json(CompatibleType&&) [with CompatibleType = const long double&; U = long double; typename std::enable_if<((((! std::is_base_of, U>::value) && (! std::is_same >::value)) && (! nlohmann::detail::is_basic_json_nested_type, U>::value)) && nlohmann::detail::has_to_json, U>::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2009:35, inlined from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = nlohmann::basic_json<>; _Args = {const long double&}]’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = nlohmann::basic_json<>*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:120:21, inlined from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = nlohmann::basic_json<>*; bool _TrivialValueTypes = false]’ at /usr/include/c++/14/bits/stl_uninitialized.h:137:32, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = nlohmann::basic_json<>*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = nlohmann::basic_json<>*; _Tp = nlohmann::basic_json<>]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’ at /usr/include/c++/14/bits/stl_vector.h:1697:33, inlined from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’ at /usr/include/c++/14/bits/stl_vector.h:711:23, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::vector, std::allocator > >; _Args = {__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >}; _Tp = std::vector, std::allocator > >]’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘static T* nlohmann::basic_json::create(Args&& ...) [with T = std::vector, std::allocator > >; Args = {__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >}; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:1634:24, inlined from ‘static void nlohmann::detail::external_constructor::construct(BasicJsonType&, const CompatibleArrayType&) [with BasicJsonType = nlohmann::basic_json<>; CompatibleArrayType = std::vector; typename std::enable_if<(! std::is_same::value), int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:332:77, inlined from ‘void nlohmann::detail::to_json(BasicJsonType&, const CompatibleArrayType&) [with BasicJsonType = nlohmann::basic_json<>; CompatibleArrayType = std::vector; typename std::enable_if<(is_compatible_array_type::value || std::is_same::value), int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:581:52, inlined from ‘decltype ((nlohmann::detail::to_json(j, forward(val)), void())) nlohmann::detail::to_json_fn::call(BasicJsonType&, T&&, nlohmann::detail::priority_tag<1>) const [with BasicJsonType = nlohmann::basic_json<>; T = const std::vector&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:837:23, inlined from ‘void nlohmann::detail::to_json_fn::operator()(BasicJsonType&, T&&) const [with BasicJsonType = nlohmann::basic_json<>; T = const std::vector&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:852:20, inlined from ‘static void nlohmann::adl_serializer< , >::to_json(BasicJsonType&, ValueType&&) [with BasicJsonType = nlohmann::basic_json<>; ValueType = const std::vector&; = std::vector; = void]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json::basic_json(CompatibleType&&) [with CompatibleType = const std::vector&; U = std::vector; typename std::enable_if<((((! std::is_base_of, U>::value) && (! std::is_same >::value)) && (! nlohmann::detail::is_basic_json_nested_type, U>::value)) && nlohmann::detail::has_to_json, U>::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2009:35, inlined from ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string; _U2 = std::vector; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = const std::__cxx11::basic_string; _T2 = nlohmann::basic_json<>]’ at /usr/include/c++/14/bits/stl_pair.h:780:22, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::pair, nlohmann::basic_json<> >; _Args = {const std::pair, std::allocator >, std::vector > >&}; _Tp = std::_Rb_tree_node, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::pair, nlohmann::basic_json<> >; _Args = {const std::pair, std::allocator >, std::vector > >&}; _Tp = std::_Rb_tree_node, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_construct_node(_Link_type, _Args&& ...) [with _Args = {const std::pair, std::allocator >, std::vector > >&}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:593:32, inlined from ‘std::_Rb_tree_node<_Val>* std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_create_node(_Args&& ...) [with _Args = {const std::pair, std::allocator >, std::vector > >&}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:610:21, inlined from ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Auto_node::_Auto_node(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>&, _Args&& ...) [with _Args = {const std::pair, std::allocator >, std::vector > >&}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:1633:32, inlined from ‘std::pair, bool> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_unique(_Args&& ...) [with _Args = {const std::pair, std::allocator >, std::vector > >&}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:2430:13, inlined from ‘std::__enable_if_t<((bool)(! std::is_same<_Val, typename std::iterator_traits<_InputIterator>::value_type>::value))> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_range_unique(_InputIterator, _InputIterator) [with _InputIterator = std::_Rb_tree_const_iterator, std::vector > >; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:1108:23, inlined from ‘std::map<_Key, _Tp, _Compare, _Alloc>::map(_InputIterator, _InputIterator) [with _InputIterator = std::_Rb_tree_const_iterator, std::vector > >; _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_map.h:287:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::map, nlohmann::basic_json<>, std::less >, std::allocator, nlohmann::basic_json<> > > >; _Args = {std::_Rb_tree_const_iterator, std::allocator >, std::vector > > >, std::_Rb_tree_const_iterator, std::allocator >, std::vector > > >}; _Tp = std::map, nlohmann::basic_json<>, std::less >, std::allocator, nlohmann::basic_json<> > > >]’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘static T* nlohmann::basic_json::create(Args&& ...) [with T = std::map, nlohmann::basic_json<>, std::less >, std::allocator, nlohmann::basic_json<> > > >; Args = {std::_Rb_tree_const_iterator, std::allocator >, std::vector > > >, std::_Rb_tree_const_iterator, std::allocator >, std::vector > > >}; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:1634:24, inlined from ‘static void nlohmann::detail::external_constructor::construct(BasicJsonType&, const CompatibleObjectType&) [with BasicJsonType = nlohmann::basic_json<>; CompatibleObjectType = std::map, std::vector >; typename std::enable_if<(! std::is_same::value), int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:358:79, inlined from ‘void nlohmann::detail::to_json(BasicJsonType&, const CompatibleObjectType&) [with BasicJsonType = nlohmann::basic_json<>; CompatibleObjectType = std::map, std::vector >; typename std::enable_if::value, int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:590:53, inlined from ‘decltype ((nlohmann::detail::to_json(j, forward(val)), void())) nlohmann::detail::to_json_fn::call(BasicJsonType&, T&&, nlohmann::detail::priority_tag<1>) const [with BasicJsonType = nlohmann::basic_json<>; T = std::map, std::vector >&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:837:23, inlined from ‘void nlohmann::detail::to_json_fn::operator()(BasicJsonType&, T&&) const [with BasicJsonType = nlohmann::basic_json<>; T = std::map, std::vector >&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:852:20, inlined from ‘static void nlohmann::adl_serializer< , >::to_json(BasicJsonType&, ValueType&&) [with BasicJsonType = nlohmann::basic_json<>; ValueType = std::map, std::vector >&; = std::map, std::vector >; = void]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json::basic_json(CompatibleType&&) [with CompatibleType = std::map, std::vector >&; U = std::map, std::vector >; typename std::enable_if<((((! std::is_base_of, U>::value) && (! std::is_same >::value)) && (! nlohmann::detail::is_basic_json_nested_type, U>::value)) && nlohmann::detail::has_to_json, U>::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2009:35, inlined from ‘nlohmann::json Metrics::to_json()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: /usr/include/c++/14/bits/move.h:223:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 223 | __a = _GLIBCXX_MOVE(__b); | ^~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp: In member function ‘nlohmann::json Metrics::to_json()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:277:15: note: ‘’ declared here 277 | j = BasicJsonType{}; | ~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1568:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1568 | }; | ^ In file included from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_hts.cpp:3: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_hts.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____169()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_hts.cpp:200:57: warning: catching polymorphic type ‘class HTSException’ by value [-Wcatch-value=] 200 | REQUIRE_THROWS_AS(record_to_string(header, record), HTSException); | ^~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/test_io.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_io.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/test_metrics.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/test_peaks.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_peaks.cpp In file included from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_peaks.cpp:1: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_peaks.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____172()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_peaks.cpp:181:44: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 181 | REQUIRE_THROWS_AS(rpc.add(peak3), std::out_of_range); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp:3: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____170()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp:173:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 173 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp:178:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 178 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____243()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp:249:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 249 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____252()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_metrics.cpp:259:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 259 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/14/memory:69, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/catch.hpp:568: /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*]’: /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*; _Tp = Peak]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = Peak; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from ‘ReferencePeakCollection::ReferencePeakCollection(const ReferencePeakCollection&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.hpp:29:7, inlined from ‘void ____C_A_T_C_H____T_E_S_T____155()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_peaks.cpp:166:68: /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*; _Tp = Peak]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = Peak; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from ‘ReferencePeakCollection::ReferencePeakCollection(const ReferencePeakCollection&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.hpp:29:7, inlined from ‘void ____C_A_T_C_H____T_E_S_T____100()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_peaks.cpp:125:68: /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = Peak*; _Tp = Peak]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = Peak; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from ‘ReferencePeakCollection::ReferencePeakCollection(const ReferencePeakCollection&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.hpp:29:7, inlined from ‘void ____C_A_T_C_H____T_E_S_T____100()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_peaks.cpp:131:70: /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/catch.hpp:569: /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:3730:38: /usr/include/c++/14/bits/stl_vector.h:1442:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1442 | _M_fill_insert(begin() + __offset, __n, __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/test_utils.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/test_utils.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/Features.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/HTS.hpp:10, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.hpp:12, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, ReferenceFeatureCollection>; _KeyOfValue = std::_Select1st, ReferenceFeatureCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferenceFeatureCollection> >]’: /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = ReferenceFeatureCollection; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferenceFeatureCollection> >]’, inlined from ‘void FeatureTree::add(Feature&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.cpp:122:27: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = ReferenceFeatureCollection; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferenceFeatureCollection> >]’, inlined from ‘ReferenceFeatureCollection* FeatureTree::get_reference_feature_collection(const std::string&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.cpp:127:32: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/HTS.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/HTS.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/IO.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/IO.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/Metrics.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/Peaks.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/HTS.hpp:10, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.hpp:12, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.hpp:13, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, ReferencePeakCollection>; _KeyOfValue = std::_Select1st, ReferencePeakCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferencePeakCollection> >]’: /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = ReferencePeakCollection; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferencePeakCollection> >]’, inlined from ‘ReferencePeakCollection* PeakTree::get_reference_peaks(const std::string&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:121:32: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘std::vector PeakTree::list_peaks()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:200:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘std::vector PeakTree::list_peaks()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:200:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘void ReferencePeakCollection::sort()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:105:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘void ReferencePeakCollection::sort()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:105:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = ReferencePeakCollection; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferencePeakCollection> >]’, inlined from ‘void PeakTree::add(Peak&)’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:110:24: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1868:25, inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1884:27: /usr/include/c++/14/bits/stl_algo.h:1593:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1593 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/Utils.o -c /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Utils.cpp In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Peak&, const Peak&)]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector PeakTree::list_peaks_by_size_descending()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:224:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Peak&, const Peak&)]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector PeakTree::list_peaks_by_size_descending()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:224:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Peak&, const Peak&)]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector PeakTree::list_peaks_by_overlapping_hqaa_descending()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:212:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Peak&, const Peak&)]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector PeakTree::list_peaks_by_overlapping_hqaa_descending()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Peaks.cpp:212:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o build/ataqv build/ataqv.o build/Features.o build/HTS.o build/IO.o build/Metrics.o build/Peaks.o build/Utils.o -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/HTS.hpp:10, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Features.hpp:12, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.hpp:16, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:21: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 2082 | basic_json(std::initializer_list init, | ^~~~~~~~~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp: In member function ‘nlohmann::json Library::to_json()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1380:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1380 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1378:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1378 | }; | ^ In file included from /usr/include/c++/14/bits/stl_pair.h:61, from /usr/include/c++/14/tuple:38, from /usr/include/c++/14/mutex:40, from /usr/include/c++/14/future:40, from /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:10: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2554:13, inlined from ‘static void nlohmann::detail::external_constructor::construct(BasicJsonType&, typename BasicJsonType::number_float_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:277:15, inlined from ‘void nlohmann::detail::to_json(BasicJsonType&, FloatType) [with BasicJsonType = nlohmann::basic_json<>; FloatType = long double; typename std::enable_if::value, int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:545:59, inlined from ‘decltype ((nlohmann::detail::to_json(j, forward(val)), void())) nlohmann::detail::to_json_fn::call(BasicJsonType&, T&&, nlohmann::detail::priority_tag<1>) const [with BasicJsonType = nlohmann::basic_json<>; T = const long double&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:837:23, inlined from ‘void nlohmann::detail::to_json_fn::operator()(BasicJsonType&, T&&) const [with BasicJsonType = nlohmann::basic_json<>; T = const long double&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:852:20, inlined from ‘static void nlohmann::adl_serializer< , >::to_json(BasicJsonType&, ValueType&&) [with BasicJsonType = nlohmann::basic_json<>; ValueType = const long double&; = long double; = void]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json::basic_json(CompatibleType&&) [with CompatibleType = const long double&; U = long double; typename std::enable_if<((((! std::is_base_of, U>::value) && (! std::is_same >::value)) && (! nlohmann::detail::is_basic_json_nested_type, U>::value)) && nlohmann::detail::has_to_json, U>::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2009:35, inlined from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = nlohmann::basic_json<>; _Args = {const long double&}]’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = nlohmann::basic_json<>*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:120:21, inlined from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = nlohmann::basic_json<>*; bool _TrivialValueTypes = false]’ at /usr/include/c++/14/bits/stl_uninitialized.h:137:32, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = nlohmann::basic_json<>*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = nlohmann::basic_json<>*; _Tp = nlohmann::basic_json<>]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’ at /usr/include/c++/14/bits/stl_vector.h:1697:33, inlined from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’ at /usr/include/c++/14/bits/stl_vector.h:711:23, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::vector, std::allocator > >; _Args = {__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >}; _Tp = std::vector, std::allocator > >]’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘static T* nlohmann::basic_json::create(Args&& ...) [with T = std::vector, std::allocator > >; Args = {__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >}; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:1634:24, inlined from ‘static void nlohmann::detail::external_constructor::construct(BasicJsonType&, const CompatibleArrayType&) [with BasicJsonType = nlohmann::basic_json<>; CompatibleArrayType = std::vector; typename std::enable_if<(! std::is_same::value), int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:332:77, inlined from ‘void nlohmann::detail::to_json(BasicJsonType&, const CompatibleArrayType&) [with BasicJsonType = nlohmann::basic_json<>; CompatibleArrayType = std::vector; typename std::enable_if<(is_compatible_array_type::value || std::is_same::value), int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:581:52, inlined from ‘decltype ((nlohmann::detail::to_json(j, forward(val)), void())) nlohmann::detail::to_json_fn::call(BasicJsonType&, T&&, nlohmann::detail::priority_tag<1>) const [with BasicJsonType = nlohmann::basic_json<>; T = const std::vector&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:837:23, inlined from ‘void nlohmann::detail::to_json_fn::operator()(BasicJsonType&, T&&) const [with BasicJsonType = nlohmann::basic_json<>; T = const std::vector&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:852:20, inlined from ‘static void nlohmann::adl_serializer< , >::to_json(BasicJsonType&, ValueType&&) [with BasicJsonType = nlohmann::basic_json<>; ValueType = const std::vector&; = std::vector; = void]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json::basic_json(CompatibleType&&) [with CompatibleType = const std::vector&; U = std::vector; typename std::enable_if<((((! std::is_base_of, U>::value) && (! std::is_same >::value)) && (! nlohmann::detail::is_basic_json_nested_type, U>::value)) && nlohmann::detail::has_to_json, U>::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2009:35, inlined from ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string; _U2 = std::vector; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = const std::__cxx11::basic_string; _T2 = nlohmann::basic_json<>]’ at /usr/include/c++/14/bits/stl_pair.h:780:22, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::pair, nlohmann::basic_json<> >; _Args = {const std::pair, std::allocator >, std::vector > >&}; _Tp = std::_Rb_tree_node, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::pair, nlohmann::basic_json<> >; _Args = {const std::pair, std::allocator >, std::vector > >&}; _Tp = std::_Rb_tree_node, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_construct_node(_Link_type, _Args&& ...) [with _Args = {const std::pair, std::allocator >, std::vector > >&}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:593:32, inlined from ‘std::_Rb_tree_node<_Val>* std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_create_node(_Args&& ...) [with _Args = {const std::pair, std::allocator >, std::vector > >&}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:610:21, inlined from ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Auto_node::_Auto_node(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>&, _Args&& ...) [with _Args = {const std::pair, std::allocator >, std::vector > >&}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:1633:32, inlined from ‘std::pair, bool> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_unique(_Args&& ...) [with _Args = {const std::pair, std::allocator >, std::vector > >&}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:2430:13, inlined from ‘std::__enable_if_t<((bool)(! std::is_same<_Val, typename std::iterator_traits<_InputIterator>::value_type>::value))> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_range_unique(_InputIterator, _InputIterator) [with _InputIterator = std::_Rb_tree_const_iterator, std::vector > >; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_tree.h:1108:23, inlined from ‘std::map<_Key, _Tp, _Compare, _Alloc>::map(_InputIterator, _InputIterator) [with _InputIterator = std::_Rb_tree_const_iterator, std::vector > >; _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’ at /usr/include/c++/14/bits/stl_map.h:287:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::map, nlohmann::basic_json<>, std::less >, std::allocator, nlohmann::basic_json<> > > >; _Args = {std::_Rb_tree_const_iterator, std::allocator >, std::vector > > >, std::_Rb_tree_const_iterator, std::allocator >, std::vector > > >}; _Tp = std::map, nlohmann::basic_json<>, std::less >, std::allocator, nlohmann::basic_json<> > > >]’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘static T* nlohmann::basic_json::create(Args&& ...) [with T = std::map, nlohmann::basic_json<>, std::less >, std::allocator, nlohmann::basic_json<> > > >; Args = {std::_Rb_tree_const_iterator, std::allocator >, std::vector > > >, std::_Rb_tree_const_iterator, std::allocator >, std::vector > > >}; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:1634:24, inlined from ‘static void nlohmann::detail::external_constructor::construct(BasicJsonType&, const CompatibleObjectType&) [with BasicJsonType = nlohmann::basic_json<>; CompatibleObjectType = std::map, std::vector >; typename std::enable_if<(! std::is_same::value), int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:358:79, inlined from ‘void nlohmann::detail::to_json(BasicJsonType&, const CompatibleObjectType&) [with BasicJsonType = nlohmann::basic_json<>; CompatibleObjectType = std::map, std::vector >; typename std::enable_if::value, int>::type = 0]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:590:53, inlined from ‘decltype ((nlohmann::detail::to_json(j, forward(val)), void())) nlohmann::detail::to_json_fn::call(BasicJsonType&, T&&, nlohmann::detail::priority_tag<1>) const [with BasicJsonType = nlohmann::basic_json<>; T = std::map, std::vector >&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:837:23, inlined from ‘void nlohmann::detail::to_json_fn::operator()(BasicJsonType&, T&&) const [with BasicJsonType = nlohmann::basic_json<>; T = std::map, std::vector >&]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:852:20, inlined from ‘static void nlohmann::adl_serializer< , >::to_json(BasicJsonType&, ValueType&&) [with BasicJsonType = nlohmann::basic_json<>; ValueType = std::map, std::vector >&; = std::map, std::vector >; = void]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json::basic_json(CompatibleType&&) [with CompatibleType = std::map, std::vector >&; U = std::map, std::vector >; typename std::enable_if<((((! std::is_base_of, U>::value) && (! std::is_same >::value)) && (! nlohmann::detail::is_basic_json_nested_type, U>::value)) && nlohmann::detail::has_to_json, U>::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:2009:35, inlined from ‘nlohmann::json Metrics::to_json()’ at /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: /usr/include/c++/14/bits/move.h:223:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 223 | __a = _GLIBCXX_MOVE(__b); | ^~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp: In member function ‘nlohmann::json Metrics::to_json()’: /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/json.hpp:277:15: note: ‘’ declared here 277 | j = BasicJsonType{}; | ~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1570:1: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1570 | } | ^ /build/reproducible-path/ataqv-1.3.1+ds/src/cpp/Metrics.cpp:1568:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1568 | }; | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ataqv-1.3.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/build/reproducible-path/ataqv-1.3.1+ds/src/cpp -D LINUX -o testing/run_ataqv_tests testing/run_ataqv_tests.o testing/test_features.o testing/test_hts.o testing/test_io.o testing/test_metrics.o testing/test_peaks.o testing/test_utils.o testing/Features.o testing/HTS.o testing/IO.o testing/Metrics.o testing/Peaks.o testing/Utils.o -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread make[2]: Leaving directory '/build/reproducible-path/ataqv-1.3.1+ds' make[1]: Leaving directory '/build/reproducible-path/ataqv-1.3.1+ds' dh_auto_test make -j3 test make[1]: Entering directory '/build/reproducible-path/ataqv-1.3.1+ds' [E::sam_format1_append] Corrupted aux data for read SRR891268.122333488 flag 83 Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Loading TSS file 'hg19.tss.refseq.bed.gz'. Excluding TSS [chr11 10530722 10530723 MTRNR2L8 0 -] which overlaps excluded region [chr11 10529403 10531969 Low_mappability_island 1000 .] Excluding TSS [chr12 118573688 118573689 PEBP1 0 +] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding TSS [chr14 105196180 105196181 ADSSL1 0 +] which overlaps excluded region [chr14 105195912 105196275 TAR1 1000 .] Excluding TSS [chr17 22022436 22022437 MTRNR2L1 0 +] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding TSS [chr20 55934877 55934878 MTRNR2L3 0 -] which overlaps excluded region [chr20 55932703 55936114 chrM 1000 .] Excluding TSS [chr5 79946853 79946854 MTRNR2L2 0 -] which overlaps excluded region [chr5 79945807 79948223 Low_mappability_island 1000 .] Excluding TSS [chr6 62284007 62284008 MTRNR2L9 0 +] which overlaps excluded region [chr6 62283966 62284581 Low_mappability_island 1000 .] Excluding TSS [chr7 57207570 57207571 ZNF479 0 -] which overlaps excluded region [chr7 57205319 57210318 BSR/Beta 1000 .] Excluding TSS [chr7 63688851 63688852 ZNF679 0 +] which overlaps excluded region [chr7 63686197 63693336 BSR/Beta 1000 .] Excluding TSS [chr7 142374130 142374131 MTRNR2L6 0 +] which overlaps excluded region [chr7 142372972 142375638 Low_mappability_island 1000 .] Excluding TSS [chrX 55208943 55208944 MTRNR2L10 0 -] which overlaps excluded region [chrX 55204685 55210460 chrM 1000 .] Excluding TSS [chrY 25130409 25130410 BPY2B 0 +] which overlaps excluded region [chrY 25122419 25160800 BSR/Beta 1000 .] Excluding TSS [chrY 26764150 26764151 BPY2B 0 +] which overlaps excluded region [chrY 26756160 26794538 BSR/Beta 1000 .] Excluding TSS [chrY 27198250 27198251 BPY2B 0 -] which overlaps excluded region [chrY 27167859 27206241 BSR/Beta 1000 .] chr1 feature count: 2687 chr2 feature count: 1715 chr3 feature count: 1490 chr4 feature count: 1004 chr5 feature count: 1132 chr6 feature count: 1368 chr7 feature count: 1169 chr8 feature count: 913 chr9 feature count: 1025 chr10 feature count: 1039 chr11 feature count: 1642 chr12 feature count: 1350 chr13 feature count: 433 chr14 feature count: 785 chr15 feature count: 812 chr16 feature count: 1106 chr17 feature count: 1528 chr18 feature count: 398 chr19 feature count: 1785 chr20 feature count: 694 chr21 feature count: 321 chr22 feature count: 593 Loaded 24989 TSS in 3.89919 seconds. (6408.76 TSS/second). Collecting metrics from test.bam. Logging problematic reads to SRR891275.problems. Loading peaks for read group SRR891275 from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 38.6364 seconds. (964.789 peaks/second). Logging problematic reads to SRR891278.problems. Loading peaks for read group SRR891278 from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 38.421 seconds. (970.198 peaks/second). New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 53 from [SRR891275.421 1187 chr1 569924 15 50M = 569927 53 TGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACC CCCFFFFFGHHHHIGIJIJIEHIGIIIJJGIJJJJGGGJJJJJGIIJJFI XA:Z:chrM,+9376,50M,1; MD:Z:50 NM:i:0 AS:i:50 XS:i:47 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 67 from [SRR891275.1617 99 chr1 2059335 60 50M = 2059352 67 CACCTTAGCTCTGGACACGAATTTGCGGTCATTGCTGTTCTTGTGTCTCT ???DB?D8C:CD42C<<*?DB<9?BBBD?9DD4 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 112 from [SRR891275.176 99 chr1 2419720 60 50M = 2419782 112 ATCCCTGGGACTGTAGGTGGGAAGGGCATTGCAAGGCACAGGGGCGGGGA @BCFFDEDDHHHHHIJICGHI=GHIGIJJJJJIJIJIGHFHIJBHHDB87 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 216 from [SRR891275.1770 163 chr1 18154381 60 50M = 18154547 216 CAACTGTTTTGCTTACTCTGACTAATACAGAGAAGGGAGCCACAATATAC C@CFFFDFGHHHHJJJJJJJJJJJJJIEIIHIJJJIGIJIJJJCHHIJJJ MD:Z:50 NM:i:0 AS:i:50 XS:i:21 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH=... 5: 439 (84.423%) 10: 439 (84.423%) 15: 438 (84.231%) 20: 436 (83.846%) 25: 435 (83.654%) 30: 420 (80.769%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 23 (11.500% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (1.000% of all high quality autosomal alignments) Top 10 peaks: 20 (10.000% of all high quality autosomal alignments) Top 100 peaks: 23 (11.500% of all high quality autosomal alignments) Top 1000 peaks: 23 (11.500% of all high quality autosomal alignments) Top 10,000 peaks: 23 (11.500% of all high quality autosomal alignments) Read Group ========== ID: SRR891278 Library: SRR891278 Sample: GSM1155967 Description: a library of brutal tests? Sequencing center: Sequencing date: Sequencing platform: ILLUMINA Platform model: Platform unit: Flow order: Key sequence: Predicted median insert size: Programs: Metrics ------- Read Mapping Metrics -------------------- Total reads: 520 Total problems: 90 (17.308%) Properly paired and mapped reads: 430 (82.692%) Secondary reads: 10 (1.923%) Supplementary reads: 0 (0.000%) Duplicate reads: 158 (30.385% of all reads) Quality Indicators ------------------ Short to mononucleosomal ratio: 2.357 High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 200 as a percentage of autosomal reads: 91.743% as a percentage of all reads: 38.462% TSS enrichment: 3.687 Paired Read Metrics ------------------- Paired reads: 520 (100.000%) Paired and mapped reads: 440 (84.615%) FR reads: 430 (82.692308%) First of pair: 259 (49.808%) Second of pair: 261 (50.192%) Forward reads: 261 (50.192%) Reverse reads: 259 (49.808%) Forward mate reads: 260 (50.000%) Reverse mate reads: 260 (50.000%) Unmapped Read Metrics --------------------- Unmapped reads: 8 (1.538%) Unmapped mate reads: 4 (0.769%) Reads not passing quality controls: 0 (0.000%) Unpaired reads: 0 (0.000%) Reads with zero mapping quality: 49 (9.423%) Aberrant Mapping Metrics ------------------------ RF reads: 6 (1.153846%) FF reads: 4 (0.769231%) RR reads: 9 (1.730769%) Reads that paired and mapped but... on different chromosomes: 8 (1.538%) probably too far from their mates: 2 (0.385%) (longest proper fragment seems to be 649) just not properly: 0 (0.000%) Autosomal/Mitochondrial Metrics ------------------------------- Total autosomal reads: 218 (41.923% of all reads) Total mitochondrial reads: 192 (36.923% of all reads) Duplicate autosomal reads: 17 (7.798% of all autosomal reads) Duplicate mitochondrial reads: 92 (47.917% of all mitochondrial reads) Mapping Quality --------------- Mean MAPQ: 48.044 Median MAPQ: 60.000 Reads with MAPQ >=... 5: 449 (86.346%) 10: 445 (85.577%) 15: 443 (85.192%) 20: 442 (85.000%) 25: 442 (85.000%) 30: 417 (80.192%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 92 (46.000% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (1.000% of all high quality autosomal alignments) Top 10 peaks: 20 (10.000% of all high quality autosomal alignments) Top 100 peaks: 92 (46.000% of all high quality autosomal alignments) Top 1000 peaks: 92 (46.000% of all high quality autosomal alignments) Top 10,000 peaks: 92 (46.000% of all high quality autosomal alignments) [E::hts_open_format] Failed to open file "missing_alignment_file.bam" : No such file or directory Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Collecting metrics from test.bam. Logging problematic reads to Test collector.problems. Loading peaks for read group Test collector from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000.000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000.000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000.000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000.000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000.000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000.000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000.000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000.000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000.000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000.000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000.000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000.000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000.000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000.000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000.000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000.000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000.000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000.000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000.000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000.000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000.000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000.000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000.000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000.000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000.000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000.000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000.000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000.000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000.000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000.000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000.000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000.000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000.000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000.000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000.000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000.000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000.000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000.000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000.000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000.000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000.000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000.000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000.000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000.000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000.000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000.000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000.000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000.000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000.000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000.000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000.000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000.000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000.000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000.000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000.000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000.000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000.000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000.000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000.000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000.000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000.000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 39.159 seconds. (951.921 peaks/second). New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH=... 5: 888 (85.385%) 10: 884 (85.000%) 15: 881 (84.712%) 20: 878 (84.423%) 25: 877 (84.327%) 30: 837 (80.481%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 115 (28.750% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (0.500% of all high quality autosomal alignments) Top 10 peaks: 20 (5.000% of all high quality autosomal alignments) Top 100 peaks: 115 (28.750% of all high quality autosomal alignments) Top 1000 peaks: 115 (28.750% of all high quality autosomal alignments) Top 10,000 peaks: 115 (28.750% of all high quality autosomal alignments) Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Collecting metrics from test.bam. Logging problematic reads to Test collector.problems. Loading peaks for read group Test collector from notthere.peaks.gz. Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Loading TSS file 'notthere.bed.gz'. =============================================================================== All tests passed (241 assertions in 54 test cases) make[1]: Leaving directory '/build/reproducible-path/ataqv-1.3.1+ds' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ataqv-1.3.1+ds' dh_auto_install -- prefix=/usr make -j3 install DESTDIR=/build/reproducible-path/ataqv-1.3.1\+ds/debian/ataqv AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr make[2]: Entering directory '/build/reproducible-path/ataqv-1.3.1+ds' Installing to /usr install -d -m 0755 /build/reproducible-path/ataqv-1.3.1+ds/debian/ataqv/usr/bin install -d -m 0755 /build/reproducible-path/ataqv-1.3.1+ds/debian/ataqv/usr/bin install -d -m 0755 /build/reproducible-path/ataqv-1.3.1+ds/debian/ataqv/usr/share/ataqv/web install -m 0755 build/ataqv /build/reproducible-path/ataqv-1.3.1+ds/debian/ataqv/usr/bin for f in src/scripts/make_ataqv_pipeline src/scripts/mkarv src/scripts/run_ataqv_example src/scripts/srvarv; do sed -e 's/{{VERSION}}/1.3.1/g' $f > build/$(basename $f); install -m 0755 build/$(basename $f) /build/reproducible-path/ataqv-1.3.1+ds/debian/ataqv/usr/bin; done cp -a src/web/* /build/reproducible-path/ataqv-1.3.1+ds/debian/ataqv/usr/share/ataqv/web find /build/reproducible-path/ataqv-1.3.1+ds/debian/ataqv/usr/share/ataqv/web -type d -exec chmod 755 {} \; find /build/reproducible-path/ataqv-1.3.1+ds/debian/ataqv/usr/share/ataqv/web -type f -exec chmod 644 {} \; make[2]: Leaving directory '/build/reproducible-path/ataqv-1.3.1+ds' make[1]: Leaving directory '/build/reproducible-path/ataqv-1.3.1+ds' dh_install dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/ataqv-1.3.1+ds' help2man --no-info --name="QC metrics for ATAC-seq data" build/ataqv > debian/ataqv.1 help2man --no-info --name="Turns ataqv results into a web app" src/scripts/mkarv > debian/mkarv.1 help2man --no-info --name="serve an instance of the ataqv web results viewer" --version-string 1.3.1+ds src/scripts/srvarv > debian/srvarv.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/ataqv-1.3.1+ds' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/ataqv/usr/bin/ataqv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ataqv/usr/lib/ataqv/run_ataqv_tests contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ataqv-dbgsym' in '../ataqv-dbgsym_1.3.1+ds-2_armhf.deb'. dpkg-deb: building package 'ataqv' in '../ataqv_1.3.1+ds-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../ataqv_1.3.1+ds-2_armhf.buildinfo dpkg-genchanges --build=binary -O../ataqv_1.3.1+ds-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19526 and its subdirectories I: Current time: Mon Jan 13 01:45:26 -12 2025 I: pbuilder-time-stamp: 1736775926 Mon Jan 13 13:45:57 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Mon Jan 13 13:45:57 UTC 2025 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Mon Jan 13 13:52:57 UTC 2025 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Mon Jan 13 13:53:00 UTC 2025 I: ataqv_1.3.1+ds-2_armhf.changes: Format: 1.8 Date: Thu, 14 Dec 2023 22:46:56 +0700 Source: ataqv Binary: ataqv ataqv-dbgsym Architecture: armhf Version: 1.3.1+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: ataqv - ATAC-seq QC and visualization Closes: 1044021 1049553 Changes: ataqv (1.3.1+ds-2) unstable; urgency=medium . * Team upload. * d/clean: Clean files copied during configure (Closes: #1044021, #1049553) Checksums-Sha1: ddca2237fc4e1ad1a36f8d30f69874277dc2c9b2 7021792 ataqv-dbgsym_1.3.1+ds-2_armhf.deb 5cfac5ed508432661b8ea88ab6e3b266b386851f 9837 ataqv_1.3.1+ds-2_armhf.buildinfo cd6e1ab79cbe51cd1859eb5e98e488ae44cf5d14 3326204 ataqv_1.3.1+ds-2_armhf.deb Checksums-Sha256: 3ebe4908e52f72c2a6c9d72effb258488a543877446c101391b94c504e4432e2 7021792 ataqv-dbgsym_1.3.1+ds-2_armhf.deb 959afe788e6d5bc7542fef11e0cd8666d18fbf658f284f7154be23f1d937ae81 9837 ataqv_1.3.1+ds-2_armhf.buildinfo 01114056ccc15dc3237521c0a3c7111339852d831c8c50b6d355ef1864129245 3326204 ataqv_1.3.1+ds-2_armhf.deb Files: 6048200c49df109e6ef82d93a6b16829 7021792 debug optional ataqv-dbgsym_1.3.1+ds-2_armhf.deb e9b8541d68c82cf9cc115873e7a26282 9837 science optional ataqv_1.3.1+ds-2_armhf.buildinfo 347d27be4b01b8167d9d446afe61fd13 3326204 science optional ataqv_1.3.1+ds-2_armhf.deb Mon Jan 13 13:53:01 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_16-12397.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.d3cB33Dl/ataqv_1.3.1+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.d3cB33Dl/ataqv_1.3.1+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.d3cB33Dl/ataqv_1.3.1+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.d3cB33Dl/b1/ataqv_1.3.1+ds-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.d3cB33Dl/b2/ataqv_1.3.1+ds-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.422s) 0.422s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.101s) 0.101s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 754ms CPU time consumed: 755ms Mon Jan 13 13:53:02 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Mon Jan 13 13:53:02 UTC 2025 I: ataqv from trixie built successfully and reproducibly on armhf. Mon Jan 13 13:53:03 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Jan 13 13:53:03 UTC 2025 I: Submitting 12K b1/ataqv_1.3.1+ds-2_armhf.buildinfo.asc Mon Jan 13 13:53:04 UTC 2025 I: Submitting 12K b2/ataqv_1.3.1+ds-2_armhf.buildinfo.asc Mon Jan 13 13:53:05 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 13 13:53:05 UTC 2025 I: Done submitting .buildinfo files. Mon Jan 13 13:53:05 UTC 2025 I: Removing signed ataqv_1.3.1+ds-2_armhf.buildinfo.asc files: removed './b1/ataqv_1.3.1+ds-2_armhf.buildinfo.asc' removed './b2/ataqv_1.3.1+ds-2_armhf.buildinfo.asc'