Thu Jan 16 19:51:24 UTC 2025 I: starting to build autodock-vina/trixie/armhf on jenkins on '2025-01-16 19:51' Thu Jan 16 19:51:24 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_14/9157/console.log Thu Jan 16 19:51:24 UTC 2025 I: Downloading source for trixie/autodock-vina=1.2.5-2 --2025-01-16 19:51:24-- http://deb.debian.org/debian/pool/main/a/autodock-vina/autodock-vina_1.2.5-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2238 (2.2K) [text/prs.lines.tag] Saving to: ‘autodock-vina_1.2.5-2.dsc’ 0K .. 100% 356M=0s 2025-01-16 19:51:24 (356 MB/s) - ‘autodock-vina_1.2.5-2.dsc’ saved [2238/2238] Thu Jan 16 19:51:24 UTC 2025 I: autodock-vina_1.2.5-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: autodock-vina Binary: autodock-vina Architecture: any Version: 1.2.5-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Michael Banck , Andreas Tille Homepage: https://vina.scripps.edu Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/autodock-vina Vcs-Git: https://salsa.debian.org/med-team/autodock-vina.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-all-dev, debhelper Package-List: autodock-vina deb science optional arch=any Checksums-Sha1: 4b3c5f38fb046dd57f7ebcd56845ac66edabea2d 24158966 autodock-vina_1.2.5.orig.tar.gz 7ce72d1ed61f7b5a9ce1a66b751ade5abd1907de 37528 autodock-vina_1.2.5-2.debian.tar.xz Checksums-Sha256: 38aec306bff0e47522ca8f581095ace9303ae98f6a64031495a9ff1e4b2ff712 24158966 autodock-vina_1.2.5.orig.tar.gz c0bc32672680ba1b4d0176c0bf98e17daeaeda68860dcd18693879be94228d2e 37528 autodock-vina_1.2.5-2.debian.tar.xz Files: 115f334595e0e5c98e9a5cb14e7cff90 24158966 autodock-vina_1.2.5.orig.tar.gz df2ab21272d29224a3eed9000b6aa288 37528 autodock-vina_1.2.5-2.debian.tar.xz Dgit: f2eda36741bc3a9803b7eca08ea72d36c3200f5f debian archive/debian/1.2.5-2 https://git.dgit.debian.org/autodock-vina -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWAUggUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp5kw//YpOykjm1dkDnTtbDYvZvkz6of23B pzvEq2jRwqlDVlCrN1J7ru8ngPYlv0sH8uo8LLRPvUaA03IEzXCu5rhtojcsiq+t GzV4emH5ehImkRpJ3Xi/NDIXMn/SK7FBVs5xVH8fmIrmwfB5rPkKZb5jmIzDmpKU 1hjyR+y94J04QjOgeVs3HLnv0wO2aPUNvxOsLmNN9knETs039LzZ7R379qKCP3Hy 3SiPZKm9cZ0tN3f9EIWzQJHCdnmKgmioRldmDeHr+YrQmxMCSLQ5MEORdvnXyq+t 5yHwUw0HWpQPxDFB/HWVmuXxwiOIMN7X/PECasCF5UJsRqMMyD2mZAHMTaJ6IqcL BolNkeIbwpRR6E1kewIwhrsYxnZtAsULok0aqgf0hj5yyvYEE4U1SuoabjcZ/ykz F9GfjZksRB++cDmJzsIYrVaY8K+5cz0V3MU4o3Qd10ub1A/XHFcNrAlbni4pHkCt Sd9lezasexQF8mVnIUuLHmSOzmeTRnihuaEGr4998+BKcXCKtUuqn2whAOs35MOa ZMXLcqX3/slt5xXm9sOWwJsos/7tfQOCfsubQgKFodaDjzMi29MxnR6gDp0Kg3/j yzy2vwXWSfH1y7fHz8LJay6m2tda3P7BZ4ee4itUdvbM9WHnBL+uN+EBP0tBQBHj 38phzYfCduYHaZQ= =8Ews -----END PGP SIGNATURE----- Thu Jan 16 19:51:24 UTC 2025 I: Checking whether the package is not for us Thu Jan 16 19:51:24 UTC 2025 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Thu Jan 16 19:51:24 UTC 2025 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Thu Jan 16 19:58:32 UTC 2025 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 16 07:51:38 -12 2025 I: pbuilder-time-stamp: 1737057098 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [autodock-vina_1.2.5-2.dsc] I: copying [./autodock-vina_1.2.5.orig.tar.gz] I: copying [./autodock-vina_1.2.5-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./autodock-vina_1.2.5-2.dsc: unsupported subcommand dpkg-source: info: extracting autodock-vina in autodock-vina-1.2.5 dpkg-source: info: unpacking autodock-vina_1.2.5.orig.tar.gz dpkg-source: info: unpacking autodock-vina_1.2.5-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_static.patch dpkg-source: info: applying do_not_link_against_unneeded_libs.patch dpkg-source: info: applying annoying_static_removed_was_in_for_a_reason_questionmark.patch dpkg-source: info: applying boost1.83.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21347/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='9dd2d8d91f774f37b09a5a6ff40f03d3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='21347' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0MOvZIl6/pbuilderrc_s4qL --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0MOvZIl6/b1 --logfile b1/build.log autodock-vina_1.2.5-2.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-30-armmp-lpae #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/21347/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-all-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19566 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-all-dev; however: Package libboost-all-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} groff-base{a} hwloc-nox{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-container-dev{a} libboost-container1.83-dev{a} libboost-container1.83.0{a} libboost-context-dev{a} libboost-context1.83-dev{a} libboost-context1.83.0{a} libboost-coroutine-dev{a} libboost-coroutine1.83-dev{a} libboost-coroutine1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.83-dev{a} libboost-fiber-dev{a} libboost-fiber1.83-dev{a} libboost-fiber1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.83-dev{a} libboost-graph-parallel1.83.0{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-json-dev{a} libboost-json1.83-dev{a} libboost-json1.83.0{a} libboost-locale-dev{a} libboost-locale1.83-dev{a} libboost-locale1.83.0{a} libboost-log-dev{a} libboost-log1.83-dev{a} libboost-log1.83.0{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.83-dev{a} libboost-mpi-python1.83.0{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-nowide-dev{a} libboost-nowide1.83-dev{a} libboost-nowide1.83.0{a} libboost-numpy-dev{a} libboost-numpy1.83-dev{a} libboost-numpy1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-random-dev{a} libboost-random1.83-dev{a} libboost-random1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.83-dev{a} libboost-stacktrace1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.83-dev{a} libboost-type-erasure1.83.0{a} libboost-url-dev{a} libboost-url1.83-dev{a} libboost-url1.83.0{a} libboost-wave-dev{a} libboost-wave1.83-dev{a} libboost-wave1.83.0{a} libboost1.83-dev{a} libboost1.83-tools-dev{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc15{a} libicu-dev{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmpich-dev{a} libmpich12{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libslurm42t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} mpich{a} netbase{a} po-debconf{a} python3{a} python3-dev{a} python3-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libhwloc-plugins libmail-sendmail-perl lynx wget 0 packages upgraded, 184 newly installed, 0 to remove and 0 not upgraded. Need to get 91.1 MB of archives. After unpacking 558 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.8-3 [802 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.8-3 [1794 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 13 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-6 [146 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1824 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.8-3 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.8-1 [9792 B] Get: 23 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-4 [196 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-13 [84.7 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-4 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.23 [90.6 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-4 [1489 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf debhelper all 13.23 [919 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-12 [263 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libgfortran-14-dev armhf 14.2.0-12 [317 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-12 [8720 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf gfortran-14 armhf 14.2.0-12 [13.4 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libhwloc15 armhf 2.11.2-1 [134 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf hwloc-nox armhf 2.11.2-1 [201 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-6 [189 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-4 [10.6 MB] Get: 62 http://deb.debian.org/debian trixie/main armhf libboost-atomic1.83.0 armhf 1.83.0-4 [233 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libboost-atomic1.83-dev armhf 1.83.0-4 [234 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libboost-atomic-dev armhf 1.83.0.2+b2 [3896 B] Get: 65 http://deb.debian.org/debian trixie/main armhf libboost-chrono1.83.0t64 armhf 1.83.0-4 [238 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libboost-chrono1.83-dev armhf 1.83.0-4 [244 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libboost-chrono-dev armhf 1.83.0.2+b2 [4212 B] Get: 68 http://deb.debian.org/debian trixie/main armhf libboost-container1.83.0 armhf 1.83.0-4 [255 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libboost-container1.83-dev armhf 1.83.0-4 [261 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libboost-container-dev armhf 1.83.0.2+b2 [4060 B] Get: 71 http://deb.debian.org/debian trixie/main armhf libboost-date-time1.83.0 armhf 1.83.0-4 [230 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libboost-serialization1.83.0 armhf 1.83.0-4 [317 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libboost-serialization1.83-dev armhf 1.83.0-4 [385 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libboost-date-time1.83-dev armhf 1.83.0-4 [239 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libboost-system1.83.0 armhf 1.83.0-4 [230 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libboost-system1.83-dev armhf 1.83.0-4 [232 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libboost-thread1.83.0 armhf 1.83.0-4 [262 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libboost-thread1.83-dev armhf 1.83.0-4 [276 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libboost-context1.83.0 armhf 1.83.0-4 [231 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libboost-context1.83-dev armhf 1.83.0-4 [233 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libboost-context-dev armhf 1.83.0.2+b2 [3792 B] Get: 82 http://deb.debian.org/debian trixie/main armhf libboost-coroutine1.83.0 armhf 1.83.0-4 [233 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libboost-coroutine1.83-dev armhf 1.83.0-4 [235 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libboost-coroutine-dev armhf 1.83.0.2+b2 [3860 B] Get: 85 http://deb.debian.org/debian trixie/main armhf libboost-date-time-dev armhf 1.83.0.2+b2 [3584 B] Get: 86 http://deb.debian.org/debian trixie/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 87 http://deb.debian.org/debian trixie/main armhf libboost-exception1.83-dev armhf 1.83.0-4 [230 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libboost-exception-dev armhf 1.83.0.2+b2 [3576 B] Get: 89 http://deb.debian.org/debian trixie/main armhf libboost-filesystem1.83.0 armhf 1.83.0-4 [271 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libboost-filesystem1.83-dev armhf 1.83.0-4 [286 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libboost-fiber1.83.0 armhf 1.83.0-4 [251 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libboost-fiber1.83-dev armhf 1.83.0-4 [265 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libboost-fiber-dev armhf 1.83.0.2+b2 [4016 B] Get: 94 http://deb.debian.org/debian trixie/main armhf libboost-filesystem-dev armhf 1.83.0.2+b2 [3616 B] Get: 95 http://deb.debian.org/debian trixie/main armhf libboost-graph1.83.0 armhf 1.83.0-4 [335 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-4 [308 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-6 [10.1 MB] Get: 98 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-4 [337 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libboost-test1.83.0 armhf 1.83.0-4 [431 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libboost-test1.83-dev armhf 1.83.0-4 [534 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libboost-graph1.83-dev armhf 1.83.0-4 [378 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libboost-graph-dev armhf 1.83.0.2+b2 [3688 B] Get: 103 http://deb.debian.org/debian trixie/main armhf libmpich12 armhf 4.2.1-5 [1417 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libboost-mpi1.83.0 armhf 1.83.0-4 [264 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libboost-graph-parallel1.83.0 armhf 1.83.0-4 [272 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libboost-graph-parallel1.83-dev armhf 1.83.0-4 [284 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libboost-graph-parallel-dev armhf 1.83.0.2+b2 [3720 B] Get: 108 http://deb.debian.org/debian trixie/main armhf libboost-iostreams1.83-dev armhf 1.83.0-4 [261 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libboost-iostreams-dev armhf 1.83.0.2+b2 [3568 B] Get: 110 http://deb.debian.org/debian trixie/main armhf libboost-json1.83.0 armhf 1.83.0-4 [352 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libboost-json1.83-dev armhf 1.83.0-4 [373 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libboost-json-dev armhf 1.83.0.2+b2 [3700 B] Get: 113 http://deb.debian.org/debian trixie/main armhf libboost-locale1.83.0 armhf 1.83.0-4 [440 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libboost-locale1.83-dev armhf 1.83.0-4 [567 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libboost-locale-dev armhf 1.83.0.2+b2 [3912 B] Get: 116 http://deb.debian.org/debian trixie/main armhf libboost-log1.83.0 armhf 1.83.0-4 [626 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libboost-log1.83-dev armhf 1.83.0-4 [856 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libboost-log-dev armhf 1.83.0.2+b2 [3788 B] Get: 119 http://deb.debian.org/debian trixie/main armhf libboost-math1.83.0 armhf 1.83.0-4 [328 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libboost-math1.83-dev armhf 1.83.0-4 [346 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libboost-math-dev armhf 1.83.0.2+b2 [3788 B] Get: 122 http://deb.debian.org/debian trixie/main armhf libnuma1 armhf 2.0.18-1+b1 [18.9 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libnuma-dev armhf 2.0.18-1+b1 [34.6 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libltdl7 armhf 2.5.4-2 [412 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libltdl-dev armhf 2.5.4-2 [163 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libhwloc-dev armhf 2.11.2-1 [226 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libslurm42t64 armhf 24.11.0-2 [693 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf mpich armhf 4.2.1-5 [203 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libmpich-dev armhf 4.2.1-5 [2269 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf mpi-default-dev armhf 1.18 [3372 B] Get: 131 http://deb.debian.org/debian trixie/main armhf libboost-mpi1.83-dev armhf 1.83.0-4 [289 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libboost-mpi-dev armhf 1.83.0.2+b2 [3668 B] Get: 133 http://deb.debian.org/debian trixie/main armhf libboost-python1.83.0 armhf 1.83.0-4 [305 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf mpi-default-bin armhf 1.18 [2576 B] Get: 135 http://deb.debian.org/debian trixie/main armhf libboost-mpi-python1.83.0 armhf 1.83.0-4 [339 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf libboost-mpi-python1.83-dev armhf 1.83.0-4 [237 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libboost-mpi-python-dev armhf 1.83.0.2+b2 [3700 B] Get: 138 http://deb.debian.org/debian trixie/main armhf libboost-nowide1.83.0 armhf 1.83.0-4 [233 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf libboost-nowide1.83-dev armhf 1.83.0-4 [235 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf libboost-nowide-dev armhf 1.83.0.2+b2 [3660 B] Get: 141 http://deb.debian.org/debian trixie/main armhf libboost-numpy1.83.0 armhf 1.83.0-4 [240 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf libboost-numpy1.83-dev armhf 1.83.0-4 [245 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf libboost-numpy-dev armhf 1.83.0.2+b2 [3636 B] Get: 144 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83.0 armhf 1.83.0-4 [327 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83-dev armhf 1.83.0-4 [370 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf libboost-program-options-dev armhf 1.83.0.2+b2 [3604 B] Get: 147 http://deb.debian.org/debian trixie/main armhf libpython3.12t64 armhf 3.12.8-3 [1849 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.4-1 [140 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf libpython3.12-dev armhf 3.12.8-3 [3812 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.12.8-1 [10.1 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf python3.12-dev armhf 3.12.8-3 [506 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf python3-dev armhf 3.12.8-1 [26.1 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf libboost-python1.83-dev armhf 1.83.0-4 [322 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf libboost-python-dev armhf 1.83.0.2+b2 [3884 B] Get: 159 http://deb.debian.org/debian trixie/main armhf libboost-random1.83.0 armhf 1.83.0-4 [236 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf libboost-random1.83-dev armhf 1.83.0-4 [240 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf libboost-random-dev armhf 1.83.0.2+b2 [3584 B] Get: 162 http://deb.debian.org/debian trixie/main armhf libboost-regex-dev armhf 1.83.0.2+b2 [3856 B] Get: 163 http://deb.debian.org/debian trixie/main armhf libboost-serialization-dev armhf 1.83.0.2+b2 [3816 B] Get: 164 http://deb.debian.org/debian trixie/main armhf libboost-stacktrace1.83.0 armhf 1.83.0-4 [273 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf libboost-stacktrace1.83-dev armhf 1.83.0-4 [243 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf libboost-stacktrace-dev armhf 1.83.0.2+b2 [3580 B] Get: 167 http://deb.debian.org/debian trixie/main armhf libboost-system-dev armhf 1.83.0.2+b2 [3724 B] Get: 168 http://deb.debian.org/debian trixie/main armhf libboost-test-dev armhf 1.83.0.2+b2 [3620 B] Get: 169 http://deb.debian.org/debian trixie/main armhf libboost-thread-dev armhf 1.83.0.2+b2 [3612 B] Get: 170 http://deb.debian.org/debian trixie/main armhf libboost-timer1.83.0 armhf 1.83.0-4 [234 kB] Get: 171 http://deb.debian.org/debian trixie/main armhf libboost-timer1.83-dev armhf 1.83.0-4 [236 kB] Get: 172 http://deb.debian.org/debian trixie/main armhf libboost-timer-dev armhf 1.83.0.2+b2 [3708 B] Get: 173 http://deb.debian.org/debian trixie/main armhf libboost1.83-tools-dev armhf 1.83.0-4 [1366 kB] Get: 174 http://deb.debian.org/debian trixie/main armhf libboost-tools-dev armhf 1.83.0.2+b2 [3764 B] Get: 175 http://deb.debian.org/debian trixie/main armhf libboost-type-erasure1.83.0 armhf 1.83.0-4 [244 kB] Get: 176 http://deb.debian.org/debian trixie/main armhf libboost-type-erasure1.83-dev armhf 1.83.0-4 [250 kB] Get: 177 http://deb.debian.org/debian trixie/main armhf libboost-type-erasure-dev armhf 1.83.0.2+b2 [3680 B] Get: 178 http://deb.debian.org/debian trixie/main armhf libboost-url1.83.0 armhf 1.83.0-4 [320 kB] Get: 179 http://deb.debian.org/debian trixie/main armhf libboost-url1.83-dev armhf 1.83.0-4 [387 kB] Get: 180 http://deb.debian.org/debian trixie/main armhf libboost-url-dev armhf 1.83.0.2+b2 [3720 B] Get: 181 http://deb.debian.org/debian trixie/main armhf libboost-wave1.83.0 armhf 1.83.0-4 [412 kB] Get: 182 http://deb.debian.org/debian trixie/main armhf libboost-wave1.83-dev armhf 1.83.0-4 [500 kB] Get: 183 http://deb.debian.org/debian trixie/main armhf libboost-wave-dev armhf 1.83.0.2+b2 [3616 B] Get: 184 http://deb.debian.org/debian trixie/main armhf libboost-all-dev armhf 1.83.0.2+b2 [3932 B] Fetched 91.1 MB in 9s (10.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19566 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.8-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_armhf.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:armhf (3.12.8-3) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19886 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_armhf.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libffi8:armhf. Preparing to unpack .../04-libffi8_3.4.6-1_armhf.deb ... Unpacking libffi8:armhf (3.4.6-1) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../05-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../06-libcom-err2_1.47.2-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.2-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../07-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../08-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../09-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../15-libreadline8t64_8.2-6_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-3_armhf.deb ... Unpacking python3.12 (3.12.8-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/autodock-vina-1.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../autodock-vina_1.2.5-2_source.changes dpkg-buildpackage: info: source package autodock-vina dpkg-buildpackage: info: source version 1.2.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/autodock-vina-1.2.5' dh_clean rm -f build/linux/release/*.o build/linux/release/vina* make[1]: Leaving directory '/build/reproducible-path/autodock-vina-1.2.5' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/autodock-vina-1.2.5' /usr/bin/make BASE=/usr -C build/linux/release CLFAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" LDFLAGS="-Wl,-z,relro -Wl,-z,now --lto -g" make[2]: Entering directory '/build/reproducible-path/autodock-vina-1.2.5/build/linux/release' /bin/sh: 1: git: not found g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/parse_pdbqt.h:27, from ../../../src/lib/vina.h:42, from ../../../src/main/main.cpp:30: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o ad4cache.o -c ../../../src/lib/ad4cache.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/ad4cache.h:37, from ../../../src/lib/ad4cache.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o cache.o -c ../../../src/lib/cache.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/cache.h:37, from ../../../src/lib/cache.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o non_cache.o -c ../../../src/lib/non_cache.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/szv_grid.h:26, from ../../../src/lib/non_cache.h:27, from ../../../src/lib/non_cache.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o conf_independent.o -c ../../../src/lib/conf_independent.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/conf_independent.cpp:24: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o coords.o -c ../../../src/lib/coords.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/coords.h:26, from ../../../src/lib/coords.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o grid.o -c ../../../src/lib/grid.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o szv_grid.o -c ../../../src/lib/szv_grid.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/szv_grid.h:26, from ../../../src/lib/szv_grid.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o model.o -c ../../../src/lib/model.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/model.cpp:25: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o monte_carlo.o -c ../../../src/lib/monte_carlo.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/monte_carlo.h:27, from ../../../src/lib/monte_carlo.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o mutate.o -c ../../../src/lib/mutate.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/mutate.h:26, from ../../../src/lib/mutate.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o parallel_mc.o -c ../../../src/lib/parallel_mc.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/monte_carlo.h:27, from ../../../src/lib/parallel_mc.h:26, from ../../../src/lib/parallel_mc.cpp:24: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o parse_pdbqt.o -c ../../../src/lib/parse_pdbqt.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/parse_pdbqt.cpp:34: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o quasi_newton.o -c ../../../src/lib/quasi_newton.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/quasi_newton.h:26, from ../../../src/lib/quasi_newton.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o quaternion.o -c ../../../src/lib/quaternion.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/quaternion.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o random.o -c ../../../src/lib/random.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o utils.o -c ../../../src/lib/utils.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o vina.o -c ../../../src/lib/vina.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/boost/math/quaternion.hpp:14, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/parse_pdbqt.h:27, from ../../../src/lib/vina.h:42, from ../../../src/lib/vina.cpp:23: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -Wl,-z,relro -Wl,-z,now --lto -g -o vina main.o ad4cache.o cache.o non_cache.o conf_independent.o coords.o grid.o szv_grid.o model.o monte_carlo.o mutate.o parallel_mc.o parse_pdbqt.o quasi_newton.o quaternion.o random.o utils.o vina.o -l boost_system -l boost_thread -l boost_filesystem -l boost_program_options lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o split.o -c ../../../src/split/split.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -Wl,-z,relro -Wl,-z,now --lto -g -o vina_split split.o -l boost_system -l boost_thread -l boost_filesystem -l boost_program_options make[2]: Leaving directory '/build/reproducible-path/autodock-vina-1.2.5/build/linux/release' make[1]: Leaving directory '/build/reproducible-path/autodock-vina-1.2.5' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/autodock-vina/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/autodock-vina/usr/bin/vina contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'autodock-vina' in '../autodock-vina_1.2.5-2_armhf.deb'. dpkg-deb: building package 'autodock-vina-dbgsym' in '../autodock-vina-dbgsym_1.2.5-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../autodock-vina_1.2.5-2_armhf.buildinfo dpkg-genchanges --build=binary -O../autodock-vina_1.2.5-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21347 and its subdirectories I: Current time: Thu Jan 16 07:58:21 -12 2025 I: pbuilder-time-stamp: 1737057501 Thu Jan 16 19:58:34 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ff64a-armhf-rb.debian.net. Thu Jan 16 19:58:34 UTC 2025 I: Preparing to do remote build '2' on ff64a-armhf-rb.debian.net. Thu Jan 16 20:11:58 UTC 2025 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. Thu Jan 16 20:12:01 UTC 2025 I: autodock-vina_1.2.5-2_armhf.changes: Format: 1.8 Date: Mon, 18 Dec 2023 15:02:05 +0100 Source: autodock-vina Binary: autodock-vina autodock-vina-dbgsym Architecture: armhf Version: 1.2.5-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: autodock-vina - docking of small molecules to proteins Closes: 1056089 Changes: autodock-vina (1.2.5-2) unstable; urgency=medium . * Team upload. * boost1.83.patch: new: fix ftbfs with boost 1.83. Thanks to jalegido (Closes: #1056089) * d/t/run-unit-test: remove bashisms flagged by lintian. Checksums-Sha1: e461ab20c091e57545f8b47b9a2d7544bff957a4 3071472 autodock-vina-dbgsym_1.2.5-2_armhf.deb c17c416ad2a96add5f1022c389c25ddaf2dd4cd2 10484 autodock-vina_1.2.5-2_armhf.buildinfo f016b24723c744e352a9cf8d35e033f711796d66 240552 autodock-vina_1.2.5-2_armhf.deb Checksums-Sha256: 53a3a4b5570fa79046a46416b6a7c063e9934e144379114b14ac9050e34893df 3071472 autodock-vina-dbgsym_1.2.5-2_armhf.deb 5e7d6ef4fc97fe54d63e3392fafcae6fab076c091da09a23bf12fbd9dd4294ed 10484 autodock-vina_1.2.5-2_armhf.buildinfo bd94e5b00ec48dfad363d88f657de44b327c46efb325446be2660d621103efcb 240552 autodock-vina_1.2.5-2_armhf.deb Files: 0a2b764732035ca3ec9235dd7d33b5b7 3071472 debug optional autodock-vina-dbgsym_1.2.5-2_armhf.deb 34ea6c86cc986722ed7aae84b3374d66 10484 science optional autodock-vina_1.2.5-2_armhf.buildinfo 7f942ef266d7e4008d4700254d46bcd5 240552 science optional autodock-vina_1.2.5-2_armhf.deb Thu Jan 16 20:12:02 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_14-9157.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0MOvZIl6/autodock-vina_1.2.5-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0MOvZIl6/autodock-vina_1.2.5-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0MOvZIl6/autodock-vina_1.2.5-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0MOvZIl6/b1/autodock-vina_1.2.5-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.0MOvZIl6/b2/autodock-vina_1.2.5-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.388s) 0.388s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.052s) 0.052s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 719ms CPU time consumed: 713ms Thu Jan 16 20:12:03 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Thu Jan 16 20:12:03 UTC 2025 I: autodock-vina from trixie built successfully and reproducibly on armhf. Thu Jan 16 20:12:04 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Jan 16 20:12:04 UTC 2025 I: Submitting 12K b1/autodock-vina_1.2.5-2_armhf.buildinfo.asc Thu Jan 16 20:12:05 UTC 2025 I: Submitting 12K b2/autodock-vina_1.2.5-2_armhf.buildinfo.asc Thu Jan 16 20:12:05 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 16 20:12:05 UTC 2025 I: Done submitting .buildinfo files. Thu Jan 16 20:12:05 UTC 2025 I: Removing signed autodock-vina_1.2.5-2_armhf.buildinfo.asc files: removed './b1/autodock-vina_1.2.5-2_armhf.buildinfo.asc' removed './b2/autodock-vina_1.2.5-2_armhf.buildinfo.asc'