Thu Jan 23 08:42:23 UTC 2025 I: starting to build biosquid/trixie/armhf on jenkins on '2025-01-23 08:41' Thu Jan 23 08:42:23 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_17/13492/console.log Thu Jan 23 08:42:23 UTC 2025 I: Downloading source for trixie/biosquid=1.9g+cvs20050121-15.1 --2025-01-23 08:42:23-- http://deb.debian.org/debian/pool/main/b/biosquid/biosquid_1.9g%2bcvs20050121-15.1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2242 (2.2K) [text/prs.lines.tag] Saving to: ‘biosquid_1.9g+cvs20050121-15.1.dsc’ 0K .. 100% 279M=0s 2025-01-23 08:42:23 (279 MB/s) - ‘biosquid_1.9g+cvs20050121-15.1.dsc’ saved [2242/2242] Thu Jan 23 08:42:23 UTC 2025 I: biosquid_1.9g+cvs20050121-15.1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biosquid Binary: biosquid, libsquid1t64, libsquid-dev Architecture: any Version: 1.9g+cvs20050121-15.1 Maintainer: Debian-Med Packaging Team Uploaders: Andreas Tille Homepage: http://eddylab.org/software.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/biosquid Vcs-Git: https://salsa.debian.org/med-team/biosquid.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) Package-List: biosquid deb science optional arch=any libsquid-dev deb libdevel optional arch=any libsquid1t64 deb libs optional arch=any Checksums-Sha1: 5ff847263f38a26e8cf4e2fba0414c5fdb8c6732 304060 biosquid_1.9g+cvs20050121.orig.tar.gz 2dd4764998668cfbb45cf3227d58f060ab223b1a 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz Checksums-Sha256: b6b752bcea5ec6468b52096cdde0e792b7f5ed5fb3f477ec7ac233c54646f925 304060 biosquid_1.9g+cvs20050121.orig.tar.gz defda3f89eaba1d601f4ce38021e451af12e8e594ffb5019a8d81177091d78ef 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz Files: 75ca6e693bedb18086b9e5911f3c047a 304060 biosquid_1.9g+cvs20050121.orig.tar.gz bc18268d36cc8d35b9a73e8eec0b9343 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAmXfe8ASHHZvcmxvbkBk ZWJpYW4ub3JnAAoJEFaNMPMhshM9wTAQAL7awE2qHYNWvV5BE9cTq2QJy1TU/HOC C+3kmBu8USPsUPzOoFECFLYwlYsXUD1THDEz0oYdxt2x+txYCp9TLG4f70FAoduj 0MhseST+8AwJuG9L+2vdWjJxGlyyylPL8cIAW5itkoNkbErRGdwQvjzkxgJbyReT i6TbXdrpdCiVzEopt+xt7fKaFlOo/QTWlB0jPxXqURX0hkDZXMFrw+TwEyQtlCsF 1a8vW5fS2ClTwbtemfV0bw7Aw0VqZKQia2PDTxNDByiJvt7EB92yziqv6JMH8HJl mTL5X9i+LAdZ77WXav3pC+PYEerK3YnsWxZkJt23pwVuON8IDaLWp9EqGj49Ew6E VMnhThHlXGAHTMv/B1qe+1VZ4oXO9KQw1EXOd1fMtVymcdSc7JSKbJPdfp72bWgz R6ZMF0crHBS6ptHBV/2AfFmskUlaVXlSwhjDBZJXCnUVPKR1TBrjZQ/Myrdj+pyq Byn7+haHS0eqgJR5NIMSzu4fE9BqNob2qryRty4tiOTMSGmnjtqdZOfmU3mxGGYt kCbZQ94mwfJ3bwH0X79Vt3/yBV53+tdl434knXmdYIFwzuMwFI7PBXF7hx35vAM1 xNFWuYI/GIoKonHSYjEwS+ojvSivrbENFH8XMLB3Nhu3NsnyNEUnHkinPmSz4q/S +yVMkxpXRN9f =JOLw -----END PGP SIGNATURE----- Thu Jan 23 08:42:23 UTC 2025 I: Checking whether the package is not for us Thu Jan 23 08:42:23 UTC 2025 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Thu Jan 23 08:42:23 UTC 2025 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Thu Jan 23 08:46:53 UTC 2025 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 22 20:42:30 -12 2025 I: pbuilder-time-stamp: 1737621750 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biosquid_1.9g+cvs20050121-15.1.dsc] I: copying [./biosquid_1.9g+cvs20050121.orig.tar.gz] I: copying [./biosquid_1.9g+cvs20050121-15.1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biosquid_1.9g+cvs20050121-15.1.dsc: unsupported subcommand dpkg-source: info: extracting biosquid in biosquid-1.9g+cvs20050121 dpkg-source: info: unpacking biosquid_1.9g+cvs20050121.orig.tar.gz dpkg-source: info: unpacking biosquid_1.9g+cvs20050121-15.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying afetch.man.patch dpkg-source: info: applying alistat.man.patch dpkg-source: info: applying compstruct.man.patch dpkg-source: info: applying Makefile.in.patch dpkg-source: info: applying seqstat.man.patch dpkg-source: info: applying sfetch.man.patch dpkg-source: info: applying shuffle.man.patch dpkg-source: info: applying sindex.man.patch dpkg-source: info: applying sreformat.man.patch dpkg-source: info: applying getopt-segmentation-fault.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying perl-testsuite-inc.patch dpkg-source: info: applying automake.patch dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5216/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='1385140ae2e642ea8b09dea544faed7f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5216' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bnQXK2L0/pbuilderrc_9DN1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bnQXK2L0/b1 --logfile b1/build.log biosquid_1.9g+cvs20050121-15.1.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 6.1.0-30-armmp-lpae #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/5216/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106); however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 19.6 MB of archives. After unpacking 74.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-4 [196 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-1 [84.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-4 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.23 [90.6 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-4 [1489 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf debhelper all 13.23 [919 kB] Fetched 19.6 MB in 0s (55.3 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-4_armhf.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-1_armhf.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_armhf.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libunistring5:armhf. Preparing to unpack .../24-libunistring5_1.3-1_armhf.deb ... Unpacking libunistring5:armhf (1.3-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../25-libicu72_72.1-6_armhf.deb ... Unpacking libicu72:armhf (72.1-6) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.22.5-4_armhf.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libicu72:armhf (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.23) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:armhf (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.23) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-15.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve Langasek dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars debian/files rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1t64/ debian/libsquid-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:47: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level configure.ac:75: installing './compile' configure.ac:77: installing './config.guess' configure.ac:40: installing './missing' Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' # autoreconf && true autoconf configure.ac:47: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level dh_auto_configure -- --enable-lfs # --enable-pvm ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-lfs checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ar... /usr/bin/ar checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 4 checking size of unsigned long long... 8 checking for strtoul... yes checking for strtoull... yes checking whether fpos_t is an arithmetic datatype... no. checking for strtoull... (cached) yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for stat64... yes checking for struct stat64... no! checking size of off_t... 8 checking size of off64_t... 0 checking size of fpos_t... 16 configure: configured for optional LFS, large file support checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating libsquid.pc config.status: creating squidconf.h config.status: executing depfiles commands config.status: executing libtool commands # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ squidconf.h make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o afetch_main.o afetch_main.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c file.c: In function 'EnvFileOpen': file.c:240:26: warning: '%s' directive writing up to 1022 bytes into a region of size between 1 and 1023 [-Wformat-overflow=] 240 | sprintf(full, "%s%c%s", s, DIRSLASH, fname); | ^~ In file included from /usr/include/stdio.h:970, from file.c:21: In function 'sprintf', inlined from 'EnvFileOpen' at file.c:240:7: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 2046 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c file.c -o libsquid_la-file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-fstack-clash-protection -Wformat -Werror=format-security -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c squidcore.c -fPIC -DPIC -o .libs/libsquid_la-squidcore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-fstack-clash-protection -Wformat -Werror=format-security -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-sre_random.lo `test -f 'sre_random.c' || echo './'`sre_random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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`test -f 'ssi.c' || echo './'`ssi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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'stockholm.c' || echo './'`stockholm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-types.lo `test -f 'types.c' || echo './'`types.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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>/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-vectorops.lo `test -f 'vectorops.c' || echo './'`vectorops.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c dirichlet.c: In function 'AllocDirichlet': dirichlet.c:375:3: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 375 | strcpy(d->alphabet, alphabet); | ^ dirichlet.c:374:17: note: destination object of size [0, 2147483645] allocated by 'malloc' 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-iupac.lo `test -f 'iupac.c' || echo './'`iupac.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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'./'`revcomp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-rk.lo `test -f 'rk.c' || echo './'`rk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-seqencode.lo `test -f 'seqencode.c' || echo './'`seqencode.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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.libs/libsquid_la-shuffle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o alistat_main.o alistat_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o aligneval.o aligneval.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o cluster.o cluster.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sre_math.o sre_math.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sre_stack.o sre_stack.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o compalign_main.o compalign_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o compstruct_main.o compstruct_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o wuss.o wuss.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o revcomp_main.o revcomp_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o revcomp.o revcomp.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o shuffle.o shuffle.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o seqsplit_main.o seqsplit_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o seqstat_main.o seqstat_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sfetch_main.o sfetch_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o shuffle_main.o shuffle_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o iupac.o iupac.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sindex_main.o sindex_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sreformat_main.o sreformat_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o eps.o eps.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o translate_main.o translate_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o weight_main.o weight_main.c gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o weight.o weight.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/arm-linux-gnueabihf libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* ln -s .libs/libsquid.a dh_auto_test make -j3 check "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' (cd Testsuite; make CC="gcc" CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security") make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c sqdconfig_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c iospeed_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c rndspeed_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o sqdconfig sqdconfig_main.o -lsquid -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o iospeed iospeed_main.o -lsquid -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o rndspeed rndspeed_main.o -lsquid -lm /usr/bin/ld: iospeed_main.o: in function `main': ./Testsuite/iospeed_main.c:28:(.text.startup+0x32): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' (cd Testsuite; make check) make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' fgets(): 0.21u 0.07s 00:00:00.28 Elapsed: 00:00:01 sre_fgets(): 0.35u 0.08s 00:00:00.43 Elapsed: 00:00:00 ReadSeq(): 0.95u 0.04s 00:00:00.99 Elapsed: 00:00:01 iospeed: ok rand(): 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00 sre_random(): 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00 rndspeed: ok x-base-afetch basic tests of afetch ... ok. x-base-alistat basic tests of alistat ... ok. x-base-seqstat basic tests of seqstat ... ok. x-base-sfetch basic tests of sfetch ... ok. x-base-shuffle basic tests of shuffle ... ok. x-base-sindex basic tests of sindex ... ok. x-base-sreformat basic tests of sreformat ... ok. bug-1-sfetch-path sfetch/SSI path bug ... ok. make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -fr -- /tmp/dh-xdg-rundir-QehjiYfy cd Testsuite && make clean make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' rm -f *.o *~ Makefile.bak core iospeed rndspeed TAGS gmon.out sqdconfig make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars rm -fr -- debian/.debhelper/generated/biosquid/ debian/biosquid/ debian/tmp/ debian/.debhelper/generated/libsquid1t64/ debian/libsquid1t64/ debian/.debhelper/generated/libsquid-dev/ debian/libsquid-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) libtool: install: /usr/bin/install -c .libs/libsquid.lai /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.la libtool: install: /usr/bin/install -c .libs/libsquid.a /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.a libtool: install: chmod 644 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.a libtool: install: ranlib /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/afetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/alistat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/alistat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/compalign /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compalign libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/compstruct /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compstruct libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/revcomp /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/revcomp libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/seqsplit /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqsplit libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/seqstat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqstat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/sfetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sfetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/shuffle /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/shuffle libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/sindex /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sindex libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/sreformat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sreformat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/weight /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/weight /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/install -c -m 644 dirichlet.h rk.h sqfuncs.h gki.h msa.h sre_random.h sre_stack.h ssi.h stopwatch.h vectorops.h '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 libsquid.pc '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/stranslate dh_install install -m0755 -d debian/biosquid/usr cp --reflink=auto -a debian/tmp/usr/bin debian/biosquid/usr/ d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev squid.h usr/include/biosquid \ --movedev squidconf.h usr/include/biosquid \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/libsquid.so Library package automatic movement utility set -e install -d -m 755 debian/libsquid-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libsquid1t64/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.a debian/libsquid-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.so debian/libsquid-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.so.1 debian/libsquid1t64/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/arm-linux-gnueabihf PKGDEV=libsquid-dev PKGSHL=libsquid1t64 install -d -m 755 debian/libsquid-dev/usr/include mv debian/tmp/usr/include/biosquid debian/libsquid-dev/usr/include install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squid.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squidconf.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsquid-dev/usr/lib/arm-linux-gnueabihf/pkgconfig find debian -name "lib*.la" -delete # resolve @LICENSE@ by text in header files for HEADER in /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/include/biosquid/*.h ; do \ if grep -q '@LICENSE@' ${HEADER} ; then \ sed '/@LICENSE@/,$d' ${HEADER} > ${HEADER}_tmp ; \ sed 's/^/ * /' Licenses/gnu >> ${HEADER}_tmp ; \ sed '0,/@LICENSE@/d' ${HEADER} >> ${HEADER}_tmp ; \ mv ${HEADER}_tmp ${HEADER} ; \ fi ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installdocs install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/biosquid.README.Debian debian/biosquid/usr/share/doc/biosquid/README.Debian install -p -m0644 debian/copyright debian/biosquid/usr/share/doc/biosquid/copyright install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/copyright debian/libsquid1t64/usr/share/doc/libsquid1t64/copyright install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/README.test debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/tests/run-unit-test debian/libsquid-dev/usr/share/doc/libsquid-dev chmod -R u\+rw,go=rX debian/libsquid-dev/usr/share/doc install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/.debhelper/generated/libsquid1t64/dh_installchangelogs.dch.trimmed debian/libsquid1t64/usr/share/doc/libsquid1t64/changelog.Debian install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -p -m0644 debian/.debhelper/generated/libsquid-dev/dh_installchangelogs.dch.trimmed debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installexamples install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean /bin/sh: 1: cd: can't cd to /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "libsquid.la" || rm -f libsquid.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/share/doc/libsquid-dev/examples/Formats/*.pl make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installman install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/compalign.1 debian/biosquid/usr/share/man/man1/compalign.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/revcomp.1 debian/biosquid/usr/share/man/man1/revcomp.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/seqsplit.1 debian/biosquid/usr/share/man/man1/seqsplit.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/stranslate.1 debian/biosquid/usr/share/man/man1/stranslate.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/weight.1 debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/compalign.1 debian/biosquid/usr/share/man/man1/revcomp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 debian/biosquid/usr/share/man/man1/stranslate.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 debian/biosquid/usr/share/man/man1/revcomp.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_lintian install -m0755 -d debian/libsquid1t64/usr/share/lintian/overrides install -p -m0644 debian/libsquid1t64.lintian-overrides debian/libsquid1t64/usr/share/lintian/overrides/libsquid1t64 dh_perl dh_link rm -f debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1 ln -s libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1 rm -f debian/libsquid-dev/usr/lib/arm-linux-gnueabihf/libsquid.so ln -s libsquid.so.1.0.0 debian/libsquid-dev/usr/lib/arm-linux-gnueabihf/libsquid.so dh_strip_nondeterminism dh_compress cd debian/biosquid cd debian/libsquid1t64 cd debian/libsquid-dev chmod a-x usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_fixperms find debian/libsquid1t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid1t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/biosquid/usr/lib/debug/.dwz/arm-linux-gnueabihf/biosquid.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/biosquid.debug -- debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/weight objcopy --compress-debug-sections debian/biosquid/usr/lib/debug/.dwz/arm-linux-gnueabihf/biosquid.debug chmod 0644 -- debian/biosquid/usr/lib/debug/.dwz/arm-linux-gnueabihf/biosquid.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/arm-linux-gnueabihf/libsquid.a install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/bc/4b186156665a842a84a57b5aa169777ef9e994.debug install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/de/107d0ab2ce37f6456c903d8ff5a02a0ef36975.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/de/107d0ab2ce37f6456c903d8ff5a02a0ef36975.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/de/107d0ab2ce37f6456c903d8ff5a02a0ef36975.debug debian/biosquid/usr/bin/stranslate install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/18/1b8b1f066de0d81bc726c765c453aa38c54e6a.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/18/1b8b1f066de0d81bc726c765c453aa38c54e6a.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/bc/4b186156665a842a84a57b5aa169777ef9e994.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/18/1b8b1f066de0d81bc726c765c453aa38c54e6a.debug debian/biosquid/usr/bin/alistat objcopy --add-gnu-debuglink debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/bc/4b186156665a842a84a57b5aa169777ef9e994.debug debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc ln -s libsquid1t64 debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc/libsquid1t64-dbgsym install -m0755 -d debian/.debhelper/libsquid1t64 install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/73 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/73/bd99db2197cb677af4abc2ebedaa818c6e77c5.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/73/bd99db2197cb677af4abc2ebedaa818c6e77c5.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/73/bd99db2197cb677af4abc2ebedaa818c6e77c5.debug debian/biosquid/usr/bin/weight install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ba objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ba/5fba1a34b0d80fa55bb56652ebd9c027475cd8.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ba/5fba1a34b0d80fa55bb56652ebd9c027475cd8.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ba/5fba1a34b0d80fa55bb56652ebd9c027475cd8.debug debian/biosquid/usr/bin/afetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2d objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2d/09014c52ad8c1cc34509f2d683eaed0a378c3f.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2d/09014c52ad8c1cc34509f2d683eaed0a378c3f.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2d/09014c52ad8c1cc34509f2d683eaed0a378c3f.debug debian/biosquid/usr/bin/revcomp install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cc/8634386d7b149fec3873da3c6353fe999b6603.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cc/8634386d7b149fec3873da3c6353fe999b6603.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cc/8634386d7b149fec3873da3c6353fe999b6603.debug debian/biosquid/usr/bin/compalign install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/da/ad5b197384b3969984cc6f5f5224e9c719b112.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/da/ad5b197384b3969984cc6f5f5224e9c719b112.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/da/ad5b197384b3969984cc6f5f5224e9c719b112.debug debian/biosquid/usr/bin/seqsplit install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/95/3c5f5a464d6c2a8b1066a708c02eb2ee17c3b6.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/95/3c5f5a464d6c2a8b1066a708c02eb2ee17c3b6.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/95/3c5f5a464d6c2a8b1066a708c02eb2ee17c3b6.debug debian/biosquid/usr/bin/sreformat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c8/9b04c4eb2d26be98bd2b71148c59dec384960d.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c8/9b04c4eb2d26be98bd2b71148c59dec384960d.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c8/9b04c4eb2d26be98bd2b71148c59dec384960d.debug debian/biosquid/usr/bin/compstruct install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/b00ef5b7aae80ed6dfd714dc0e7c325c3b74c5.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/b00ef5b7aae80ed6dfd714dc0e7c325c3b74c5.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/b00ef5b7aae80ed6dfd714dc0e7c325c3b74c5.debug debian/biosquid/usr/bin/sfetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f4/31e108367b95b6ef18382158a73d2dd4e0c5e5.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f4/31e108367b95b6ef18382158a73d2dd4e0c5e5.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f4/31e108367b95b6ef18382158a73d2dd4e0c5e5.debug debian/biosquid/usr/bin/seqstat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e0 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e0/edaa4568942f004b7f7cdb44381b3e18046a6e.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e0/edaa4568942f004b7f7cdb44381b3e18046a6e.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e0/edaa4568942f004b7f7cdb44381b3e18046a6e.debug debian/biosquid/usr/bin/sindex install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/99/93416bf93f45b1a4687d73f4c7f105d9e1f4ce.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/99/93416bf93f45b1a4687d73f4c7f105d9e1f4ce.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/99/93416bf93f45b1a4687d73f4c7f105d9e1f4ce.debug debian/biosquid/usr/bin/shuffle install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/biosquid/usr/lib/debug install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/share/doc ln -s biosquid debian/.debhelper/biosquid/dbgsym-root/usr/share/doc/biosquid-dbgsym install -m0755 -d debian/.debhelper/biosquid dh_makeshlibs -a rm -f debian/biosquid/DEBIAN/shlibs rm -f debian/libsquid1t64/DEBIAN/shlibs install -m0755 -d debian/libsquid1t64/DEBIAN echo "libsquid 1 libsquid1t64 (>= 1.9g+cvs20050121)" >> debian/libsquid1t64/DEBIAN/shlibs chmod 0644 -- debian/libsquid1t64/DEBIAN/shlibs mv debian/.debhelper/generated/libsquid1t64/triggers.new debian/.debhelper/generated/libsquid1t64/triggers echo t64:Provides= >> debian/libsquid1t64.substvars rm -f debian/libsquid-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libsquid1t64/DEBIAN dpkg-shlibdeps -Tdebian/libsquid1t64.substvars debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/DEBIAN dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/shuffle dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol floor used by debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1t64/usr/lib/arm-linux-gnueabihf/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libsquid1t64/triggers debian/libsquid1t64/DEBIAN/triggers install -m0755 -d debian/libsquid-dev/DEBIAN dh_gencontrol install -m0755 -d debian/libsquid-dev/DEBIAN echo misc:Depends= >> debian/libsquid-dev.substvars echo misc:Pre-Depends= >> debian/libsquid-dev.substvars dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -cdebian/control -Pdebian/libsquid-dev install -m0755 -d debian/libsquid1t64/DEBIAN echo misc:Depends= >> debian/libsquid1t64.substvars echo misc:Pre-Depends= >> debian/libsquid1t64.substvars install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/.debhelper/libsquid1t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libsquid1t64-dbgsym "-DDepends=libsquid1t64 (= \${binary:Version})" "-DDescription=debug symbols for libsquid1t64" -DBuild-Ids=bc4b186156665a842a84a57b5aa169777ef9e994 -DSection=debug -UReplaces -UBreaks install -m0755 -d debian/biosquid/DEBIAN echo misc:Depends= >> debian/biosquid.substvars echo misc:Pre-Depends= >> debian/biosquid.substvars install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=biosquid-dbgsym "-DDepends=biosquid (= \${binary:Version})" "-DDescription=debug symbols for biosquid" "-DBuild-Ids=181b8b1f066de0d81bc726c765c453aa38c54e6a 2d09014c52ad8c1cc34509f2d683eaed0a378c3f 73bd99db2197cb677af4abc2ebedaa818c6e77c5 953c5f5a464d6c2a8b1066a708c02eb2ee17c3b6 9993416bf93f45b1a4687d73f4c7f105d9e1f4ce ba5fba1a34b0d80fa55bb56652ebd9c027475cd8 c89b04c4eb2d26be98bd2b71148c59dec384960d cc8634386d7b149fec3873da3c6353fe999b6603 cdb00ef5b7aae80ed6dfd714dc0e7c325c3b74c5 daad5b197384b3969984cc6f5f5224e9c719b112 de107d0ab2ce37f6456c903d8ff5a02a0ef36975 e0edaa4568942f004b7f7cdb44381b3e18046a6e f431e108367b95b6ef18382158a73d2dd4e0c5e5" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/libsquid1t64 chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/biosquid chmod 0644 -- debian/libsquid1t64/DEBIAN/control chmod 0644 -- debian/biosquid/DEBIAN/control dh_md5sums install -m0755 -d debian/biosquid/DEBIAN cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libsquid-dev/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid1t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/biosquid/DEBIAN/md5sums install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libsquid1t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN chmod 0644 -- debian/libsquid-dev/DEBIAN/md5sums cd debian/.debhelper/libsquid1t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/biosquid .. dpkg-deb --root-owner-group --build debian/libsquid1t64 .. dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-15.1_armhf.deb'. dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_armhf.deb'. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-15.1_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libsquid1t64/dbgsym-root .. dpkg-deb: building package 'libsquid1t64-dbgsym' in '../libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/biosquid/dbgsym-root .. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-15.1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo dpkg-genchanges --build=binary -O../biosquid_1.9g+cvs20050121-15.1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5216 and its subdirectories I: Current time: Wed Jan 22 20:46:43 -12 2025 I: pbuilder-time-stamp: 1737622003 Thu Jan 23 08:46:55 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Thu Jan 23 08:46:55 UTC 2025 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Thu Jan 23 08:51:28 UTC 2025 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Thu Jan 23 08:51:31 UTC 2025 I: biosquid_1.9g+cvs20050121-15.1_armhf.changes: Format: 1.8 Date: Wed, 28 Feb 2024 18:29:54 +0000 Source: biosquid Binary: biosquid biosquid-dbgsym libsquid-dev libsquid1t64 libsquid1t64-dbgsym Architecture: armhf Version: 1.9g+cvs20050121-15.1 Distribution: unstable Urgency: medium Maintainer: Debian-Med Packaging Team Changed-By: Steve Langasek Description: biosquid - utilities for biological sequence analysis libsquid-dev - biosquid headers and static library for biological sequence analy libsquid1t64 - biosquid dynamic library for biological sequence analysis Closes: 1061931 Changes: biosquid (1.9g+cvs20050121-15.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1061931 Checksums-Sha1: cf4258c7c56006b6c05cd7406b191c07164d2d54 155512 biosquid-dbgsym_1.9g+cvs20050121-15.1_armhf.deb 265f2044b1333ed94feda03a772a0bab07323b66 6315 biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo df1f663310d091a9ce73d2f315eecf1d9c53fbf8 71344 biosquid_1.9g+cvs20050121-15.1_armhf.deb 0d7a541c72c465d03e7fe2b301e14130487ee299 131744 libsquid-dev_1.9g+cvs20050121-15.1_armhf.deb 06d3e34cee3313ed15631ad5966dab0122bbb20f 178104 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_armhf.deb 95671b94e4e6d5f98d8e996f83dbbf46dd6b3d4e 63432 libsquid1t64_1.9g+cvs20050121-15.1_armhf.deb Checksums-Sha256: 868c3fff92fd5d184815a3b7d84baf65ab4d1ef3cc4ce9188391dabb10d63172 155512 biosquid-dbgsym_1.9g+cvs20050121-15.1_armhf.deb 0b0e787e4c99000ff537c91eb1337bda7493c9cd0a692d867398e6c55db0212d 6315 biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo 437c8f6a191a5755cbb03fc1df3c7132668208a5a24da90ea384e2e1cb4339ec 71344 biosquid_1.9g+cvs20050121-15.1_armhf.deb 94387c7c0b6c0c099c13175d69afd012d72f9b05b121e7301a8f2a3253c357ce 131744 libsquid-dev_1.9g+cvs20050121-15.1_armhf.deb d5b304016edec6f044112a7e6b9945a36b4a3f8eb1813e9388b7312f2d8c4aee 178104 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_armhf.deb c94ee413221d563c5d870fa7d752a0cee3b6ab63dac8b5cf1a302f301086aa7e 63432 libsquid1t64_1.9g+cvs20050121-15.1_armhf.deb Files: 8193f2762b3c33a38212f8cc2ba9b9fb 155512 debug optional biosquid-dbgsym_1.9g+cvs20050121-15.1_armhf.deb 4e50aa29f6dbdead5d20219fd3725b36 6315 science optional biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo cf7d52c82ed5ddcbbb62ee7dfb42b86d 71344 science optional biosquid_1.9g+cvs20050121-15.1_armhf.deb 67bbbb8d0ed4053319a548492b209d9e 131744 libdevel optional libsquid-dev_1.9g+cvs20050121-15.1_armhf.deb 9a369d067da1f81df498b7d312a093a9 178104 debug optional libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_armhf.deb 17e1ec7a356940be0dce3368a7056d51 63432 libs optional libsquid1t64_1.9g+cvs20050121-15.1_armhf.deb Thu Jan 23 08:51:32 UTC 2025 I: diffoscope 285 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_17-13492.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bnQXK2L0/biosquid_1.9g+cvs20050121-15.1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bnQXK2L0/biosquid_1.9g+cvs20050121-15.1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bnQXK2L0/biosquid_1.9g+cvs20050121-15.1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bnQXK2L0/b1/biosquid_1.9g+cvs20050121-15.1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.bnQXK2L0/b2/biosquid_1.9g+cvs20050121-15.1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.334s) 0.334s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 629ms CPU time consumed: 630ms Thu Jan 23 08:51:33 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists. Thu Jan 23 08:51:33 UTC 2025 I: biosquid from trixie built successfully and reproducibly on armhf. Thu Jan 23 08:51:34 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Jan 23 08:51:34 UTC 2025 I: Submitting 8.0K b1/biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo.asc Thu Jan 23 08:51:34 UTC 2025 I: Submitting 8.0K b2/biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo.asc Thu Jan 23 08:51:35 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 23 08:51:35 UTC 2025 I: Done submitting .buildinfo files. Thu Jan 23 08:51:35 UTC 2025 I: Removing signed biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo.asc files: removed './b1/biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo.asc' removed './b2/biosquid_1.9g+cvs20050121-15.1_armhf.buildinfo.asc'