Mon Jan 20 04:09:52 UTC 2025 I: starting to build clonalframeml/trixie/armhf on jenkins on '2025-01-20 04:09' Mon Jan 20 04:09:52 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_29/15965/console.log Mon Jan 20 04:09:52 UTC 2025 I: Downloading source for trixie/clonalframeml=1.13-1 --2025-01-20 04:09:52-- http://deb.debian.org/debian/pool/main/c/clonalframeml/clonalframeml_1.13-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2019 (2.0K) [text/prs.lines.tag] Saving to: ‘clonalframeml_1.13-1.dsc’ 0K . 100% 66.8M=0s 2025-01-20 04:09:52 (66.8 MB/s) - ‘clonalframeml_1.13-1.dsc’ saved [2019/2019] Mon Jan 20 04:09:52 UTC 2025 I: clonalframeml_1.13-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: clonalframeml Binary: clonalframeml Architecture: any Version: 1.13-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/xavierdidelot/ClonalFrameML Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/clonalframeml Vcs-Git: https://salsa.debian.org/med-team/clonalframeml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: clonalframeml deb science optional arch=any Checksums-Sha1: 034b97be56ade035680b9e4ee773c92d7e686c87 113209 clonalframeml_1.13.orig.tar.gz e9cad3beba3cf119dce7940f9ef5d2372c8ce00f 5344 clonalframeml_1.13-1.debian.tar.xz Checksums-Sha256: 6056109380c695020afa0c26f4ce49dcb9267f1a8f26dfb42629bfa63ac25e6e 113209 clonalframeml_1.13.orig.tar.gz 2f982b33620b13e1fb75f0aebf208f8f9b628f54c7635f4250375d7bccd7d88a 5344 clonalframeml_1.13-1.debian.tar.xz Files: 997e1702db1777b52b4c1ab083b4876d 113209 clonalframeml_1.13.orig.tar.gz 9ebd3a4d5e02de37bd17c12fa5b5139a 5344 clonalframeml_1.13-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmW7jggRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHKBw/+IdIvSm0TEMnfPGJBlqgAHC/k3JkAB2+H 3K03rqaDwQKd89TeBjyQ0xli10NKFLdJ4h/+oqz4csQf6A5xiEOQsw17wfpIdJr/ bF56eh83099V62bNpvRjIHV3iWKHxbDYy6Xa7IZYTbsyOXYBEEkrpuiokWIe7PQQ CXxB0KhbHCpXq33o4MiiFrQpuVQpISVa7EHmivE9ylceAdtBPg75PrYnYI+S4Pgl VOw44TMQg7lO3uuvp04Qx+RAbKEKAYt+C/50929aokZzaLWiHuEom+/B+ElWy5Va N7ipR1UnpFCZ7eeCAzRJoh3Ov3ycGmpVtAcYsrP/KFJbrdqzwDDpEWM8HpVLj2hA VnhCStxZRbpbHBOYWTnAPcU24f8MZFVLhdaIVgXhPDAlM6rpOF+ul66NZUi72O0r RHXm0pey1MpL4Wh2HI/i5dsu0oHUPA65gY2OlHdB7ZpfZg91qD8WVYt6SdBLsDII PuihIytbBNibSzDcGIElSeCkNrUSpdJbUNQTCeZ0yCCPlWAsYsMFmqithZYHoh7H OaXCPDYifXWaDwDVZWjaOs9iW3O4U+UnOrjVG2n3kBDNbk//cQ7OQLSYcj5RHjG3 OwZdWAffaHsbIgMEWB36VA4OGE5Zyb/FPlFdmLGLMxzRx8NAG0JW+u3mEUVcjXhV Lo34CN3AiGo= =uEMc -----END PGP SIGNATURE----- Mon Jan 20 04:09:52 UTC 2025 I: Checking whether the package is not for us Mon Jan 20 04:09:52 UTC 2025 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Mon Jan 20 04:09:52 UTC 2025 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Mon Jan 20 04:12:10 UTC 2025 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 19 16:09:58 -12 2025 I: pbuilder-time-stamp: 1737346198 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [clonalframeml_1.13-1.dsc] I: copying [./clonalframeml_1.13.orig.tar.gz] I: copying [./clonalframeml_1.13-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./clonalframeml_1.13-1.dsc: unsupported subcommand dpkg-source: info: extracting clonalframeml in clonalframeml-1.13 dpkg-source: info: unpacking clonalframeml_1.13.orig.tar.gz dpkg-source: info: unpacking clonalframeml_1.13-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1752/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='64fb53cbecd64cc8bd1951f59cee438c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1752' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wdl4IVym/pbuilderrc_Xedg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wdl4IVym/b1 --logfile b1/build.log clonalframeml_1.13-1.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-30-armmp-lpae #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1752/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.6 MB of archives. After unpacking 74.1 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-4 [196 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-1 [84.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-4 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.23 [90.6 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-4 [1489 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.23 [919 kB] Fetched 19.6 MB in 2s (11.3 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-4_armhf.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-1_armhf.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_armhf.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libunistring5:armhf. Preparing to unpack .../23-libunistring5_1.3-1_armhf.deb ... Unpacking libunistring5:armhf (1.3-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-6_armhf.deb ... Unpacking libicu72:armhf (72.1-6) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-4_armhf.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libicu72:armhf (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.23) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:armhf (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.23) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/clonalframeml-1.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../clonalframeml_1.13-1_source.changes dpkg-buildpackage: info: source package clonalframeml dpkg-buildpackage: info: source version 1.13-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j3 clean make[1]: Entering directory '/build/reproducible-path/clonalframeml-1.13/src' rm -f main.o make[1]: Leaving directory '/build/reproducible-path/clonalframeml-1.13/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/clonalframeml-1.13' # upstream is querying Git for a revision which is not possible here # that's why we are using the Debian revision echo '#define ClonalFrameML_GITRevision "v1.13-1"' > src/version.h dh_auto_build cd src && make -j3 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/clonalframeml-1.13/src' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/clonalframeml-1.13=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -c -o main.o main.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -Wl,-z,relro -Wl,-z,now -o ClonalFrameML main.o make[2]: Leaving directory '/build/reproducible-path/clonalframeml-1.13/src' make[1]: Leaving directory '/build/reproducible-path/clonalframeml-1.13' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/clonalframeml/ -O--sourcedirectory=src dh_install -O--sourcedirectory=src dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/clonalframeml-1.13' dh_installexamples chmod -x debian/clonalframeml/usr/share/doc/clonalframeml/examples/* make[1]: Leaving directory '/build/reproducible-path/clonalframeml-1.13' dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/clonalframeml/usr/bin/ClonalFrameML contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'clonalframeml' in '../clonalframeml_1.13-1_armhf.deb'. dpkg-deb: building package 'clonalframeml-dbgsym' in '../clonalframeml-dbgsym_1.13-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../clonalframeml_1.13-1_armhf.buildinfo dpkg-genchanges --build=binary -O../clonalframeml_1.13-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1752 and its subdirectories I: Current time: Sun Jan 19 16:12:04 -12 2025 I: pbuilder-time-stamp: 1737346324 Mon Jan 20 04:12:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64a-armhf-rb.debian.net. Mon Jan 20 04:12:13 UTC 2025 I: Preparing to do remote build '2' on virt64a-armhf-rb.debian.net. Mon Jan 20 04:15:55 UTC 2025 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. Mon Jan 20 04:15:57 UTC 2025 I: clonalframeml_1.13-1_armhf.changes: Format: 1.8 Date: Thu, 01 Feb 2024 13:23:35 +0100 Source: clonalframeml Binary: clonalframeml clonalframeml-dbgsym Architecture: armhf Version: 1.13-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clonalframeml - Efficient Inference of Recombination in Whole Bacterial Genomes Closes: 1044020 Changes: clonalframeml (1.13-1) unstable; urgency=medium . * New upstream version . [ Komolehin Israel Timilehin ] * Add autopkgtest * Add real world example . [ Andreas Tille ] * Standards-Version: 4.6.2 (routine-update) * Fix clean target Closes: #1044020 Checksums-Sha1: 85ed59b61a947c2f476e78987f9b4edadc1c3bc5 992748 clonalframeml-dbgsym_1.13-1_armhf.deb 7ccbc7ecced15abc2aa1ae7108b14287f45681a3 4880 clonalframeml_1.13-1_armhf.buildinfo 7cb0f58c4dcf44fc0a8a5935c8e7a4548d8cdea0 94816 clonalframeml_1.13-1_armhf.deb Checksums-Sha256: 4b210bd9b5a07623015e294c5e7ad9091b14231925ec51dbb3e2c3f3c4616bd3 992748 clonalframeml-dbgsym_1.13-1_armhf.deb 77a06bac78e1076d814291249359188b32dd5d4ea7c90ab99fed90bbb8e5d4d8 4880 clonalframeml_1.13-1_armhf.buildinfo c3b14044ba4fe84a1d09d61aeed751c99d0b5c46f093c57829243c6df23cfa80 94816 clonalframeml_1.13-1_armhf.deb Files: abf5b37857511274e99ab90403631928 992748 debug optional clonalframeml-dbgsym_1.13-1_armhf.deb 2abd01d8a6dec7155839aa1a0ec39dbc 4880 science optional clonalframeml_1.13-1_armhf.buildinfo 624970a38aadfc836a0cda92b7e0b58f 94816 science optional clonalframeml_1.13-1_armhf.deb Mon Jan 20 04:15:58 UTC 2025 I: diffoscope 285 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_29-15965.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wdl4IVym/clonalframeml_1.13-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wdl4IVym/clonalframeml_1.13-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wdl4IVym/clonalframeml_1.13-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wdl4IVym/b1/clonalframeml_1.13-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.wdl4IVym/b2/clonalframeml_1.13-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.333s) 0.333s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 634ms CPU time consumed: 633ms Mon Jan 20 04:21:44 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists. Mon Jan 20 04:21:44 UTC 2025 I: clonalframeml from trixie built successfully and reproducibly on armhf. Mon Jan 20 04:21:46 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Jan 20 04:21:46 UTC 2025 I: Submitting 8.0K b1/clonalframeml_1.13-1_armhf.buildinfo.asc Mon Jan 20 04:21:54 UTC 2025 I: Submitting 8.0K b2/clonalframeml_1.13-1_armhf.buildinfo.asc Mon Jan 20 04:22:04 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 20 04:22:04 UTC 2025 I: Done submitting .buildinfo files. Mon Jan 20 04:22:04 UTC 2025 I: Removing signed clonalframeml_1.13-1_armhf.buildinfo.asc files: removed './b1/clonalframeml_1.13-1_armhf.buildinfo.asc' removed './b2/clonalframeml_1.13-1_armhf.buildinfo.asc'