Sat Feb 1 01:53:58 UTC 2025 I: starting to build density-fitness/trixie/armhf on jenkins on '2025-02-01 01:53' Sat Feb 1 01:53:58 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_9/12547/console.log Sat Feb 1 01:53:58 UTC 2025 I: Downloading source for trixie/density-fitness=1.1.2-1 --2025-02-01 01:53:58-- http://deb.debian.org/debian/pool/main/d/density-fitness/density-fitness_1.1.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2210 (2.2K) [text/prs.lines.tag] Saving to: ‘density-fitness_1.1.2-1.dsc’ 0K .. 100% 403M=0s 2025-02-01 01:53:58 (403 MB/s) - ‘density-fitness_1.1.2-1.dsc’ saved [2210/2210] Sat Feb 1 01:53:58 UTC 2025 I: density-fitness_1.1.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: density-fitness Binary: density-fitness Architecture: any Version: 1.1.2-1 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/density-fitness Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/density-fitness Vcs-Git: https://salsa.debian.org/med-team/density-fitness.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 7.0.7-2~), libpdb-redo-dev (>= 3.1.5-3~), libzeep-dev, libmcfp-dev, zlib1g-dev, cmake, libcatch2-dev, libeigen3-dev, mrc Package-List: density-fitness deb science optional arch=any Checksums-Sha1: 0fbfdcb6a1b7369004aef90a31fdcfd110eb1d57 803278 density-fitness_1.1.2.orig.tar.gz 0e5927538fdae6c869786ad49f1dba00246ce71d 668500 density-fitness_1.1.2-1.debian.tar.xz Checksums-Sha256: 1c2bb7d1f51b4ad8646eca6e106329f40acc0f1f454d4ea8d83470942d75ea30 803278 density-fitness_1.1.2.orig.tar.gz 607e623b0157289fea2f850f7fb782e9882ddfc33a4e33845bc557a96da18a73 668500 density-fitness_1.1.2-1.debian.tar.xz Files: 427c5361f18eb22b5e03d7a2e9c4893b 803278 density-fitness_1.1.2.orig.tar.gz 240f995408eb7709e48c7997247f53b0 668500 density-fitness_1.1.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEpytoJCJrtAfiS56AWHUD7Hrn7c4FAmeZ/r0WHG1hYXJ0ZW5A aGVra2VsbWFuLmNvbQAKCRBYdQPseuftzpYGEADFlTAqYMxrF5KqCcK8OqFlR1s7 xxgnRIJarNbDZ9MBLla922BqGuuMLmv++I2eazB2v99Df2jWgLpQ6+mABPEhBBsX gSgnrDo99OvmI4EGFtOd2THgt4w95BUBwJBuQ0DlgwcekBXZWv8PF+Zmc+k+hwOL WC0XXspNQssrY2WQKApfgDqt8ZI602/tXR2ZCq+T6SXmPCQKu6UBcnuIh7JXZcdy cX9BYO+nHQYcDqc+GLV6K7qg4qDuPbZzmDb77jSvwl0rSk00duBcBJg5sm2RDUZO tlIPYyf8QDPKWsyEk9eKyWftsv21uNtScQuIglcoPKz7SNM9qn+omsKzHoSMQ+9d dJ2kIkd9Mx8c1w+7oiOolx6hLXPuOqb40MePTYcT8eCZuc5RluCdd5AhXr7xNcDE Woynn0Dwuoj1SGqLvtPf7RwsweY5g0mb9EFK1YSogn9L8TD4dx5mfSEmzYNnSm5e zNmcF92paMb5GOKwhXvFBEztlnGy2+IzddwAw/3Hmt8AyFtWcywQ0UmiHMa/430a 1UCFLKpInLkI2Tk/mtKuLiGJtRhBK57PxQ63gioJcsVfsQdYNbkaGtPjihycOdMZ LZpFAq5rjN0sU2vhaIL9rdL8pR3/WCd6CIsjbop8eIuqa0NDNMd8cFHo5gEcd6PM xf2YPlxdaXyglGIEPA== =IuKp -----END PGP SIGNATURE----- Sat Feb 1 01:53:58 UTC 2025 I: Checking whether the package is not for us Sat Feb 1 01:53:58 UTC 2025 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net. Sat Feb 1 01:53:58 UTC 2025 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net. Sat Feb 1 01:58:38 UTC 2025 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 31 13:54:04 -12 2025 I: pbuilder-time-stamp: 1738374844 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [density-fitness_1.1.2-1.dsc] I: copying [./density-fitness_1.1.2.orig.tar.gz] I: copying [./density-fitness_1.1.2-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./density-fitness_1.1.2-1.dsc: unsupported subcommand dpkg-source: info: extracting density-fitness in density-fitness-1.1.2 dpkg-source: info: unpacking density-fitness_1.1.2.orig.tar.gz dpkg-source: info: unpacking density-fitness_1.1.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5173/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='e9dd1362e91e4bb79efeece3ccb39438' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5173' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h9MuClkp/pbuilderrc_RyHb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h9MuClkp/b1 --logfile b1/build.log density-fitness_1.1.2-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32a 6.1.0-30-armmp-lpae #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/5173/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcifpp-dev (>= 7.0.7-2~), libpdb-redo-dev (>= 3.1.5-3~), libzeep-dev, libmcfp-dev, zlib1g-dev, cmake, libcatch2-dev, libeigen3-dev, mrc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19575 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev (>= 7.0.7-2~); however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libpdb-redo-dev (>= 3.1.5-3~); however: Package libpdb-redo-dev is not installed. pbuilder-satisfydepends-dummy depends on libzeep-dev; however: Package libzeep-dev is not installed. pbuilder-satisfydepends-dummy depends on libmcfp-dev; however: Package libmcfp-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libcatch2-dev; however: Package libcatch2-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on mrc; however: Package mrc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} fftw-dev{a} fftw2{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcatch2-dev{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libcifpp-data{a} libcifpp-dev{a} libcifpp7{a} libclipper-dev{a} libclipper2{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libhwloc15{a} libicu-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libmcfp-dev{a} libmmdb2-0{a} libmmdb2-dev{a} libmpich12{a} libnewuoa-dev{a} libnewuoa0{a} libnghttp2-14{a} libp11-kit0{a} libpdb-redo-dev{a} libpdb-redo3{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libzeep-dev{a} libzeep5.1{a} m4{a} man-db{a} mrc{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 69.4 MB of archives. After unpacking 411 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-7 [56.3 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-7 [866 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-1 [84.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.31.4-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-4 [30.3 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-4 [75.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 27 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-4 [285 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-4 [116 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8+b1 [18.6 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8+b1 [50.6 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libldap2 armhf 2.6.9+dfsg-1 [167 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.11.1-1+b1 [304 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.31.4-2 [5912 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 54 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf debhelper all 13.24.1 [920 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-12 [263 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libhwloc15 armhf 2.11.2-1 [134 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libmpich12 armhf 4.2.1-5 [1417 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf fftw2 armhf 2.1.5-7 [188 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf fftw-dev armhf 2.1.5-7 [218 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-6 [189 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-4 [10.6 MB] Get: 67 http://deb.debian.org/debian trixie/main armhf libboost-date-time1.83.0 armhf 1.83.0-4 [230 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libboost-serialization1.83.0 armhf 1.83.0-4 [317 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libboost-serialization1.83-dev armhf 1.83.0-4 [385 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libboost-date-time1.83-dev armhf 1.83.0-4 [239 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libboost-date-time-dev armhf 1.83.0.2+b2 [3584 B] Get: 72 http://deb.debian.org/debian trixie/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 73 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83.0 armhf 1.83.0-4 [327 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83-dev armhf 1.83.0-4 [370 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libboost-program-options-dev armhf 1.83.0.2+b2 [3604 B] Get: 76 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-4 [308 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-6 [10.1 MB] Get: 78 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-4 [337 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libboost-regex-dev armhf 1.83.0.2+b2 [3856 B] Get: 80 http://deb.debian.org/debian trixie/main armhf libboost-system1.83.0 armhf 1.83.0-4 [230 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libboost-system1.83-dev armhf 1.83.0-4 [232 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libboost-system-dev armhf 1.83.0.2+b2 [3724 B] Get: 83 http://deb.debian.org/debian trixie/main armhf libcatch2-dev armhf 3.7.1-0.4 [584 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libccp4-data all 8.0.0-4 [62.7 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libccp4c0t64 armhf 8.0.0-4 [76.2 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libmmdb2-0 armhf 2.0.22-1+b2 [280 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libccp4f0t64 armhf 8.0.0-4 [195 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libccp4-dev armhf 8.0.0-4 [43.0 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libcifpp-data all 7.0.9-1 [484 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libcifpp7 armhf 7.0.9-1 [858 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libcifpp-dev armhf 7.0.9-1 [111 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf sfftw2 armhf 2.1.5-7 [190 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libclipper2 armhf 2.1.20201109-2+b3 [1106 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libmmdb2-dev armhf 2.0.22-1+b2 [92.9 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf sfftw-dev armhf 2.1.5-7 [221 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libclipper-dev armhf 2.1.20201109-2+b3 [82.4 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf pkg-config armhf 1.8.1-4 [14.0 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libeigen3-dev all 3.4.0-4 [1041 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libgslcblas0 armhf 2.8+dfsg-5 [85.5 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libgsl28 armhf 2.8+dfsg-5 [812 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libgsl-dev armhf 2.8+dfsg-5 [1030 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libmcfp-dev armhf 1.3.5-2 [19.7 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libnewuoa0 armhf 0.1.2-1 [15.4 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libnewuoa-dev armhf 0.1.2-1 [7504 B] Get: 109 http://deb.debian.org/debian trixie/main armhf libpdb-redo3 armhf 3.2.1-1 [275 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libpdb-redo-dev armhf 3.2.1-1 [627 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libzeep5.1 armhf 5.1.8-1+b1 [544 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libzeep-dev armhf 5.1.8-1+b1 [78.4 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf mrc armhf 1.3.15-2 [51.0 kB] Fetched 69.4 MB in 2s (42.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19575 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-7_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.4-7_armhf.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Preparing to unpack .../062-fftw2_2.1.5-7_armhf.deb ... Unpacking fftw2 (2.1.5-7) ... Selecting previously unselected package fftw-dev. Preparing to unpack .../063-fftw-dev_2.1.5-7_armhf.deb ... Unpacking fftw-dev (2.1.5-7) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../064-icu-devtools_72.1-6_armhf.deb ... Unpacking icu-devtools (72.1-6) ... Selecting previously unselected package libboost1.83-dev:armhf. Preparing to unpack .../065-libboost1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-date-time1.83.0:armhf. Preparing to unpack .../066-libboost-date-time1.83.0_1.83.0-4_armhf.deb ... Unpacking libboost-date-time1.83.0:armhf (1.83.0-4) ... Selecting previously unselected package libboost-serialization1.83.0:armhf. Preparing to unpack .../067-libboost-serialization1.83.0_1.83.0-4_armhf.deb ... Unpacking libboost-serialization1.83.0:armhf (1.83.0-4) ... Selecting previously unselected package libboost-serialization1.83-dev:armhf. Preparing to unpack .../068-libboost-serialization1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost-serialization1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-date-time1.83-dev:armhf. Preparing to unpack .../069-libboost-date-time1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost-date-time1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-date-time-dev:armhf. Preparing to unpack .../070-libboost-date-time-dev_1.83.0.2+b2_armhf.deb ... Unpacking libboost-date-time-dev:armhf (1.83.0.2+b2) ... Selecting previously unselected package libboost-dev:armhf. Preparing to unpack .../071-libboost-dev_1.83.0.2+b2_armhf.deb ... Unpacking libboost-dev:armhf (1.83.0.2+b2) ... Selecting previously unselected package libboost-program-options1.83.0:armhf. Preparing to unpack .../072-libboost-program-options1.83.0_1.83.0-4_armhf.deb ... Unpacking libboost-program-options1.83.0:armhf (1.83.0-4) ... Selecting previously unselected package libboost-program-options1.83-dev:armhf. Preparing to unpack .../073-libboost-program-options1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost-program-options1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-program-options-dev:armhf. Preparing to unpack .../074-libboost-program-options-dev_1.83.0.2+b2_armhf.deb ... Unpacking libboost-program-options-dev:armhf (1.83.0.2+b2) ... Selecting previously unselected package libboost-regex1.83.0:armhf. Preparing to unpack .../075-libboost-regex1.83.0_1.83.0-4_armhf.deb ... Unpacking libboost-regex1.83.0:armhf (1.83.0-4) ... Selecting previously unselected package libicu-dev:armhf. Preparing to unpack .../076-libicu-dev_72.1-6_armhf.deb ... Unpacking libicu-dev:armhf (72.1-6) ... Selecting previously unselected package libboost-regex1.83-dev:armhf. Preparing to unpack .../077-libboost-regex1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost-regex1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-regex-dev:armhf. Preparing to unpack .../078-libboost-regex-dev_1.83.0.2+b2_armhf.deb ... Unpacking libboost-regex-dev:armhf (1.83.0.2+b2) ... Selecting previously unselected package libboost-system1.83.0:armhf. Preparing to unpack .../079-libboost-system1.83.0_1.83.0-4_armhf.deb ... Unpacking libboost-system1.83.0:armhf (1.83.0-4) ... Selecting previously unselected package libboost-system1.83-dev:armhf. Preparing to unpack .../080-libboost-system1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost-system1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-system-dev:armhf. Preparing to unpack .../081-libboost-system-dev_1.83.0.2+b2_armhf.deb ... Unpacking libboost-system-dev:armhf (1.83.0.2+b2) ... Selecting previously unselected package libcatch2-dev. 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Unpacking mrc (1.3.15-2) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libboost-program-options1.83.0:armhf (1.83.0-4) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libboost1.83-dev:armhf (1.83.0-4) ... Setting up libicu72:armhf (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libboost-date-time1.83.0:armhf (1.83.0-4) ... Setting up libgslcblas0:armhf (2.8+dfsg-5) ... Setting up libmmdb2-0:armhf (2.0.22-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:armhf (1.83.0-4) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libboost-system1.83.0:armhf (1.83.0-4) ... Setting up libuv1t64:armhf (1.48.0-7) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libboost-program-options1.83-dev:armhf (1.83.0-4) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... 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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libzeep-dev (5.1.8-1+b1) ... Setting up libcifpp-dev:armhf (7.0.9-1) ... Setting up libpdb-redo-dev (3.2.1-1) ... Setting up libcurl4t64:armhf (8.11.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.4-2) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/density-fitness-1.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../density-fitness_1.1.2-1_source.changes dpkg-buildpackage: info: source package density-fitness dpkg-buildpackage: info: source version 1.1.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Git hash not found Using resources compiled with /usr/bin/mrc CMake Warning (dev) at /usr/share/cmake-3.31/Modules/CMakeFindDependencyMacro.cmake:76 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/arm-linux-gnueabihf/cmake/zeep/zeepConfig.cmake:38 (find_dependency) CMakeLists.txt:125 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70.0") found components: system date_time regex -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3.1") -- Looking for ccp4/ccp4_general.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libccp4c.so -- Looking for clipper/clipper.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-core.so -- FFTW2 libraries - /usr/lib/libsfftw.so -- - /usr/lib/libsrfftw.so -- FFTW2 header directory - /usr/include -- Performing Test _LINKING_WITH_CLIPPER_CORE -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success -- Looking for clipper/clipper-ccp4.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so -- Looking for clipper/clipper-contrib.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so -- CCP4 include directory: /usr/include -- Configuring done (9.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/density-fitness-1.1.2 -B/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make -f CMakeFiles/generate_density-fitness_depends_file.dir/build.make CMakeFiles/generate_density-fitness_depends_file.dir/depend make[3]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/density-fitness-1.1.2 /build/reproducible-path/density-fitness-1.1.2 /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/CMakeFiles/generate_density-fitness_depends_file.dir/DependInfo.cmake "--color=" make -f test/CMakeFiles/generate_unit-test-density-fitness_depends_file.dir/build.make test/CMakeFiles/generate_unit-test-density-fitness_depends_file.dir/depend make[3]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/density-fitness-1.1.2 /build/reproducible-path/density-fitness-1.1.2/test /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test/CMakeFiles/generate_unit-test-density-fitness_depends_file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make -f CMakeFiles/generate_density-fitness_depends_file.dir/build.make CMakeFiles/generate_density-fitness_depends_file.dir/build make[3]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/generate_unit-test-density-fitness_depends_file.dir/build.make test/CMakeFiles/generate_unit-test-density-fitness_depends_file.dir/build make[3]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' [ 10%] Generating depends file for density-fitness resources [ 20%] Generating depends file for unit-test-density-fitness resources cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test && /usr/bin/mrc -d /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test/mrc-unit-test-density-fitness.dir/rsrc.d -o /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test/mrc-unit-test-density-fitness.dir/rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/bin/mrc -d /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/mrc-density-fitness.dir/rsrc.d -o /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/mrc-density-fitness.dir/rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' [ 20%] Built target generate_density-fitness_depends_file make -f CMakeFiles/density-fitness.dir/build.make CMakeFiles/density-fitness.dir/depend [ 20%] Built target generate_unit-test-density-fitness_depends_file make -f test/CMakeFiles/unit-test-density-fitness.dir/build.make test/CMakeFiles/unit-test-density-fitness.dir/depend make[3]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' [ 30%] Generating mrc-density-fitness.dir/rsrc.obj /usr/bin/mrc -o /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/mrc-density-fitness.dir/rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic [ 40%] Generating mrc-unit-test-density-fitness.dir/rsrc.obj cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test && /usr/bin/mrc -o /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test/mrc-unit-test-density-fitness.dir/rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/density-fitness-1.1.2 /build/reproducible-path/density-fitness-1.1.2 /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/CMakeFiles/density-fitness.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/density-fitness-1.1.2 /build/reproducible-path/density-fitness-1.1.2/test /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test/CMakeFiles/unit-test-density-fitness.dir/DependInfo.cmake "--color=" Dependencies file "mrc-density-fitness.dir/rsrc.d" is newer than depends file "/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/CMakeFiles/density-fitness.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target density-fitness make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make -f CMakeFiles/density-fitness.dir/build.make CMakeFiles/density-fitness.dir/build make[3]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' Dependencies file "test/mrc-unit-test-density-fitness.dir/rsrc.d" is newer than depends file "/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test/CMakeFiles/unit-test-density-fitness.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit-test-density-fitness make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/unit-test-density-fitness.dir/build.make test/CMakeFiles/unit-test-density-fitness.dir/build make[3]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' [ 50%] Building CXX object CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/density-fitness-1.1.2/pdb-redo::pdb-redo -I/build/reproducible-path/density-fitness-1.1.2/include -I/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o -MF CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o.d -o CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o -c /build/reproducible-path/density-fitness-1.1.2/src/density-fitness.cpp [ 60%] Building CXX object CMakeFiles/density-fitness.dir/src/main.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/density-fitness-1.1.2/pdb-redo::pdb-redo -I/build/reproducible-path/density-fitness-1.1.2/include -I/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/density-fitness.dir/src/main.cpp.o -MF CMakeFiles/density-fitness.dir/src/main.cpp.o.d -o CMakeFiles/density-fitness.dir/src/main.cpp.o -c /build/reproducible-path/density-fitness-1.1.2/src/main.cpp [ 70%] Building CXX object test/CMakeFiles/unit-test-density-fitness.dir/unit-test-density-fitness.cpp.o cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/density-fitness-1.1.2/src -I/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-test-density-fitness.dir/unit-test-density-fitness.cpp.o -MF CMakeFiles/unit-test-density-fitness.dir/unit-test-density-fitness.cpp.o.d -o CMakeFiles/unit-test-density-fitness.dir/unit-test-density-fitness.cpp.o -c /build/reproducible-path/density-fitness-1.1.2/test/unit-test-density-fitness.cpp [ 80%] Building CXX object test/CMakeFiles/unit-test-density-fitness.dir/__/src/density-fitness.cpp.o cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/density-fitness-1.1.2/src -I/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-test-density-fitness.dir/__/src/density-fitness.cpp.o -MF CMakeFiles/unit-test-density-fitness.dir/__/src/density-fitness.cpp.o.d -o CMakeFiles/unit-test-density-fitness.dir/__/src/density-fitness.cpp.o -c /build/reproducible-path/density-fitness-1.1.2/src/density-fitness.cpp [ 90%] Linking CXX executable density-fitness /usr/bin/cmake -E cmake_link_script CMakeFiles/density-fitness.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/density-fitness.dir/link.d "CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o" "CMakeFiles/density-fitness.dir/src/main.cpp.o" "mrc-density-fitness.dir/rsrc.obj" -o density-fitness /usr/lib/arm-linux-gnueabihf/libpdb-redo.so.3.2.1 /usr/lib/arm-linux-gnueabihf/libzeep.so.5.1.8 /usr/lib/arm-linux-gnueabihf/libcifpp.so.7.0.9 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libnewuoa.so.0.1.2 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' [ 90%] Built target density-fitness [100%] Linking CXX executable unit-test-density-fitness cd /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit-test-density-fitness.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/unit-test-density-fitness.dir/link.d "CMakeFiles/unit-test-density-fitness.dir/unit-test-density-fitness.cpp.o" "CMakeFiles/unit-test-density-fitness.dir/__/src/density-fitness.cpp.o" "mrc-unit-test-density-fitness.dir/rsrc.obj" -o unit-test-density-fitness /usr/lib/arm-linux-gnueabihf/libpdb-redo.so.3.2.1 /usr/lib/arm-linux-gnueabihf/libzeep.so.5.1.8 /usr/lib/libCatch2Main.a /usr/lib/arm-linux-gnueabihf/libcifpp.so.7.0.9 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libnewuoa.so.0.1.2 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.83.0 /usr/lib/libCatch2.a make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' [100%] Built target unit-test-density-fitness make[2]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' dh_auto_test cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 make[1]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j3 UpdateCTestConfiguration from :/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: unit-test-density-fitness 1: Test command: /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test/unit-test-density-fitness "--data-dir" "/build/reproducible-path/density-fitness-1.1.2/test" 1: Working Directory: /build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf/test 1: Test timeout computed to be: 1500 1: Randomness seeded to: 2633524112 1: =============================================================================== 1: All tests passed (1668 assertions in 1 test case) 1: 1/1 Test #1: unit-test-density-fitness ........ Passed 6.01 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 6.01 sec make[1]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/density-fitness/ cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/density-fitness-1.1.2/debian/density-fitness AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/density-fitness-1.1.2 -B/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/density-fitness-1.1.2/debian/density-fitness/usr/bin/density-fitness -- Installing: /build/reproducible-path/density-fitness-1.1.2/debian/density-fitness/usr/share/man/man1/density-fitness.1 make[1]: Leaving directory '/build/reproducible-path/density-fitness-1.1.2/obj-arm-linux-gnueabihf' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/density-fitness/usr/bin/density-fitness contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'density-fitness-dbgsym' in '../density-fitness-dbgsym_1.1.2-1_armhf.deb'. dpkg-deb: building package 'density-fitness' in '../density-fitness_1.1.2-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../density-fitness_1.1.2-1_armhf.buildinfo dpkg-genchanges --build=binary -O../density-fitness_1.1.2-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5173 and its subdirectories I: Current time: Fri Jan 31 13:58:17 -12 2025 I: pbuilder-time-stamp: 1738375097 Sat Feb 1 01:58:40 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Sat Feb 1 01:58:40 UTC 2025 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Sat Feb 1 02:00:59 UTC 2025 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Sat Feb 1 02:01:02 UTC 2025 I: density-fitness_1.1.2-1_armhf.changes: Format: 1.8 Date: Wed, 29 Jan 2025 10:38:06 +0100 Source: density-fitness Binary: density-fitness density-fitness-dbgsym Architecture: armhf Version: 1.1.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: density-fitness - Calculates per-residue electron density scores Changes: density-fitness (1.1.2-1) unstable; urgency=medium . [ Nilesh Patra ] * Minor fix for autopkgtest . [ Maarten L. Hekkelman ] * New upstream version 1.1.2 Checksums-Sha1: 3107db0bc09d19fd08d3ee4c9c14f3b124077536 1055504 density-fitness-dbgsym_1.1.2-1_armhf.deb d39e46167268943ad29b01950a3a52fbe1c89b5b 7669 density-fitness_1.1.2-1_armhf.buildinfo 671dbe78efc898efe6454a6501e391a689b6f96a 487276 density-fitness_1.1.2-1_armhf.deb Checksums-Sha256: 814299ae5a1dad2655607121db90bb533d91134425ffdbb9b4e274b1ebc7fb71 1055504 density-fitness-dbgsym_1.1.2-1_armhf.deb 4bbed582b9e205a0cc3e6d2b7cfb67cca2e5b2ed91b2ca61579ea24c3e90a738 7669 density-fitness_1.1.2-1_armhf.buildinfo 70b13ef131b71ca8d6873a2630e6db1e3d3b262cdb225a274046877ac1de75fe 487276 density-fitness_1.1.2-1_armhf.deb Files: 3feb879e2d2f9974ff6b598772012fe5 1055504 debug optional density-fitness-dbgsym_1.1.2-1_armhf.deb 4637a36400da5642ac834f50e27ac2d6 7669 science optional density-fitness_1.1.2-1_armhf.buildinfo 93bed47077978ecaf6508ed477cbb437 487276 science optional density-fitness_1.1.2-1_armhf.deb Sat Feb 1 02:01:03 UTC 2025 I: diffoscope 286 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_9-12547.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.h9MuClkp/density-fitness_1.1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.h9MuClkp/density-fitness_1.1.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.h9MuClkp/density-fitness_1.1.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.h9MuClkp/b1/density-fitness_1.1.2-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.h9MuClkp/b2/density-fitness_1.1.2-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 242ms CPU time consumed: 243ms Sat Feb 1 02:01:03 UTC 2025 I: diffoscope 286 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 1 02:01:03 UTC 2025 I: density-fitness from trixie built successfully and reproducibly on armhf. Sat Feb 1 02:01:04 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 1 02:01:04 UTC 2025 I: Submitting 12K b1/density-fitness_1.1.2-1_armhf.buildinfo.asc Sat Feb 1 02:01:05 UTC 2025 I: Submitting 12K b2/density-fitness_1.1.2-1_armhf.buildinfo.asc Sat Feb 1 02:01:06 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 1 02:01:06 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 1 02:01:06 UTC 2025 I: Removing signed density-fitness_1.1.2-1_armhf.buildinfo.asc files: removed './b1/density-fitness_1.1.2-1_armhf.buildinfo.asc' removed './b2/density-fitness_1.1.2-1_armhf.buildinfo.asc'