Mon Jan 13 14:42:41 UTC 2025 I: starting to build freesasa/trixie/armhf on jenkins on '2025-01-13 14:42' Mon Jan 13 14:42:41 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_9/11655/console.log Mon Jan 13 14:42:41 UTC 2025 I: Downloading source for trixie/freesasa=2.1.2-4 --2025-01-13 14:42:41-- http://deb.debian.org/debian/pool/main/f/freesasa/freesasa_2.1.2-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2028 (2.0K) [text/prs.lines.tag] Saving to: ‘freesasa_2.1.2-4.dsc’ 0K . 100% 52.8M=0s 2025-01-13 14:42:41 (52.8 MB/s) - ‘freesasa_2.1.2-4.dsc’ saved [2028/2028] Mon Jan 13 14:42:41 UTC 2025 I: freesasa_2.1.2-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freesasa Binary: freesasa Architecture: any Version: 2.1.2-4 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://freesasa.github.io Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/freesasa Vcs-Git: https://salsa.debian.org/debichem-team/freesasa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), gemmi-dev, libjson-c-dev, libxml2-dev, pkg-config, tao-pegtl-dev, zlib1g-dev Package-List: freesasa deb science optional arch=any Checksums-Sha1: 5832e4bb0d2101d9e6d360b2c78bf3cb5bab5cfb 3281121 freesasa_2.1.2.orig.tar.gz 1230bc21930313cc6f8a6c49e3da1a424758e343 3380 freesasa_2.1.2-4.debian.tar.xz Checksums-Sha256: 98c3ebd8877daf1a886ae4b7f124b81dcb771dea7a6a864763f3e32043bfe901 3281121 freesasa_2.1.2.orig.tar.gz 11d1172147e756a68dc54275fcfcd644cc3b475722c28c2c805e60f2db66fd85 3380 freesasa_2.1.2-4.debian.tar.xz Files: 620ec39bf204863caedfca580d4c79f3 3281121 freesasa_2.1.2.orig.tar.gz 1cb27a3800bd0e3f671b1704e3715838 3380 freesasa_2.1.2-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmTTcQoSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHuMIP/jKSs2N6c7uDlKp2weVtQwTuWXiSEi2T YM95s4encmHoDIBIVuHNDk2EXVG81V4tZ/O0iSZYbIjwTYti7jU4OEqSm5UUli8g PMoluztxJeXg6AS8aFfTBOxJLx53fRA/T57p3KuUOqqpAT2Kxrq11Hi4oK/4dU/k BUTrI6/mMmK01VE9o2pRdFlIN0aYGLmtT2enUWcb5f+iYFMX2o+cvDMHX7aXeYFD ch/O7fAxWjeOdH11JyZH7H9SUtcrhTSSDJC4i/Tw+vo7CGPiVj+YPkX8zWZXwX3v KWW0mnCTMibUy/buxZ7SDwCf3Gi7DPch4yayZq1O+QH2qhK9zaQE+cErC6OP+DH2 ni7clCFv7qz64dwQ3iC9K/PBvOZ/HSug09s1G311T7YYPjdd+eTovmOfSf/V3OwN Dtn220y1vKfiDfzPnaBj1DgX5iDZZwrpwFROC49OAKQNplbSyzY5qnCpY/Xv2uZ9 edMpOLu9ddb72sQmsubW8msf9jGSggwJ1N5WGbO8ULpGIgZK/tgZl9gt88mHZMMt L/9U+74ipFP7v/Kwb9Cn+y393hIc0FR9DFZt+5/xHqTrtoykHNhboRdy1pHz6IfM 1T6WiCEVmlVKcqMZJ36Sey6NSjTLjjQdvoWRTxbKSJJT14RcCeg1iVjYD+jxWHc0 tT5snolJadl9 =MAAk -----END PGP SIGNATURE----- Mon Jan 13 14:42:41 UTC 2025 I: Checking whether the package is not for us Mon Jan 13 14:42:41 UTC 2025 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net. Mon Jan 13 14:42:41 UTC 2025 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net. Mon Jan 13 14:47:21 UTC 2025 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 13 02:42:48 -12 2025 I: pbuilder-time-stamp: 1736779368 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [freesasa_2.1.2-4.dsc] I: copying [./freesasa_2.1.2.orig.tar.gz] I: copying [./freesasa_2.1.2-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./freesasa_2.1.2-4.dsc: unsupported subcommand dpkg-source: info: extracting freesasa in freesasa-2.1.2 dpkg-source: info: unpacking freesasa_2.1.2.orig.tar.gz dpkg-source: info: unpacking freesasa_2.1.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-gnu++-setting.patch dpkg-source: info: applying fix-manpage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24612/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='b303476caef84e31b5db1a90373b7793' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24612' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LMSnBvh1/pbuilderrc_wEZI --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LMSnBvh1/b1 --logfile b1/build.log freesasa_2.1.2-4.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32a 6.1.0-29-armmp-lpae #1 SMP Debian 6.1.123-1 (2025-01-02) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/24612/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gemmi-dev, libjson-c-dev, libxml2-dev, pkg-config, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19567 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libjson-c-dev{a} libjson-c5{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpkgconf3{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libxml2-dev{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} tao-pegtl-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After unpacking 130 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-4 [196 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-13 [84.7 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-4 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.23 [90.6 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-4 [1489 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.23 [919 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf gemmi-dev armhf 0.6.5+ds-2 [1093 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-5+b1 [187 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-5+b1 [10.1 MB] Get: 35 http://deb.debian.org/debian trixie/main armhf libjson-c5 armhf 0.18+ds-1 [42.3 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libjson-c-dev armhf 0.18+ds-1 [70.4 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libxml2-dev armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf pkg-config armhf 1.8.1-4 [14.0 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Fetched 32.9 MB in 1s (46.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19567 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-4_armhf.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-13_armhf.deb ... Unpacking bsdextrautils (2.40.2-13) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_armhf.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libunistring5:armhf. Preparing to unpack .../23-libunistring5_1.3-1_armhf.deb ... Unpacking libunistring5:armhf (1.3-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-4_armhf.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Selecting previously unselected package tao-pegtl-dev. Preparing to unpack .../30-tao-pegtl-dev_3.2.7-1_all.deb ... Unpacking tao-pegtl-dev (3.2.7-1) ... Selecting previously unselected package gemmi-dev. Preparing to unpack .../31-gemmi-dev_0.6.5+ds-2_armhf.deb ... Unpacking gemmi-dev (0.6.5+ds-2) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../32-icu-devtools_72.1-5+b1_armhf.deb ... Unpacking icu-devtools (72.1-5+b1) ... Selecting previously unselected package libicu-dev:armhf. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/freesasa-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freesasa_2.1.2-4_source.changes dpkg-buildpackage: info: source package freesasa dpkg-buildpackage: info: source version 2.1.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:42: warning: The macro 'AC_PROG_CC_C99' is obsolete. configure.ac:42: You should run autoupdate. ./lib/autoconf/c.m4:1662: AC_PROG_CC_C99 is expanded from... configure.ac:42: the top level configure.ac:123: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:743: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:736: AC_PROG_LEX is expanded from... configure.ac:123: the top level configure.ac:16: installing './compile' configure.ac:46: installing './config.guess' configure.ac:46: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for ranlib... ranlib checking for sqrt in -lm... yes checking for dlsym in -ldl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for inttypes.h... (cached) yes checking for libintl.h... yes checking for malloc.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for dlfcn.h... yes checking for inline... inline checking for size_t... (cached) yes checking for C/C++ restrict keyword... __restrict__ checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for inline... (cached) inline checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for memset... yes checking for mkdir... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strncasecmp... yes checking for getopt_long... yes checking for getline... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking for pthread_create in -lpthread... yes checking for pthread.h... yes checking for xmllint... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for libxml-2.0... yes checking for json_object_get in -ljson-c... yes checking for json-c/json_object.h... yes checking for jsonlint... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating doc/Doxyfile config.status: creating doc/man/freesasa.1 config.status: creating tests/Makefile config.status: creating share/Makefile config.status: creating tests/test-cli config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' dh_auto_build -- freesasa_LDADD='libfreesasa.a ${libdir}/libgemmi_cpp.a -lz -ljson-c -lxml2' make -j3 "freesasa_LDADD=libfreesasa.a \${libdir}/libgemmi_cpp.a -lz -ljson-c -lxml2" make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make all-recursive make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making all in src make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o main.o main.cc g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o cif.o cif.cc gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o classifier.o classifier.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o classifier_protor.o classifier_protor.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o classifier_oons.o classifier_oons.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o classifier_naccess.o classifier_naccess.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o coord.o coord.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o pdb.o pdb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o log.o log.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o sasa_lr.o sasa_lr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o sasa_sr.o sasa_sr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o structure.o structure.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o node.o node.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o freesasa.o freesasa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o nb.o nb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o util.o util.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o rsa.o rsa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o selection.o selection.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o lexer.o lexer.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o parser.o parser.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o json.o json.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o xml.o xml.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -c -o example.o example.c rm -f libfreesasa.a ar cru libfreesasa.a classifier.o classifier_protor.o classifier_oons.o classifier_naccess.o coord.o pdb.o log.o sasa_lr.o sasa_sr.o structure.o node.o freesasa.o nb.o util.o rsa.o selection.o lexer.o parser.o json.o xml.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libfreesasa.a gcc -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fPIC -Wl,-z,relro -Wl,-z,now -o example example.o libfreesasa.a -ljson-c -lxml2 -lpthread -ldl -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o freesasa main.o cif.o libfreesasa.a /usr/lib/arm-linux-gnueabihf/libgemmi_cpp.a -lz -ljson-c -lxml2 -lpthread -ldl -lm make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making all in doc make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making all in tests make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making all in share make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' dh_auto_test make -j3 check "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making check in src make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making check in doc make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making check in tests make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make check-TESTS make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' PASS: test-cli ============================================================================ Testsuite summary for FreeSASA 2.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making check in share make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/freesasa/ make -j3 install DESTDIR=/build/reproducible-path/freesasa-2.1.2/debian/freesasa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making install in src make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' /usr/bin/install -c -m 644 libfreesasa.a '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/arm-linux-gnueabihf' /usr/bin/install -c freesasa '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' /usr/bin/install -c -m 644 freesasa.h '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' ( cd '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/arm-linux-gnueabihf' && ranlib libfreesasa.a ) make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making install in doc make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' /usr/bin/install -c -m 644 man/freesasa.1 '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making install in tests make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making install in share make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' /usr/bin/install -c -m 644 dssp.config naccess.config oons.config protor.config '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/freesasa/usr/bin/freesasa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'freesasa' in '../freesasa_2.1.2-4_armhf.deb'. dpkg-deb: building package 'freesasa-dbgsym' in '../freesasa-dbgsym_2.1.2-4_armhf.deb'. dpkg-genbuildinfo --build=binary -O../freesasa_2.1.2-4_armhf.buildinfo dpkg-genchanges --build=binary -O../freesasa_2.1.2-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24612 and its subdirectories I: Current time: Mon Jan 13 02:47:09 -12 2025 I: pbuilder-time-stamp: 1736779629 Mon Jan 13 14:47:23 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Mon Jan 13 14:47:23 UTC 2025 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Mon Jan 13 14:49:30 UTC 2025 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Mon Jan 13 14:49:32 UTC 2025 I: freesasa_2.1.2-4_armhf.changes: Format: 1.8 Date: Wed, 09 Aug 2023 06:56:52 -0400 Source: freesasa Binary: freesasa freesasa-dbgsym Architecture: armhf Version: 2.1.2-4 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: freesasa - Solvent Accessible Surface Area of biomolecules Changes: freesasa (2.1.2-4) unstable; urgency=medium . * Locate libgemmi_cpp.a using ${libdir} to fix build on i386. Checksums-Sha1: 66902d4344228c6375dd91d2417fe4019471c96c 1318816 freesasa-dbgsym_2.1.2-4_armhf.deb 365051febfe251e364492b13d1d404d3a80dabd3 5215 freesasa_2.1.2-4_armhf.buildinfo 9339e4201d20b5d5cc41ef4e9bb6e20da4b9edea 458584 freesasa_2.1.2-4_armhf.deb Checksums-Sha256: 6763835dbd924b82393241d2e5ab440aa745fd1d59c6b73dd59be341c4704c74 1318816 freesasa-dbgsym_2.1.2-4_armhf.deb 289ac90f1ef7bd0636402e86fc88c3bc9488b18d2aeb4981d58fd542efeaf636 5215 freesasa_2.1.2-4_armhf.buildinfo a359d3436c1ca178654b1a0b91ce53d3b6840a9c1a2493e796a3fe6c8f602822 458584 freesasa_2.1.2-4_armhf.deb Files: 38cb6380e482f95a0e1936f218c6f225 1318816 debug optional freesasa-dbgsym_2.1.2-4_armhf.deb 36ffe4c5fbd6df35c3dce9943e7c05cb 5215 science optional freesasa_2.1.2-4_armhf.buildinfo 4164346b4810f5a86191e6fd83c55c08 458584 science optional freesasa_2.1.2-4_armhf.deb Mon Jan 13 14:49:33 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_9-11655.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.LMSnBvh1/freesasa_2.1.2-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.LMSnBvh1/freesasa_2.1.2-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.LMSnBvh1/freesasa_2.1.2-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.LMSnBvh1/b1/freesasa_2.1.2-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.LMSnBvh1/b2/freesasa_2.1.2-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.353s) 0.353s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 642ms CPU time consumed: 642ms Mon Jan 13 14:49:34 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Mon Jan 13 14:49:34 UTC 2025 I: freesasa from trixie built successfully and reproducibly on armhf. Mon Jan 13 14:49:35 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Jan 13 14:49:35 UTC 2025 I: Submitting 8.0K b1/freesasa_2.1.2-4_armhf.buildinfo.asc Mon Jan 13 14:49:36 UTC 2025 I: Submitting 8.0K b2/freesasa_2.1.2-4_armhf.buildinfo.asc Mon Jan 13 14:49:37 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 13 14:49:37 UTC 2025 I: Done submitting .buildinfo files. Mon Jan 13 14:49:37 UTC 2025 I: Removing signed freesasa_2.1.2-4_armhf.buildinfo.asc files: removed './b1/freesasa_2.1.2-4_armhf.buildinfo.asc' removed './b2/freesasa_2.1.2-4_armhf.buildinfo.asc'