Sat Feb 1 02:27:26 UTC 2025 I: starting to build libpdb-redo/trixie/armhf on jenkins on '2025-02-01 02:27' Sat Feb 1 02:27:26 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/9675/console.log Sat Feb 1 02:27:26 UTC 2025 I: Downloading source for trixie/libpdb-redo=3.2.1-1 --2025-02-01 02:27:26-- http://deb.debian.org/debian/pool/main/libp/libpdb-redo/libpdb-redo_3.2.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2311 (2.3K) [text/prs.lines.tag] Saving to: ‘libpdb-redo_3.2.1-1.dsc’ 0K .. 100% 361M=0s 2025-02-01 02:27:26 (361 MB/s) - ‘libpdb-redo_3.2.1-1.dsc’ saved [2311/2311] Sat Feb 1 02:27:26 UTC 2025 I: libpdb-redo_3.2.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libpdb-redo Binary: libpdb-redo-dev, libpdb-redo3 Architecture: any Version: 3.2.1-1 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/libpdb-redo Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libpdb-redo Vcs-Git: https://salsa.debian.org/med-team/libpdb-redo.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, mrc Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 7), cmake, libcatch2-dev, libnewuoa-dev (>= 0.1.2), pkgconf, libgsl-dev, libboost-dev, libboost-regex-dev, libeigen3-dev, libclipper-dev, zlib1g-dev, libccp4-dev (>= 6.5.1-5) Package-List: libpdb-redo-dev deb libdevel optional arch=any libpdb-redo3 deb libs optional arch=any Checksums-Sha1: fa2ba74b04badb2c86bf5194bad6d05494369443 877513 libpdb-redo_3.2.1.orig.tar.gz bfbeaccac00cba169c42a4eafb644f5dbd85ccc8 4292 libpdb-redo_3.2.1-1.debian.tar.xz Checksums-Sha256: ad8790eab415fe9f8e44723b1090cda510153d9ef4791066f201a36bacbdc901 877513 libpdb-redo_3.2.1.orig.tar.gz 8ffc5b3b41ecd9dd7cf24d45579e1cb07dcad69b00af484a75399c75a8128555 4292 libpdb-redo_3.2.1-1.debian.tar.xz Files: 321ab43703aa51cf2b84d1cf835bffe7 877513 libpdb-redo_3.2.1.orig.tar.gz f4c8629e4df400da29338791f6a1d544 4292 libpdb-redo_3.2.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEpytoJCJrtAfiS56AWHUD7Hrn7c4FAmeZBUUWHG1hYXJ0ZW5A aGVra2VsbWFuLmNvbQAKCRBYdQPseuftzjXNEACPeZaqiwaE5y+fEQTG3sVVZ3kN 7hqhCX16yNgepRpvFtCk85KenColafu+RwrgFLH5GuwFDG7/gFtpPbeDUxATSi4I o/gs4ZOOdLkmqjM8QGlCCsJSS0Xd29UGh2pzIT7zKwvHzMhbXCpwgpynxNqQZWtr H/8+eM64h3QJr2k6FDmhuuN8EbBc4VU1fpR2OXysb/mV+uCdcTEY9Au557guD13R 8mhD0BGZF6oNdDMEnW9XHjJkUixN9fH7x+yZZDsDjOnlQAMjzuk1SgBCGGIkUiIH bqygLv2JY1qnHRbT7GSSOwo0RO89zEjwSWrhMgo6bRYhxOaiq3OvvHSVEuAWzkX4 QP+iYcgx2ggir7vzr+6nT2BkYIHzonu7tA05rwfBfBMosGrNZYlZtKxw4v7qoaOD mfqEkp3WiltzHM+9VTNECgsGvtbdwMiSLCYVUw2CzW4PiX9K4HMluT6P/2t5YF6v a+n26ZSix4qWkCV0ZL9z575NJzz1gKIR3f47mCZ0/QE0b8BkmgBnciJasI1pKLJq 4BcWjHQHbVX1pvAaFtWoTFulxR1Y3y4NQDMp4xp3kAuGxmUe2QPJF3Bvh/Cl3LFB yaZ59qY3ufhld/opSB4PK/pYXj/990BNhM/J/6fOah4hhaHYNu2zizy6kIjXwa33 6+PJUim2CBvxmuVsyw== =gDqi -----END PGP SIGNATURE----- Sat Feb 1 02:27:26 UTC 2025 I: Checking whether the package is not for us Sat Feb 1 02:27:26 UTC 2025 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Sat Feb 1 02:27:26 UTC 2025 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Sat Feb 1 02:39:35 UTC 2025 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 31 14:27:35 -12 2025 I: pbuilder-time-stamp: 1738376855 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpdb-redo_3.2.1-1.dsc] I: copying [./libpdb-redo_3.2.1.orig.tar.gz] I: copying [./libpdb-redo_3.2.1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libpdb-redo_3.2.1-1.dsc: unsupported subcommand dpkg-source: info: extracting libpdb-redo in libpdb-redo-3.2.1 dpkg-source: info: unpacking libpdb-redo_3.2.1.orig.tar.gz dpkg-source: info: unpacking libpdb-redo_3.2.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32094/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='8c5b08c903a642e1bb9e1fdce76ed96f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32094' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9LVVGNTy/pbuilderrc_PtNJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9LVVGNTy/b1 --logfile b1/build.log libpdb-redo_3.2.1-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-30-armmp #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/32094/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcifpp-dev (>= 7), cmake, libcatch2-dev, libnewuoa-dev (>= 0.1.2), pkgconf, libgsl-dev, libboost-dev, libboost-regex-dev, libeigen3-dev, libclipper-dev, zlib1g-dev, libccp4-dev (>= 6.5.1-5) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19575 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev (>= 7); however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libcatch2-dev; however: Package libcatch2-dev is not installed. pbuilder-satisfydepends-dummy depends on libnewuoa-dev (>= 0.1.2); however: Package libnewuoa-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libclipper-dev; however: Package libclipper-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libccp4-dev (>= 6.5.1-5); however: Package libccp4-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} fftw-dev{a} fftw2{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcatch2-dev{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libcifpp-data{a} libcifpp-dev{a} libcifpp7{a} libclipper-dev{a} libclipper2{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libhwloc15{a} libicu-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libmmdb2-0{a} libmmdb2-dev{a} libmpich12{a} libnewuoa-dev{a} libnewuoa0{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 65.4 MB of archives. After unpacking 385 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-7 [56.3 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-7 [866 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-1 [84.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.31.4-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-4 [30.3 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-4 [75.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 27 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-4 [285 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-4 [116 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8+b1 [18.6 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8+b1 [50.6 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libldap2 armhf 2.6.9+dfsg-1 [167 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.11.1-1+b1 [304 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.31.4-2 [5912 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 54 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf debhelper all 13.24.1 [920 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-12 [263 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libhwloc15 armhf 2.11.2-1 [134 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libmpich12 armhf 4.2.1-5 [1417 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf fftw2 armhf 2.1.5-7 [188 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf fftw-dev armhf 2.1.5-7 [218 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-6 [189 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-4 [10.6 MB] Get: 67 http://deb.debian.org/debian trixie/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 68 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-4 [308 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-6 [10.1 MB] Get: 70 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-4 [337 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libboost-regex-dev armhf 1.83.0.2+b2 [3856 B] Get: 72 http://deb.debian.org/debian trixie/main armhf libcatch2-dev armhf 3.7.1-0.4 [584 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libccp4-data all 8.0.0-4 [62.7 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libccp4c0t64 armhf 8.0.0-4 [76.2 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libmmdb2-0 armhf 2.0.22-1+b2 [280 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libccp4f0t64 armhf 8.0.0-4 [195 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libccp4-dev armhf 8.0.0-4 [43.0 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libcifpp-data all 7.0.9-1 [484 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libcifpp7 armhf 7.0.9-1 [858 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libcifpp-dev armhf 7.0.9-1 [111 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf sfftw2 armhf 2.1.5-7 [190 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libclipper2 armhf 2.1.20201109-2+b3 [1106 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libmmdb2-dev armhf 2.0.22-1+b2 [92.9 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf sfftw-dev armhf 2.1.5-7 [221 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libclipper-dev armhf 2.1.20201109-2+b3 [82.4 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libeigen3-dev all 3.4.0-4 [1041 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libgslcblas0 armhf 2.8+dfsg-5 [85.5 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libgsl28 armhf 2.8+dfsg-5 [812 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libgsl-dev armhf 2.8+dfsg-5 [1030 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libnewuoa0 armhf 0.1.2-1 [15.4 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libnewuoa-dev armhf 0.1.2-1 [7504 B] Fetched 65.4 MB in 5s (12.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19575 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_armhf.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Unpacking libgsl28:armhf (2.8+dfsg-5) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../92-libgsl-dev_2.8+dfsg-5_armhf.deb ... Unpacking libgsl-dev (2.8+dfsg-5) ... Selecting previously unselected package libnewuoa0. Preparing to unpack .../93-libnewuoa0_0.1.2-1_armhf.deb ... Unpacking libnewuoa0 (0.1.2-1) ... Selecting previously unselected package libnewuoa-dev. Preparing to unpack .../94-libnewuoa-dev_0.1.2-1_armhf.deb ... Unpacking libnewuoa-dev (0.1.2-1) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libboost1.83-dev:armhf (1.83.0-4) ... Setting up libicu72:armhf (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libgslcblas0:armhf (2.8+dfsg-5) ... Setting up libmmdb2-0:armhf (2.0.22-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:armhf (1.83.0-4) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libuv1t64:armhf (1.48.0-7) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:armhf (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libccp4-data (8.0.0-4) ... Setting up libnewuoa0 (0.1.2-1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-4) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:armhf (1.8.1-4) ... Setting up libjsoncpp26:armhf (1.9.6-3) ... Setting up libproc2-0:armhf (2:4.0.4-7) ... Setting up libunistring5:armhf (1.3-1) ... Setting up libhwloc15:armhf (2.11.2-1) ... Setting up libmmdb2-dev (2.0.22-1+b2) ... Setting up autopoint (0.23.1-1) ... Setting up icu-devtools (72.1-6) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:armhf (1.21.3-4) ... Setting up libcifpp-data (7.0.9-1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:armhf (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:armhf (3.4.6-1) ... Setting up dwz (0.15-1+b2) ... Setting up libmpich12:armhf (4.2.1-5) ... Setting up sensible-utils (0.0.24) ... Setting up libccp4c0t64:armhf (8.0.0-4) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:armhf (4.19.0-3+b3) ... Setting up cmake-data (3.31.4-2) ... Setting up librhash1:armhf (1.4.5-1) ... Setting up libkrb5-3:armhf (1.21.3-4) ... Setting up libboost-dev:armhf (1.83.0.2+b2) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libgsl28:armhf (2.8+dfsg-5) ... Setting up libcatch2-dev (3.7.1-0.4) ... Setting up libicu-dev:armhf (72.1-6) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:armhf (2.6.9+dfsg-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libtool (2.5.4-2) ... Setting up libnewuoa-dev (0.1.2-1) ... Setting up sfftw2 (2.1.5-7) ... Setting up libcifpp7:armhf (7.0.9-1) ... Setting up libidn2-0:armhf (2.3.7-2+b1) ... Setting up libccp4f0t64:armhf (8.0.0-4) ... Setting up pkgconf:armhf (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up fftw2 (2.1.5-7) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up sfftw-dev (2.1.5-7) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:armhf (1.21.3-4) ... Setting up libboost-regex1.83-dev:armhf (1.83.0-4) ... Setting up libclipper2:armhf (2.1.20201109-2+b3) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up fftw-dev (2.1.5-7) ... Setting up libboost-regex-dev:armhf (1.83.0.2+b2) ... Setting up libarchive13t64:armhf (3.7.4-1.1) ... Setting up libgnutls30t64:armhf (3.8.8-2) ... Setting up libccp4-dev:armhf (8.0.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libclipper-dev:armhf (2.1.20201109-2+b3) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcifpp-dev:armhf (7.0.9-1) ... Setting up libcurl4t64:armhf (8.11.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.4-2) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libpdb-redo-3.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpdb-redo_3.2.1-1_source.changes dpkg-buildpackage: info: source package libpdb-redo dpkg-buildpackage: info: source version 3.2.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1' dh_auto_configure -- -DBUILD_SHARED_LIBS=ON -DPDB_REDO_BUILD_TESTS=ON -DBUILD_MINIMIZER=OFF cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_SHARED_LIBS=ON -DPDB_REDO_BUILD_TESTS=ON -DBUILD_MINIMIZER=OFF .. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for ccp4/ccp4_general.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libccp4c.so -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for clipper/clipper.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-core.so -- FFTW2 libraries - /usr/lib/libsfftw.so -- - /usr/lib/libsrfftw.so -- FFTW2 header directory - /usr/include -- Performing Test _LINKING_WITH_CLIPPER_CORE -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success -- Looking for clipper/clipper-ccp4.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so -- Looking for clipper/clipper-contrib.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so -- CCP4 include directory: /usr/include -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3.1") -- Git hash not found -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done (19.1s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PDB_REDO_BUILD_TESTS -- Build files have been written to: /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1' dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libpdb-redo-3.2.1 -B/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' make -f CMakeFiles/pdb-redo.dir/build.make CMakeFiles/pdb-redo.dir/depend make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/CMakeFiles/pdb-redo.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' make -f CMakeFiles/pdb-redo.dir/build.make CMakeFiles/pdb-redo.dir/build make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' [ 17%] Building CXX object CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o [ 17%] Building CXX object CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o [ 17%] Building CXX object CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -MF CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/AtomShape.cpp /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/BondMap.cpp /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/ClipperWrapper.cpp [ 23%] Building CXX object CMakeFiles/pdb-redo.dir/src/Compound.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Compound.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Compound.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Compound.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Compound.cpp [ 29%] Building CXX object CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/DistanceMap.cpp [ 35%] Building CXX object CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -MF CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/MapMaker.cpp [ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Ramachandran.cpp /build/reproducible-path/libpdb-redo-3.2.1/src/MapMaker.cpp: In member function ‘void pdb_redo::MapMaker::fixMTZ() [with FTYPE = float]’: /build/reproducible-path/libpdb-redo-3.2.1/src/MapMaker.cpp:1135:22: note: parameter passing for argument of type ‘clipper::datatypes::F_phi’ when C++17 is enabled changed to match C++14 in GCC 10.1 1135 | auto mFo = mFbData[ih] - mFdData[ih]; | ^~~ [ 47%] Building CXX object CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/ResolutionCalculator.cpp [ 52%] Building CXX object CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -MF CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/SkipList.cpp [ 58%] Building CXX object CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp:27: /usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp:542:41: required from here 542 | mRmsScaled[zsc.first] = std::make_pair(qa * mRMSDensityFd, qb * mRMSDensityFd); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ In file included from /usr/include/c++/14/vector:72, from /usr/include/clipper/ccp4/ccp4_utils.h:49, from /usr/include/clipper/clipper-ccp4.h:7, from /build/reproducible-path/libpdb-redo-3.2.1/src/MapMaker.cpp:31: /usr/include/c++/14/bits/vector.tcc: In member function ‘constexpr void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66: In member function ‘constexpr void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at /usr/include/clipper/core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at /usr/include/clipper/core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at /usr/include/clipper/core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at /usr/include/clipper/core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at /usr/include/clipper/core/resol_basisfn.h:136:120, inlined from ‘void pdb_redo::MapMaker::printStats() [with FTYPE = float]’ at /build/reproducible-path/libpdb-redo-3.2.1/src/MapMaker.cpp:1177:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘constexpr void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at /usr/include/clipper/core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at /usr/include/clipper/core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at /usr/include/clipper/core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at /usr/include/clipper/core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at /usr/include/clipper/core/resol_basisfn.h:136:120, inlined from ‘void pdb_redo::MapMaker::printStats() [with FTYPE = double]’ at /build/reproducible-path/libpdb-redo-3.2.1/src/MapMaker.cpp:1177:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/pdb-redo.dir/src/TLS.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/TLS.cpp.o -MF CMakeFiles/pdb-redo.dir/src/TLS.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/TLS.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/TLS.cpp In file included from /usr/include/c++/14/regex:52, from /usr/include/cif++/condition.hpp:35, from /usr/include/cif++/category.hpp:31, from /usr/include/cif++/datablock.hpp:29, from /usr/include/cif++/file.hpp:31, from /usr/include/cif++.hpp:30, from /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp:30: /usr/include/c++/14/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/set:62, from /usr/include/cif++/text.hpp:35, from /usr/include/cif++/item.hpp:31, from /usr/include/cif++/row.hpp:29, from /usr/include/cif++/condition.hpp:29: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = clipper::Coord_grid; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = pdb_redo::StatsCollector::cmpGPt; _Alloc = std::allocator >]’: /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, pdb_redo::StatsCollector::cmpGPt, std::allocator > >::const_iterator’ changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/regex:56: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = clipper::Coord_grid; _Tp = double; _Compare = pdb_redo::StatsCollector::cmpGPt; _Alloc = std::allocator >]’, inlined from ‘void pdb_redo::StatsCollector::collectSums(std::vector&, GridPtDataMap&) const’ at /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp:1022:36: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, pdb_redo::StatsCollector::cmpGPt, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = clipper::Coord_grid; _Tp = double; _Compare = pdb_redo::StatsCollector::cmpGPt; _Alloc = std::allocator >]’, inlined from ‘pdb_redo::StatsCollector::sumDensity(std::vector&, GridPtDataMap&, std::map, std::vector >&) const::’ at /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp:987:32, inlined from ‘void pdb_redo::iterateGrid(const clipper::Coord_orth&, float, const clipper::Xmap&, F&&) [with F = StatsCollector::sumDensity(std::vector&, GridPtDataMap&, std::map, std::vector >&) const::; FTYPE = float]’ at /build/reproducible-path/libpdb-redo-3.2.1/include/pdb-redo/Statistics.hpp:75:9, inlined from ‘void pdb_redo::StatsCollector::sumDensity(std::vector&, GridPtDataMap&, std::map, std::vector >&) const’ at /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp:974:14: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, pdb_redo::StatsCollector::cmpGPt, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from ‘void pdb_redo::StatsCollector::initialize()’ at /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp:480:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 [ 70%] Building CXX object CMakeFiles/pdb-redo.dir/src/Version.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Version.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Version.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Version.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Version.cpp [ 76%] Linking CXX shared library libpdb-redo.so /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb-redo.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,--dependency-file=CMakeFiles/pdb-redo.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpdb-redo.so.3.2 -o libpdb-redo.so.3.2.1 "CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o" "CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o" "CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o" "CMakeFiles/pdb-redo.dir/src/Compound.cpp.o" "CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o" "CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o" "CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o" "CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o" "CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o" "CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o" "CMakeFiles/pdb-redo.dir/src/TLS.cpp.o" "CMakeFiles/pdb-redo.dir/src/Version.cpp.o" /usr/lib/arm-linux-gnueabihf/libcifpp.so.7.0.9 /usr/lib/arm-linux-gnueabihf/libnewuoa.so.0.1.2 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so /usr/lib/arm-linux-gnueabihf/libz.so /usr/bin/cmake -E cmake_symlink_library libpdb-redo.so.3.2.1 libpdb-redo.so.3.2 libpdb-redo.so make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' [ 76%] Built target pdb-redo make -f test/CMakeFiles/pdb-redo-unit-test.dir/build.make test/CMakeFiles/pdb-redo-unit-test.dir/depend make -f test/CMakeFiles/restr2ccd-test.dir/build.make test/CMakeFiles/restr2ccd-test.dir/depend make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1/test /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test/CMakeFiles/pdb-redo-unit-test.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1/test /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test/CMakeFiles/restr2ccd-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/restr2ccd-test.dir/build.make test/CMakeFiles/restr2ccd-test.dir/build make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/pdb-redo-unit-test.dir/build.make test/CMakeFiles/pdb-redo-unit-test.dir/build make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' [ 88%] Building CXX object test/CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o [ 88%] Building CXX object test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o cd /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libpdb-redo-3.2.1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o -MF CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o.d -o CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/test/restr2ccd-test.cpp cd /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libpdb-redo-3.2.1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -MF CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o.d -o CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/test/pdb-redo-unit-test.cpp [ 94%] Linking CXX executable restr2ccd-test cd /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/restr2ccd-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/restr2ccd-test.dir/link.d "CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o" -o restr2ccd-test -Wl,-rpath,/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf ../libpdb-redo.so.3.2.1 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libcifpp.so.7.0.9 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libnewuoa.so.0.1.2 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' [ 94%] Built target restr2ccd-test [100%] Linking CXX executable pdb-redo-unit-test cd /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb-redo-unit-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pdb-redo-unit-test.dir/link.d "CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o" -o pdb-redo-unit-test -Wl,-rpath,/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf ../libpdb-redo.so.3.2.1 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libcifpp.so.7.0.9 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libnewuoa.so.0.1.2 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' [100%] Built target pdb-redo-unit-test make[2]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' dh_auto_test cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j3 UpdateCTestConfiguration from :/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: pdb-redo-unit-test 1: Test command: /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test/pdb-redo-unit-test "--data-dir" "/build/reproducible-path/libpdb-redo-3.2.1/test" 1: Working Directory: /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test 1: Test timeout computed to be: 1500 test 2 Start 2: restr2ccd-test 2: Test command: /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test/restr2ccd-test "--data-dir" "/build/reproducible-path/libpdb-redo-3.2.1/test" 2: Working Directory: /build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf/test 2: Test timeout computed to be: 1500 2: CCD components.cif resource was not found 2: Randomness seeded to: 3556060673 2: Could not load the mon_lib_list.cif file from CCP4, please make sure you have installed CCP4 and sourced the environment. 2: 2: Configuration error: 2: 2: The attempt to retrieve compound information for "U8U" failed. 2: 2: This information is searched for in a CCD file called components.cif or 2: components.cif.gz which should be located in one of the following directories: 2: 2: "/var/cache/libcifpp" 2: "/usr/share/libcifpp" 2: 2: (Note that you can add a directory to the search paths by setting the 2: LIBCIFPP_DATA_DIR environmental variable) 2: 2: On Linux an optional cron script might have been installed that automatically updates 2: components.cif and mmCIF dictionary files. This script only works when the file 2: libcifpp.conf contains an uncommented line with the text: 2: 2: update=true 2: 2: If you do not have a working cron script, you can manually update the files 2: in /var/cache/libcifpp using the following commands: 2: 2: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif 2: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic 2: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic 2: 2: The current order of compound factory objects is: 2: 2: CCD components file: "/build/reproducible-path/libpdb-redo-3.2.1/test/minimal-components.cif" 2: =============================================================================== 2: All tests passed (12 assertions in 1 test case) 2: 1/2 Test #2: restr2ccd-test ................... Passed 0.10 sec 1: Randomness seeded to: 1155609323 1: Reading map from "/build/reproducible-path/libpdb-redo-3.2.1/test/../examples/1cbs_map.mtz" 1: with labels: FB: FWT,PHWT 1: with labels: FD: DELFWT,PHDELWT 1: with labels: FA: FAN,PHAN 1: with labels: FO: FP,SIGFP 1: with labels: FC: FC_ALL,PHIC_ALL 1: Read Xmaps with sampling rate: 1.5 1: stored resolution: 1.79991 1: calculated reshi = 1.80009 reslo = 7.99918 1: spacegroup: P 21 21 21 1: cell: Cell ( 45.65, 47.56, 77.61, 90, 90, 90) 1: grid: Nuvw = ( 80, 80, 132) 1: R-factor : 0.180853 1: Free R-factor : 0.184876 1: Loading component LYS... done 1: Loading component ILE... done 1: Loading component ARG... done 1: Loading component GLU... done 1: Loading component LEU... done 1: Loading component VAL... done 1: Loading component MET... done 1: Loading component ALA... done 1: Loading component GLN... done 1: Loading component ASP... done 1: Loading component THR... done 1: Loading component TYR... done 1: Loading component CYS... done 1: Loading component REA... done 1: Loading component HOH... 1: Configuration error: 1: 1: The attempt to retrieve compound information for "HOH" failed. 1: 1: This information is searched for in a CCD file called components.cif or 1: components.cif.gz which should be located in one of the following directories: 1: 1: "/var/cache/libcifpp" 1: "/usr/share/libcifpp" 1: 1: (Note that you can add a directory to the search paths by setting the 1: LIBCIFPP_DATA_DIR environmental variable) 1: 1: On Linux an optional cron script might have been installed that automatically updates 1: components.cif and mmCIF dictionary files. This script only works when the file 1: libcifpp.conf contains an uncommented line with the text: 1: 1: update=true 1: 1: If you do not have a working cron script, you can manually update the files 1: in /var/cache/libcifpp using the following commands: 1: 1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif 1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic 1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic 1: 1: The current order of compound factory objects is: 1: 1: CCD components file: "/build/reproducible-path/libpdb-redo-3.2.1/test/minimal-components.cif" 1: done 1: 1: Intercept & gradient before LS: -0.076201 (0.000425224) 0.1134 (0.00066587) 1: 1: Rescale SD(delta-rho) using Q-Q plot for asym A: 1: ====================================================== 1: Input & updated SD(delta-rho): 0.123854 ; 0.137899 1: 1: 1: Intercept & gradient before LS: 0.112013 (0.00322152) -0.0975523 (0.00506053) 1: 1: Rescale SD(delta-rho) using Q-Q plot for asym B: 1: ====================================================== 1: Input & updated SD(delta-rho): 0.123854 ; 0.111772 1: 1: 1: Intercept & gradient before LS: -0.038699 (0.00144741) -0.0997851 (0.00226694) 1: 1: Rescale SD(delta-rho) using Q-Q plot for asym C: 1: ====================================================== 1: Input & updated SD(delta-rho): 0.123854 ; 0.111495 1: 1: Calculating radii with B Factor 24.9788 1: Radius for atom with type N is 1.03582 1: Radius for atom with type C is 1.04896 1: Radius for atom with type O is 1.02401 1: Radius for atom with type S is 1.01993 1: skipping water in bond map calculation 1: Loading component HOH... done 1: Unknown compound: HOH 1: Missing compound information for HOH 1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme 1: Reading map from "/build/reproducible-path/libpdb-redo-3.2.1/test/../examples/1cbs_map.mtz" 1: with labels: FB: FWT,PHWT 1: with labels: FD: DELFWT,PHDELWT 1: with labels: FA: FAN,PHAN 1: with labels: FO: FP,SIGFP 1: with labels: FC: FC_ALL,PHIC_ALL 1: Read Xmaps with sampling rate: 0.75 1: stored resolution: 1.79991 1: calculated reshi = 1.80009 reslo = 7.99918 1: spacegroup: P 21 21 21 1: cell: Cell ( 45.65, 47.56, 77.61, 90, 90, 90) 1: grid: Nuvw = ( 40, 40, 72) 1: R-factor : 0.180853 1: Free R-factor : 0.184876 1: Loading component U_K... done 1: 1: Intercept & gradient before LS: -0.0615663 (0.000573911) 0.0873704 (0.000898727) 1: 1: Rescale SD(delta-rho) using Q-Q plot for asym A: 1: ====================================================== 1: Input & updated SD(delta-rho): 0.11509 ; 0.125146 1: 1: 1: Intercept & gradient before LS: 0.0679982 (0.0146148) -0.0420235 (0.0228119) 1: 1: Rescale SD(delta-rho) using Q-Q plot for asym B: 1: ====================================================== 1: Input & updated SD(delta-rho): 0.11509 ; 0.110254 1: 1: 1: Intercept & gradient before LS: -0.00860157 (0.000800546) -0.185508 (0.00125356) 1: 1: Rescale SD(delta-rho) using Q-Q plot for asym C: 1: ====================================================== 1: Input & updated SD(delta-rho): 0.11509 ; 0.09374 1: 1: Calculating radii with B Factor 24.9788 1: Radius for atom with type N is 1.03582 1: Radius for atom with type C is 1.04896 1: Radius for atom with type O is 1.02401 1: Radius for atom with type S is 1.01993 1: skipping water in bond map calculation 1: Missing compound bond info for U_K 1: Missing information for compound 'U_K' 1: Missing bond information for compound U_K 1: Loading component HOH... done 1: Unknown compound: HOH 1: Missing compound information for HOH 1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme 1: skipping water in bond map calculation 1: skipping water in bond map calculation 1: =============================================================================== 1: All tests passed (738136 assertions in 7 test cases) 1: 2/2 Test #1: pdb-redo-unit-test ............... Passed 22.65 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 22.67 sec make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/libpdb-redo-3.2.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libpdb-redo-3.2.1 -B/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.3.2.1 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.3.2 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.so -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoTargets.cmake -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoTargets-none.cmake -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/TLS.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/MapMaker.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Version.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/exports.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Statistics.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/DistanceMap.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Ramachandran.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Compound.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/AtomShape.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/ResolutionCalculator.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/ClipperWrapper.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Restraints.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Minimizer.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/SkipList.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/BondMap.hpp -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoConfig.cmake -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoConfigVersion.cmake -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/libpdb-redo.pc make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-arm-linux-gnueabihf' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libpdb-redo3/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.3.2.1 found in none of the libraries dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libpdb-redo3-dbgsym' in '../libpdb-redo3-dbgsym_3.2.1-1_armhf.deb'. dpkg-deb: building package 'libpdb-redo-dev' in '../libpdb-redo-dev_3.2.1-1_armhf.deb'. dpkg-deb: building package 'libpdb-redo3' in '../libpdb-redo3_3.2.1-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libpdb-redo_3.2.1-1_armhf.buildinfo dpkg-genchanges --build=binary -O../libpdb-redo_3.2.1-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32094 and its subdirectories I: Current time: Fri Jan 31 14:39:07 -12 2025 I: pbuilder-time-stamp: 1738377547 Sat Feb 1 02:39:37 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Sat Feb 1 02:39:37 UTC 2025 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Sat Feb 1 02:51:20 UTC 2025 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Sat Feb 1 02:51:23 UTC 2025 I: libpdb-redo_3.2.1-1_armhf.changes: Format: 1.8 Date: Tue, 28 Jan 2025 16:20:25 +0100 Source: libpdb-redo Binary: libpdb-redo-dev libpdb-redo3 libpdb-redo3-dbgsym Architecture: armhf Version: 3.2.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: libpdb-redo-dev - Development files for libpdb-redo libpdb-redo3 - Library file for libpdb-redo Changes: libpdb-redo (3.2.1-1) unstable; urgency=medium . * New upstream version 3.2.1 Checksums-Sha1: a5c0f90afa2b46ea6ec9db05db234623aaca4a66 627024 libpdb-redo-dev_3.2.1-1_armhf.deb 84c28056b5d1bd7492eacab2a71823ab5f754773 5918740 libpdb-redo3-dbgsym_3.2.1-1_armhf.deb e3f48b21fe671d6d5431bb821a217497d532b2e7 274820 libpdb-redo3_3.2.1-1_armhf.deb a349a73a9aa0e0552da151ebc1481fff39a75f1e 7261 libpdb-redo_3.2.1-1_armhf.buildinfo Checksums-Sha256: a3bcb4798ac07e5aca07340d66973ca0576168be3bc47ff3af662c6f4f256b12 627024 libpdb-redo-dev_3.2.1-1_armhf.deb 4d34900c35b348e42779295338954ad6c0c4621acc508199bd56b4b31381410c 5918740 libpdb-redo3-dbgsym_3.2.1-1_armhf.deb b6d38aab69e382f4524725237815fbe8f9d40797a90bc4c553250a867566c0ee 274820 libpdb-redo3_3.2.1-1_armhf.deb c7fdac09f2ac47de3750da793e01c0157b43821dc8ecb98dba26e43ab41aab6f 7261 libpdb-redo_3.2.1-1_armhf.buildinfo Files: c278d8412456e639d01d7211e5cc030f 627024 libdevel optional libpdb-redo-dev_3.2.1-1_armhf.deb a8e3df83b59aeaa391024b2824c36177 5918740 debug optional libpdb-redo3-dbgsym_3.2.1-1_armhf.deb a67a368e3ab92c4151c0084ad6f8bdb5 274820 libs optional libpdb-redo3_3.2.1-1_armhf.deb 9f5874d28dc8e0dc67635a12d35db44b 7261 libs optional libpdb-redo_3.2.1-1_armhf.buildinfo Sat Feb 1 02:51:24 UTC 2025 I: diffoscope 286 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_11-9675.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.9LVVGNTy/libpdb-redo_3.2.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.9LVVGNTy/libpdb-redo_3.2.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.9LVVGNTy/libpdb-redo_3.2.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.9LVVGNTy/b1/libpdb-redo_3.2.1-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.9LVVGNTy/b2/libpdb-redo_3.2.1-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 221ms CPU time consumed: 222ms Sat Feb 1 02:51:24 UTC 2025 I: diffoscope 286 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 1 02:51:24 UTC 2025 I: libpdb-redo from trixie built successfully and reproducibly on armhf. Sat Feb 1 02:51:26 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 1 02:51:26 UTC 2025 I: Submitting 8.0K b1/libpdb-redo_3.2.1-1_armhf.buildinfo.asc Sat Feb 1 02:51:26 UTC 2025 I: Submitting 8.0K b2/libpdb-redo_3.2.1-1_armhf.buildinfo.asc Sat Feb 1 02:51:27 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 1 02:51:27 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 1 02:51:27 UTC 2025 I: Removing signed libpdb-redo_3.2.1-1_armhf.buildinfo.asc files: removed './b1/libpdb-redo_3.2.1-1_armhf.buildinfo.asc' removed './b2/libpdb-redo_3.2.1-1_armhf.buildinfo.asc'