Tue Dec 24 22:24:45 UTC 2024 I: starting to build megadepth/trixie/armhf on jenkins on '2024-12-24 22:24' Tue Dec 24 22:24:45 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_9/11269/console.log Tue Dec 24 22:24:45 UTC 2024 I: Downloading source for trixie/megadepth=1.2.0-4 --2024-12-24 22:24:45-- http://deb.debian.org/debian/pool/main/m/megadepth/megadepth_1.2.0-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2035 (2.0K) [text/prs.lines.tag] Saving to: ‘megadepth_1.2.0-4.dsc’ 0K . 100% 290M=0s 2024-12-24 22:24:45 (290 MB/s) - ‘megadepth_1.2.0-4.dsc’ saved [2035/2035] Tue Dec 24 22:24:45 UTC 2024 I: megadepth_1.2.0-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: megadepth Binary: megadepth Architecture: any Version: 1.2.0-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/ChristopherWilks/megadepth Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/megadepth Vcs-Git: https://salsa.debian.org/med-team/megadepth.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libhts-dev, libdeflate-dev, libbigwig-dev Package-List: megadepth deb science optional arch=any Checksums-Sha1: 7aef9daeed7767877da811dac182174612949199 251752 megadepth_1.2.0.orig.tar.gz 3a0ce65d432442402716816345bdee247112f5e5 8764 megadepth_1.2.0-4.debian.tar.xz Checksums-Sha256: d6b7674c644952e48f3a0ab4a54c5285ada9b44374b6e580e215ad9c9a96eaec 251752 megadepth_1.2.0.orig.tar.gz 4270c1f25640387cc3ce3bd529708a0bcfaa06f6ee6f36d8a6fae984b26b765a 8764 megadepth_1.2.0-4.debian.tar.xz Files: f6c99523e818f437ea4bde74c9baf5ab 251752 megadepth_1.2.0.orig.tar.gz 19adaaa0c00642f0cba2ed0bd4e122ed 8764 megadepth_1.2.0-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmLuhDkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF8zg//e9v/UDgvNSUXPyhP7331sFVhxfwbKMRn O4UN9xn0SdSQmYR/5sXfc+iugiZcTDnh249Xt+Th99/ZdFJkaivulAXLeU/AScmj bq0vdJPt2HOvkQ3Hva0MvJ1u9D0IcU/w9ECFLVv2VNJ6skzgjLq+q6z8RN0TyuuV JLD8NzFmrz3WK9OdKavUEv+NJjDUISYwhyxnbpwm/raB052D1+5dzy4MK6JQriOv ou2B6vLKR+GgvIKp9fHMpdooDDA6LtDbx8Xel8gh8oiw7aaSIQ4ghvG8HEb0uc7A UYgtU1fIUKruIco8zYU3L65GFRW8svb+gJ4SjEJ3E5FwhVmWjQhoW5W4dzjm0AwH JB43Xrvu6V2pFthqnQhSWx60R/4pkIZywOIHv7Pfi5Y/JiilhC7U9zqi9o5cEMpd v+3lZ1iG2VXktfAwQrnMzVgiNL32zgnXM2l1hgjkPZogEu+6XrlwxfcP/MrQERzF d/tFJk1BtwuAkGDGpWssbzO8giMKYOL4ltJl+vohoeRKg6woWWMwyDWasDX6uRvH XLcH3u86Iuxmcc9LO1rge7PC6Rb/lTjlmVgiIBoddUXDNGZ2SZrDGQGTtA1SfYXv vIGfh4jf58Q0xVn6F3XwhxRNm6EzGqs0s0lVILIyEMBwyPwD5zAKIhRQsvGRgZQb kL4A0nHrMc8= =aG9X -----END PGP SIGNATURE----- Tue Dec 24 22:24:45 UTC 2024 I: Checking whether the package is not for us Tue Dec 24 22:24:45 UTC 2024 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net. Tue Dec 24 22:24:45 UTC 2024 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net. Tue Dec 24 22:31:39 UTC 2024 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 24 10:24:56 -12 2024 I: pbuilder-time-stamp: 1735079096 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [megadepth_1.2.0-4.dsc] I: copying [./megadepth_1.2.0.orig.tar.gz] I: copying [./megadepth_1.2.0-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Aug 6 15:09:45 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./megadepth_1.2.0-4.dsc: no acceptable signature found dpkg-source: info: extracting megadepth in megadepth-1.2.0 dpkg-source: info: unpacking megadepth_1.2.0.orig.tar.gz dpkg-source: info: unpacking megadepth_1.2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying addCurlLibrary.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3951/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='f40440452db84c769ce1053aca08449f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3951' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xIFrowQ6/pbuilderrc_MAnx --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xIFrowQ6/b1 --logfile b1/build.log megadepth_1.2.0-4.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32a 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3951/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libhts-dev, libdeflate-dev, libbigwig-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19681 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libdeflate-dev; however: Package libdeflate-dev is not installed. pbuilder-satisfydepends-dummy depends on libbigwig-dev; however: Package libbigwig-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libarchive13t64{a} libbigwig-dev{a} libbigwig0t64{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 44.7 MB of archives. After unpacking 153 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-6 [864 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-3 [195 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-6 [1091 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-3 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.30.5-1 [2223 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2~rc1-2 [22.9 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 27 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.11.1-1 [303 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.30.5-1 [5365 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf comerr-dev armhf 2.1-1.47.2~rc1-2 [54.9 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-3 [1488 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libgssrpc4t64 armhf 1.21.3-3 [52.5 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libkadm5clnt-mit12 armhf 1.21.3-3 [37.0 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libkdb5-10t64 armhf 1.21.3-3 [37.1 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libkadm5srv-mit12 armhf 1.21.3-3 [46.7 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf krb5-multidev armhf 1.21.3-3 [126 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.11.1-1 [311 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libbigwig0t64 armhf 0.4.7+dfsg-3.1+b2 [25.4 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libbigwig-dev armhf 0.4.7+dfsg-3.1+b2 [34.4 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libunbound8 armhf 1.22.0-1 [539 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libgnutls-dane0t64 armhf 3.8.8-2 [440 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libgnutls-openssl27t64 armhf 3.8.8-2 [440 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libidn2-dev armhf 2.3.7-2+b1 [119 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libp11-kit-dev armhf 0.25.5-2+b1 [208 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libtasn1-6-dev armhf 4.19.0-3+b3 [93.2 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf nettle-dev armhf 3.10-1+b1 [1313 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libgnutls28-dev armhf 3.8.8-2 [1328 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libkrb5-dev armhf 1.21.3-3 [15.8 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libldap-dev armhf 2.5.18+dfsg-3+b1 [282 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libnghttp3-dev armhf 1.6.0-2 [81.8 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls-dev armhf 1.9.1-1 [21.3 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libngtcp2-dev armhf 1.9.1-1 [165 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.3.2-2 [2385 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libzstd-dev armhf 1.5.6+dfsg-1+b1 [327 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libcurl4-gnutls-dev armhf 8.11.1-1 [435 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libdeflate-dev armhf 1.22-1 [44.5 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libhts-dev armhf 1.20+ds-2 [1625 kB] Fetched 44.7 MB in 41s (1091 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19681 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_armhf.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... 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Unpacking libbrotli1:armhf (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../22-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../23-libcom-err2_1.47.2~rc1-2_armhf.deb ... Unpacking libcom-err2:armhf (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../24-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../25-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../26-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. 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Unpacking libpsl5t64:armhf (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../33-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:armhf. Preparing to unpack .../34-libssh2-1t64_1.11.1-1_armhf.deb ... Unpacking libssh2-1t64:armhf (1.11.1-1) ... Selecting previously unselected package libcurl4t64:armhf. Preparing to unpack .../35-libcurl4t64_8.11.1-1_armhf.deb ... Unpacking libcurl4t64:armhf (8.11.1-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../36-libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:armhf. Preparing to unpack .../37-libjsoncpp26_1.9.6-3_armhf.deb ... Unpacking libjsoncpp26:armhf (1.9.6-3) ... Selecting previously unselected package librhash1:armhf. 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Unpacking gettext (0.22.5-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../51-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../52-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../53-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libgssrpc4t64:armhf. Preparing to unpack .../54-libgssrpc4t64_1.21.3-3_armhf.deb ... Unpacking libgssrpc4t64:armhf (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:armhf. Preparing to unpack .../55-libkadm5clnt-mit12_1.21.3-3_armhf.deb ... Unpacking libkadm5clnt-mit12:armhf (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:armhf. Preparing to unpack .../56-libkdb5-10t64_1.21.3-3_armhf.deb ... Unpacking libkdb5-10t64:armhf (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:armhf. Preparing to unpack .../57-libkadm5srv-mit12_1.21.3-3_armhf.deb ... Unpacking libkadm5srv-mit12:armhf (1.21.3-3) ... Selecting previously unselected package krb5-multidev:armhf. Preparing to unpack .../58-krb5-multidev_1.21.3-3_armhf.deb ... Unpacking krb5-multidev:armhf (1.21.3-3) ... Selecting previously unselected package libnghttp3-9:armhf. Preparing to unpack .../59-libnghttp3-9_1.6.0-2_armhf.deb ... Unpacking libnghttp3-9:armhf (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:armhf. Preparing to unpack .../60-libngtcp2-16_1.9.1-1_armhf.deb ... Unpacking libngtcp2-16:armhf (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:armhf. Preparing to unpack .../61-libngtcp2-crypto-gnutls8_1.9.1-1_armhf.deb ... Unpacking libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:armhf. 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Selecting previously unselected package libtasn1-6-dev:armhf. Preparing to unpack .../73-libtasn1-6-dev_4.19.0-3+b3_armhf.deb ... Unpacking libtasn1-6-dev:armhf (4.19.0-3+b3) ... Selecting previously unselected package libgmpxx4ldbl:armhf. Preparing to unpack .../74-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_armhf.deb ... Unpacking libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ... Selecting previously unselected package libgmp-dev:armhf. Preparing to unpack .../75-libgmp-dev_2%3a6.3.0+dfsg-3_armhf.deb ... Unpacking libgmp-dev:armhf (2:6.3.0+dfsg-3) ... Selecting previously unselected package nettle-dev:armhf. Preparing to unpack .../76-nettle-dev_3.10-1+b1_armhf.deb ... Unpacking nettle-dev:armhf (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:armhf. Preparing to unpack .../77-libgnutls28-dev_3.8.8-2_armhf.deb ... Unpacking libgnutls28-dev:armhf (3.8.8-2) ... Selecting previously unselected package libkrb5-dev:armhf. Preparing to unpack .../78-libkrb5-dev_1.21.3-3_armhf.deb ... Unpacking libkrb5-dev:armhf (1.21.3-3) ... Selecting previously unselected package libldap-dev:armhf. Preparing to unpack .../79-libldap-dev_2.5.18+dfsg-3+b1_armhf.deb ... Unpacking libldap-dev:armhf (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libpkgconf3:armhf. Preparing to unpack .../80-libpkgconf3_1.8.1-4_armhf.deb ... Unpacking libpkgconf3:armhf (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../81-pkgconf-bin_1.8.1-4_armhf.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:armhf. Preparing to unpack .../82-pkgconf_1.8.1-4_armhf.deb ... Unpacking pkgconf:armhf (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:armhf. Preparing to unpack .../83-libnghttp2-dev_1.64.0-1_armhf.deb ... Unpacking libnghttp2-dev:armhf (1.64.0-1) ... Selecting previously unselected package libnghttp3-dev:armhf. Preparing to unpack .../84-libnghttp3-dev_1.6.0-2_armhf.deb ... Unpacking libnghttp3-dev:armhf (1.6.0-2) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:armhf. Preparing to unpack .../85-libngtcp2-crypto-gnutls-dev_1.9.1-1_armhf.deb ... Unpacking libngtcp2-crypto-gnutls-dev:armhf (1.9.1-1) ... Selecting previously unselected package libngtcp2-dev:armhf. Preparing to unpack .../86-libngtcp2-dev_1.9.1-1_armhf.deb ... Unpacking libngtcp2-dev:armhf (1.9.1-1) ... Selecting previously unselected package libpsl-dev:armhf. Preparing to unpack .../87-libpsl-dev_0.21.2-1.1+b1_armhf.deb ... Unpacking libpsl-dev:armhf (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../88-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:armhf. Preparing to unpack .../89-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/megadepth-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../megadepth_1.2.0-4_source.changes dpkg-buildpackage: info: source package megadepth dpkg-buildpackage: info: source version 1.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean if [ ! -r CMakeLists.txt ]; then ln -s CMakeLists.txt.ci CMakeLists.txt; fi #if [ ! -d htslib ]; then mkdir -p htslib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libhts.a htslib/; fi #if [ ! -d libBigWig ]; then mkdir -p libBigWig; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libBigWig.a libBigWig/; fi #if [ ! -d libdeflate ]; then mkdir -p libdeflate; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libdeflate.a libdeflate/; fi #if [ ! -d zlib ]; then mkdir -p zlib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libz.a zlib/; fi dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/megadepth-1.2.0' dh_auto_clean if [ -d zlib_ci ]; then rmdir zlib_ci; fi if [ -d libBigWig_ci ]; then rmdir libBigWig_ci; fi if [ -d libdeflate_ci ]; then rmdir libdeflate_ci; fi if [ -d htslib_ci ]; then rmdir htslib_ci; fi rm -rf htslib libbigwig libBigWig libdeflate libz zlib rm CMakeLists.txt make[1]: Leaving directory '/build/reproducible-path/megadepth-1.2.0' dh_clean debian/rules binary if [ ! -r CMakeLists.txt ]; then ln -s CMakeLists.txt.ci CMakeLists.txt; fi #if [ ! -d htslib ]; then mkdir -p htslib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libhts.a htslib/; fi #if [ ! -d libBigWig ]; then mkdir -p libBigWig; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libBigWig.a libBigWig/; fi #if [ ! -d libdeflate ]; then mkdir -p libdeflate; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libdeflate.a libdeflate/; fi #if [ ! -d zlib ]; then mkdir -p zlib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libz.a zlib/; fi dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (2.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/megadepth-1.2.0 -B/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/megadepth_dynamic.dir/build.make CMakeFiles/megadepth_dynamic.dir/depend make[3]: Entering directory '/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megadepth-1.2.0 /build/reproducible-path/megadepth-1.2.0 /build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf /build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf /build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf/CMakeFiles/megadepth_dynamic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/megadepth_dynamic.dir/build.make CMakeFiles/megadepth_dynamic.dir/build make[3]: Entering directory '/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf' [ 50%] Building CXX object CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megadepth-1.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -DMEGADEPTH_VERSION="\"`cat ../VERSION`\"" -std=gnu++11 -MD -MT CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -MF CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o.d -o CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -c /build/reproducible-path/megadepth-1.2.0/megadepth.cpp /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:113:22: warning: result of '2^63' is 61; did you mean exponentiation? [-Wxor-used-as-pow] 113 | uint64_t MAX_INT = (2^63); | ^ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:113:21: note: you can silence this warning by using a hexadecimal constant (0x2 rather than 2) 113 | uint64_t MAX_INT = (2^63); | ^ | 0x2 /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3504:26: required from here 3504 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3369:72: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] 3369 | fprintf(stderr,"total number of annotations in collapsed: %u\n",num_sizes); | ~^ ~~~~~~~~~ | | | | | long int | unsigned int | %lu /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = long int; htsFile = htsFile]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3506:24: required from here 3506 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3369:72: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] 3369 | fprintf(stderr,"total number of annotations in collapsed: %u\n",num_sizes); | ~^ ~~~~~~~~~ | | | | | long int | unsigned int | %lu /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go_bam(const char*, int, const char**, Op, htsFile*, int, bool, bool, FILE*, BGZF*, annotation_map_t*, chr2bool*, const char*, bool, strlist*, FILE*, uint64_t, uint32_t) [with T = double; htsFile = htsFile; FILE = FILE; BGZF = BGZF; annotation_map_t = robin_hood::detail::Table, std::vector >, robin_hood::hash >, std::equal_to > >; chr2bool = robin_hood::detail::Table, void, robin_hood::hash >, std::equal_to > >; strlist = std::vector; uint64_t = long long unsigned int; uint32_t = unsigned int]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3407:22: required from 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]' 3407 | return go_bam(fname_arg, argc, argv, op, bam_fh, nthreads, keep_order, has_annotation, afp, afpz, &annotations, &annotation_chrs_seen, prefix, sum_annotation, &chrm_order, auc_file, num_annotations, window_size = window_size); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3504:26: required from here 3504 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3292:20: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 3292 | fprintf(stderr,"Read %" PRIu64 " records\n",recs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ | | | size_t {aka unsigned int} /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go_bam(const char*, int, const char**, Op, htsFile*, int, bool, bool, FILE*, BGZF*, annotation_map_t*, chr2bool*, const char*, bool, strlist*, FILE*, uint64_t, uint32_t) [with T = long int; htsFile = htsFile; FILE = FILE; BGZF = BGZF; annotation_map_t = robin_hood::detail::Table, std::vector >, robin_hood::hash >, std::equal_to > >; chr2bool = robin_hood::detail::Table, void, robin_hood::hash >, std::equal_to > >; strlist = std::vector; uint64_t = long long unsigned int; uint32_t = unsigned int]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3407:22: required from 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = long int; htsFile = htsFile]' 3407 | return go_bam(fname_arg, argc, argv, op, bam_fh, nthreads, keep_order, has_annotation, afp, afpz, &annotations, &annotation_chrs_seen, prefix, sum_annotation, &chrm_order, auc_file, num_annotations, window_size = window_size); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3506:24: required from here 3506 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3292:20: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 3292 | fprintf(stderr,"Read %" PRIu64 " records\n",recs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ | | | size_t {aka unsigned int} /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'uint64_t print_array(const char*, char*, int32_t, const T2*, long int, bool, bigWigFile_t*, FILE*, bool, bool, BGZF*, hts_idx_t*, int*, FILE*, BGZF*, int, Op) [with T2 = int; uint64_t = long long unsigned int; int32_t = int; FILE = FILE; BGZF = BGZF; hts_idx_t = hts_idx_t]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:2827:64: required from 'int go_bam(const char*, int, const char**, Op, htsFile*, int, bool, bool, FILE*, BGZF*, annotation_map_t*, chr2bool*, const char*, bool, strlist*, FILE*, uint64_t, uint32_t) [with T = double; htsFile = htsFile; FILE = FILE; BGZF = BGZF; annotation_map_t = robin_hood::detail::Table, std::vector >, robin_hood::hash >, std::equal_to > >; chr2bool = robin_hood::detail::Table, void, robin_hood::hash >, std::equal_to > >; strlist = std::vector; uint64_t = long long unsigned int; uint32_t = unsigned int]' 2827 | all_auc += print_array(cov_prefix, hdr->target_name[ptid], ptid, (int32_t*) coverages.get(), chr_size, false, bwfp, cov_fh, dont_output_coverage, no_region, gcov_fh, cidx, chrms_in_cidx, afp, afpz, window_size, op); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3407:22: required from 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]' 3407 | return go_bam(fname_arg, argc, argv, op, bam_fh, nthreads, keep_order, has_annotation, afp, afpz, &annotations, &annotation_chrs_seen, prefix, sum_annotation, &chrm_order, auc_file, num_annotations, window_size = window_size); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3504:26: required from here 3504 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:1009:73: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=] 1009 | window_bytes_written = sprintf(wbuf, "%s\t%u\t%u\t%ld\n", chrm, window_start, i, wsum); | ~~^ ~~~~ | | | | long int int64_t {aka long long int} | %lld /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:1052:70: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=] 1052 | window_bytes_written = sprintf(wbuf, "%s\t%u\t%lu\t%ld\n", chrm, window_start, arr_sz, wsum); | ~~^ ~~~~ | | | | long int int64_t {aka long long int} | %lld /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'uint64_t print_array(const char*, char*, int32_t, const T2*, long int, bool, bigWigFile_t*, FILE*, bool, bool, BGZF*, hts_idx_t*, int*, FILE*, BGZF*, int, Op) [with T2 = unsigned int; uint64_t = long long unsigned int; int32_t = int; FILE = FILE; BGZF = BGZF; hts_idx_t = hts_idx_t]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:2834:65: required from 'int go_bam(const char*, int, const char**, Op, htsFile*, int, bool, bool, FILE*, BGZF*, annotation_map_t*, chr2bool*, const char*, bool, strlist*, FILE*, uint64_t, uint32_t) [with T = double; htsFile = htsFile; FILE = FILE; BGZF = BGZF; annotation_map_t = robin_hood::detail::Table, std::vector >, robin_hood::hash >, std::equal_to > >; chr2bool = robin_hood::detail::Table, void, robin_hood::hash >, std::equal_to > >; strlist = std::vector; uint64_t = long long unsigned int; uint32_t = unsigned int]' 2834 | all_auc += print_array(cov_prefix, hdr->target_name[ptid], ptid, coverages.get(), chr_size, false, bwfp, cov_fh, dont_output_coverage, no_region, gcov_fh, cidx, chrms_in_cidx, afp, afpz, window_size, op); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3407:22: required from 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]' 3407 | return go_bam(fname_arg, argc, argv, op, bam_fh, nthreads, keep_order, has_annotation, afp, afpz, &annotations, &annotation_chrs_seen, prefix, sum_annotation, &chrm_order, auc_file, num_annotations, window_size = window_size); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3504:26: required from here 3504 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:1009:73: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=] 1009 | window_bytes_written = sprintf(wbuf, "%s\t%u\t%u\t%ld\n", chrm, window_start, i, wsum); | ~~^ ~~~~ | | | | long int int64_t {aka long long int} | %lld /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:1052:70: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=] 1052 | window_bytes_written = sprintf(wbuf, "%s\t%u\t%lu\t%ld\n", chrm, window_start, arr_sz, wsum); | ~~^ ~~~~ | | | | long int int64_t {aka long long int} | %lld [100%] Linking CXX executable megadepth_dynamic /usr/bin/cmake -E cmake_link_script CMakeFiles/megadepth_dynamic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megadepth-1.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -DMEGADEPTH_VERSION="\"`cat ../VERSION`\"" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -o megadepth_dynamic -lhts -lBigWig -lcurl -ldeflate -lz make[3]: Leaving directory '/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf' [100%] Built target megadepth_dynamic make[2]: Leaving directory '/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/megadepth-1.2.0/obj-arm-linux-gnueabihf' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/megadepth-1.2.0' dh_auto_install mkdir -p debian/megadepth/usr/bin cp obj-*/megadepth_dynamic debian/megadepth/usr/bin/megadepth make[1]: Leaving directory '/build/reproducible-path/megadepth-1.2.0' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/megadepth-1.2.0' dh_installman make[1]: Leaving directory '/build/reproducible-path/megadepth-1.2.0' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'megadepth-dbgsym' in '../megadepth-dbgsym_1.2.0-4_armhf.deb'. dpkg-deb: building package 'megadepth' in '../megadepth_1.2.0-4_armhf.deb'. dpkg-genbuildinfo --build=binary -O../megadepth_1.2.0-4_armhf.buildinfo dpkg-genchanges --build=binary -O../megadepth_1.2.0-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3951 and its subdirectories I: Current time: Tue Dec 24 10:31:30 -12 2024 I: pbuilder-time-stamp: 1735079490 Tue Dec 24 22:31:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Tue Dec 24 22:31:42 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Tue Dec 24 22:33:24 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Tue Dec 24 22:33:26 UTC 2024 I: megadepth_1.2.0-4_armhf.changes: Format: 1.8 Date: Sat, 06 Aug 2022 18:13:55 +0530 Source: megadepth Binary: megadepth megadepth-dbgsym Architecture: armhf Version: 1.2.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: megadepth - computes coverage from BigWig and BAM sequencing files Closes: 1016454 Changes: megadepth (1.2.0-4) unstable; urgency=medium . * Team upload. * d/t/control : disable tests on s390 (Closes: #1016454) Checksums-Sha1: fb04d590b9fad0de4d8d60db155e960d08b0ec9b 850004 megadepth-dbgsym_1.2.0-4_armhf.deb 836c687fa46e35442d7e38b3a77a1455dfa5a9ed 7328 megadepth_1.2.0-4_armhf.buildinfo 18036c6e83b81ac8a2b35191e2ff0f79edd69210 73152 megadepth_1.2.0-4_armhf.deb Checksums-Sha256: d26bccc462abf33ca3c52dc7ff9b5c6c4064d79506485f10043f9dcda6bd276e 850004 megadepth-dbgsym_1.2.0-4_armhf.deb b4ec0152add887a98af7c6dd558cb2c1d5ac05ca6485074f0f1c50a9f8deea99 7328 megadepth_1.2.0-4_armhf.buildinfo 1a1f907ef9ecb7d6b53402efef81d4b7a7f9b6eee2841b81e26cc1fbce25d2c1 73152 megadepth_1.2.0-4_armhf.deb Files: cd1f8659c0aa3fac346504fdc159d71c 850004 debug optional megadepth-dbgsym_1.2.0-4_armhf.deb 87703dad1d08ce1d7ab01986dbe03475 7328 science optional megadepth_1.2.0-4_armhf.buildinfo 09ae899199249f646a5e7d587cb12ddc 73152 science optional megadepth_1.2.0-4_armhf.deb Tue Dec 24 22:33:28 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_9-11269.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.xIFrowQ6/megadepth_1.2.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.xIFrowQ6/megadepth_1.2.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.xIFrowQ6/megadepth_1.2.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.xIFrowQ6/b1/megadepth_1.2.0-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.xIFrowQ6/b2/megadepth_1.2.0-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.341s) 0.341s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 652ms CPU time consumed: 652ms Tue Dec 24 22:33:45 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 24 22:33:45 UTC 2024 I: megadepth from trixie built successfully and reproducibly on armhf. Tue Dec 24 22:33:47 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Dec 24 22:33:47 UTC 2024 I: Submitting 12K b1/megadepth_1.2.0-4_armhf.buildinfo.asc Tue Dec 24 22:33:48 UTC 2024 I: Submitting 12K b2/megadepth_1.2.0-4_armhf.buildinfo.asc Tue Dec 24 22:33:54 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 24 22:33:54 UTC 2024 I: Done submitting .buildinfo files. Tue Dec 24 22:33:54 UTC 2024 I: Removing signed megadepth_1.2.0-4_armhf.buildinfo.asc files: removed './b1/megadepth_1.2.0-4_armhf.buildinfo.asc' removed './b2/megadepth_1.2.0-4_armhf.buildinfo.asc'