Fri Dec 13 21:54:30 UTC 2024 I: starting to build mustang/trixie/armhf on jenkins on '2024-12-13 21:54' Fri Dec 13 21:54:30 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_30/7099/console.log Fri Dec 13 21:54:30 UTC 2024 I: Downloading source for trixie/mustang=3.2.4-1 --2024-12-13 21:54:30-- http://deb.debian.org/debian/pool/main/m/mustang/mustang_3.2.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2030 (2.0K) [text/prs.lines.tag] Saving to: ‘mustang_3.2.4-1.dsc’ 0K . 100% 320M=0s 2024-12-13 21:54:30 (320 MB/s) - ‘mustang_3.2.4-1.dsc’ saved [2030/2030] Fri Dec 13 21:54:30 UTC 2024 I: mustang_3.2.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mustang Binary: mustang, mustang-testdata Architecture: any all Version: 3.2.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://lcb.infotech.monash.edu.au/mustang/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/mustang Vcs-Git: https://salsa.debian.org/med-team/mustang.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: mustang deb science optional arch=any mustang-testdata deb science optional arch=all Checksums-Sha1: d19d24ca76b81161f781a3a468c8cf967747fb1f 147689 mustang_3.2.4.orig.tar.gz c76ce28e5c9cb4a1bf2edb8599d4139c325a6ae7 31064 mustang_3.2.4-1.debian.tar.xz Checksums-Sha256: c05e91c955f491a1fddc404a36ef963b057fd725bcc6d22ef6df1c23b26ce237 147689 mustang_3.2.4.orig.tar.gz 83e05176b677cd150f75602f08b62e0059dbe4bcede2e24d238a2d1c6145f306 31064 mustang_3.2.4-1.debian.tar.xz Files: f1a57f7c4765c7cfc874b7ec96646f1f 147689 mustang_3.2.4.orig.tar.gz c8e3f8ec8a3561acda55a455df98dcf2 31064 mustang_3.2.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOowVoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGbjg/9H2PrHXU5PuUfBUemJmnkHLti7uW/hqBO IeWdCgRG+XuR+fk6nXI9QAqc6uBZWYWRdwphlwffsmQYynbFhCwHm5np4lVqbE1u YJ5YQw/MeLxhwCis+i1AZOZGPA7jVUwsXRc9+otyc8ekBi3zsy8hnz+a7XA3YUOr nV48MWyjNjbS7gNmi1RNNyeBqejD8dKHtAbOmy9jaZ9mp4WCu4+kNv2xCZRspeu+ GiWuDEWkFJ4c/laGSYXruh34ZyZAV5hCd3tc7VY2m1T/t1EamcDWa3UmPmhJ2cLz 9uOqp2mEXNHp3e5+R25sVDokrQkri1JZXKbrMRi4U9dzizzi0WZYtjpYXlVWYNth 1IQB5NvokC91rEREH5rrw0J497ftibr8Ep3IPkdkN16DfXW/QXjzfyTZHdA5sW51 df3MN2+IIDOg0Wirv/WEgGZ++kn68TG1F1A3yry0ILkgikDJrc8xBcX6mjKfLW9k q+pLqf3KJfZPkUdydLIb2hDBGUZIsWKwZLhSDRdN8WzQEZlO32X7VTgwXzJiMllw /o8oT3z19CpKQ6XFrl1PvkTRlAU7Y85MA1wX76wOMO0m33YSrXXX2ZZzmzsuFK2T HhhoiddDshn1+9DlAO30K3eTW13V+Yg5hLS1TeF/FVqR6WldJMMc3IWw4I2WWV23 f90q/HxFF+Y= =v9bj -----END PGP SIGNATURE----- Fri Dec 13 21:54:30 UTC 2024 I: Checking whether the package is not for us Fri Dec 13 21:54:30 UTC 2024 I: Starting 1st build on remote node ff64a-armhf-rb.debian.net. Fri Dec 13 21:54:30 UTC 2024 I: Preparing to do remote build '1' on ff64a-armhf-rb.debian.net. Fri Dec 13 22:00:45 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 13 09:54:39 -12 2024 I: pbuilder-time-stamp: 1734126879 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mustang_3.2.4-1.dsc] I: copying [./mustang_3.2.4.orig.tar.gz] I: copying [./mustang_3.2.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 25 21:32:10 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mustang_3.2.4-1.dsc: no acceptable signature found dpkg-source: info: extracting mustang in mustang-3.2.4 dpkg-source: info: unpacking mustang_3.2.4.orig.tar.gz dpkg-source: info: unpacking mustang_3.2.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03-test_zf-cchh.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12036/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='b1e9ee1fc9a742c19d8338a69995e45f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12036' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vim981K5/pbuilderrc_cx9L --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vim981K5/b1 --logfile b1/build.log mustang_3.2.4-1.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/12036/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-6 [1091 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Fetched 19.1 MB in 2s (9298 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-6_armhf.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-12_armhf.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../23-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mustang-3.2.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mustang_3.2.4-1_source.changes dpkg-buildpackage: info: source package mustang dpkg-buildpackage: info: source version 3.2.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' rm -f obj/*.o rm -f bin/mustang-3.2* make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j5 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/globals.cpp -o ./obj/globals.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/CmdLineParser_2.cpp -o ./obj/CmdLineParser.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/distmat.cpp -o ./obj/distmat.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/sse_RK.cpp -o ./obj/sse_RK.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/read_structures.cpp -o ./obj/read_structures.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/primary_lib_gen.cpp -o ./obj/primary_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/pairwise_global_structalgn.cpp -o ./obj/pairwise_global_structalgn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/pdb_ripper_2.cpp -o ./obj/pdb_ripper.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/merge_global_local_libs.cpp -o ./obj/merge_global_local_libs.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/ew_2.cpp -o ./obj/ew.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/refine_pairalgn_2.cpp -o ./obj/refine_pairalgn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/superpose_weightedRMS.cpp -o ./obj/superpose_weightedRMS.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/superpose_2.cpp -o ./obj/superpose_2.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/jacobi.cpp -o ./obj/jacobi.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/3D_manip_functions.cpp -o ./obj/3D_manip_functions.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/extended_lib_gen_3.cpp -o ./obj/extended_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/progress_align_3.cpp -o ./obj/progress_align.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/neighbour_joining.cpp -o ./obj/neighbour_joining.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/upgma.cpp -o ./obj/upgma.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/superpose_on_core_2.cpp -o ./obj/superpose_on_core.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/multiple_superposition.cpp -o ./obj/multiple_superposition.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/output_algn.cpp -o ./obj/output_algn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ./src/main.cpp -o ./obj/main.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o bin/mustang-3.2.4 ./obj/globals.o ./obj/CmdLineParser.o ./obj/distmat.o ./obj/sse_RK.o ./obj/read_structures.o ./obj/primary_lib_gen.o ./obj/pairwise_global_structalgn.o ./obj/pdb_ripper.o ./obj/merge_global_local_libs.o ./obj/ew.o ./obj/refine_pairalgn.o ./obj/superpose_weightedRMS.o ./obj/superpose_2.o ./obj/jacobi.o ./obj/3D_manip_functions.o ./obj/extended_lib_gen.o ./obj/progress_align.o ./obj/neighbour_joining.o ./obj/upgma.o ./obj/superpose_on_core.o ./obj/multiple_superposition.o ./obj/output_algn.o ./obj/main.o make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' install -D -m755 bin/mustang-3.2* debian/mustang/usr/bin/mustang make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' dh_compress -X.pdb make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mustang' in '../mustang_3.2.4-1_armhf.deb'. dpkg-deb: building package 'mustang-testdata' in '../mustang-testdata_3.2.4-1_all.deb'. dpkg-deb: building package 'mustang-dbgsym' in '../mustang-dbgsym_3.2.4-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../mustang_3.2.4-1_armhf.buildinfo dpkg-genchanges --build=binary -O../mustang_3.2.4-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12036 and its subdirectories I: Current time: Fri Dec 13 10:00:38 -12 2024 I: pbuilder-time-stamp: 1734127238 Fri Dec 13 22:00:47 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Fri Dec 13 22:00:47 UTC 2024 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Fri Dec 13 22:02:26 UTC 2024 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Fri Dec 13 22:02:29 UTC 2024 I: mustang_3.2.4-1_armhf.changes: Format: 1.8 Date: Sun, 25 Dec 2022 22:30:48 +0100 Source: mustang Binary: mustang mustang-dbgsym mustang-testdata Architecture: armhf all Version: 3.2.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mustang - multiple structural alignment of proteins mustang-testdata - multiple structural alignment of proteins, test data Changes: mustang (3.2.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 931b362b77a997dcc3b8840a0c7d7d7c2f326336 313348 mustang-dbgsym_3.2.4-1_armhf.deb 3639acd832d85c18c7b811301fb1e115bb321038 45248 mustang-testdata_3.2.4-1_all.deb de365c04a9f0f898fb02933bfa0ed0b749254e95 5124 mustang_3.2.4-1_armhf.buildinfo 9d049ed3dfc57fab16ade1faf4038549058bd5d9 95180 mustang_3.2.4-1_armhf.deb Checksums-Sha256: 78fe13d169f375963cd905c315897c55de433bf8fbca4b4e03a155101a745d94 313348 mustang-dbgsym_3.2.4-1_armhf.deb 3e8db35c4b39313041017d1604915e24e6f42186a40603feb2951aa2742d22f6 45248 mustang-testdata_3.2.4-1_all.deb 4b5b54a6d2897ca5b660f73697de1ae09d9e904eecc82bf047b9cf644b8c7f25 5124 mustang_3.2.4-1_armhf.buildinfo 300c94ba0f3a7dccfccf4935afadb87e8ba93a42cec999ad04b12555df4398f4 95180 mustang_3.2.4-1_armhf.deb Files: aa274d7fd1a5d490e8cd8741a475af90 313348 debug optional mustang-dbgsym_3.2.4-1_armhf.deb 56e89426184a0200df148b3c2575a922 45248 science optional mustang-testdata_3.2.4-1_all.deb ecdca82aa5e7c7d459005334429aec01 5124 science optional mustang_3.2.4-1_armhf.buildinfo 7937a384f5d15da9a8f6795c08799888 95180 science optional mustang_3.2.4-1_armhf.deb Fri Dec 13 22:02:30 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_30-7099.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vim981K5/mustang_3.2.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vim981K5/mustang_3.2.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vim981K5/mustang_3.2.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vim981K5/b1/mustang_3.2.4-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.vim981K5/b2/mustang_3.2.4-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.377s) 0.377s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 737ms CPU time consumed: 697ms Fri Dec 13 22:02:31 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Fri Dec 13 22:02:31 UTC 2024 I: mustang from trixie built successfully and reproducibly on armhf. Fri Dec 13 22:02:33 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Dec 13 22:02:33 UTC 2024 I: Submitting 8.0K b1/mustang_3.2.4-1_armhf.buildinfo.asc Fri Dec 13 22:02:33 UTC 2024 I: Submitting 8.0K b2/mustang_3.2.4-1_armhf.buildinfo.asc Fri Dec 13 22:02:34 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Dec 13 22:02:34 UTC 2024 I: Done submitting .buildinfo files. Fri Dec 13 22:02:34 UTC 2024 I: Removing signed mustang_3.2.4-1_armhf.buildinfo.asc files: removed './b1/mustang_3.2.4-1_armhf.buildinfo.asc' removed './b2/mustang_3.2.4-1_armhf.buildinfo.asc'