Tue Feb 18 04:08:59 UTC 2025 I: starting to build parasail/trixie/armhf on jenkins on '2025-02-18 04:08' Tue Feb 18 04:08:59 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_20/8296/console.log Tue Feb 18 04:08:59 UTC 2025 I: Downloading source for trixie/parasail=2.6.2+dfsg-2 --2025-02-18 04:09:00-- http://deb.debian.org/debian/pool/main/p/parasail/parasail_2.6.2%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2358 (2.3K) [text/prs.lines.tag] Saving to: ‘parasail_2.6.2+dfsg-2.dsc’ 0K .. 100% 368M=0s 2025-02-18 04:09:00 (368 MB/s) - ‘parasail_2.6.2+dfsg-2.dsc’ saved [2358/2358] Tue Feb 18 04:09:00 UTC 2025 I: parasail_2.6.2+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parasail Binary: libparasail-dev, libparasail8, parasail Architecture: any Version: 2.6.2+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra , Étienne Mollier Homepage: https://github.com/jeffdaily/parasail Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/parasail Vcs-Git: https://salsa.debian.org/med-team/parasail.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, libhts-dev, libsimde-dev Package-List: libparasail-dev deb libdevel optional arch=any libparasail8 deb libs optional arch=any parasail deb science optional arch=any Checksums-Sha1: 5630897fe1324df197787af36bb2347de4243aca 1145232 parasail_2.6.2+dfsg.orig.tar.xz 58e974ccce8097910c314374e545479b1d2c4e44 50920 parasail_2.6.2+dfsg-2.debian.tar.xz Checksums-Sha256: 6d522d5d3a465ea5ad90fcd585f2223168992c8bbc0a5d0fab0878d16abaf83a 1145232 parasail_2.6.2+dfsg.orig.tar.xz 9c4ce5babe36d6f63bf9d5d34806175fd80a4624c062296cb18dc60ae5a9a679 50920 parasail_2.6.2+dfsg-2.debian.tar.xz Files: 556f8816581efe9da9f4f34cd1ce5fbc 1145232 parasail_2.6.2+dfsg.orig.tar.xz b3af2d92a8f1908e938211d329c00c94 50920 parasail_2.6.2+dfsg-2.debian.tar.xz Dgit: e6e8ee698781710dc03ec24e09cbe1eac6133a5c debian archive/debian/2.6.2+dfsg-2 https://git.dgit.debian.org/parasail -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAma+/IsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdodEg/9EBewJ8F4OLerVcwx6IC4IbkS74Kz PYGbz3qsZPqfQhq8Iv4RAGvlFtur/GJbTj/JOlayV8XlfpCzKscmd+Vv7CP98JV0 wQ/Djn9VQpUh1jKvTgswzlhC1KQa4BRh3M9IgD+4PvmWXFF/r9VVURWi1MX7Jkvy kRjgJ7pHsbHXFYu16t31w0uBe6cV1acosHhE0T46pNnHSJcuJvB4iK3WpgDZJqqI O+DBs2qFEW9LylrvAVIPmARTDplNOKxz6WDBYkOwS2QUyIleCet2PiRTzWvECDs7 C9cLaCx28vek1vfeW5QiyRtVhXtm0PFxm4HhDUcHYGWjEArpzhpZPDRS+631AKkZ 1/d71IfazIdBG3TUwlPUY5Ey91Jzz83qcO6bigGYa65V0vA9w6S5oQj0C28GKXfo GgxhRuqoT3rGvwSzy3aGXGTCck/WmVp947SApNljVg3CPLLjzsjZ1CtfhU55sWmC keijpbduAXYXsHNH/EWl0LbaosDHlwOFPwAvl2uCo1vNAmq1vD8u8CwB6yuL5p5n 1O5ArjZaM/hGv65711hvdo4HVJ8z+P2/9JOIHvU4OgqnDxrfc8qA3fKtUfb5fAv4 5n0l50HSfsCc+WTDtYMKx6a4wRQmEdpjuZBKyrjFYwO9Zmq3n0xTFssZprpnwoEN WMA3iuH1CCqFanY= =znf1 -----END PGP SIGNATURE----- Tue Feb 18 04:09:00 UTC 2025 I: Checking whether the package is not for us Tue Feb 18 04:09:00 UTC 2025 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Tue Feb 18 04:09:00 UTC 2025 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Tue Feb 18 04:12:54 UTC 2025 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 17 16:09:05 -12 2025 I: pbuilder-time-stamp: 1739851745 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parasail_2.6.2+dfsg-2.dsc] I: copying [./parasail_2.6.2+dfsg.orig.tar.xz] I: copying [./parasail_2.6.2+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./parasail_2.6.2+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting parasail in parasail-2.6.2+dfsg dpkg-source: info: unpacking parasail_2.6.2+dfsg.orig.tar.xz dpkg-source: info: unpacking parasail_2.6.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-system-libs.patch dpkg-source: info: applying nonx86 dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3630/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='5985389f3b3b4d6ab5496184a3e7c872' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3630' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ci3f0jEI/pbuilderrc_HIME --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ci3f0jEI/b1 --logfile b1/build.log parasail_2.6.2+dfsg-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-31-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3630/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libhts-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19534 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 38.3 MB of archives. After unpacking 132 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-3 [84.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf comerr-dev armhf 2.1-1.47.2-1 [55.1 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf d-shlibs all 0.109 [11.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-3 [539 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 25 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf debhelper all 13.24.1 [920 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-4 [30.3 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-4 [75.8 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 37 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-4 [285 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-4 [116 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libgssrpc4t64 armhf 1.21.3-4 [52.6 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libkadm5clnt-mit12 armhf 1.21.3-4 [37.5 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libkdb5-10t64 armhf 1.21.3-4 [37.3 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libkadm5srv-mit12 armhf 1.21.3-4 [47.4 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf krb5-multidev armhf 1.21.3-4 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.7-1 [20.3 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.20.0-2 [44.4 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.9-2 [1382 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8+b1 [18.6 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8+b1 [50.6 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libldap2 armhf 2.6.9+dfsg-1 [167 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.12.0+git20250209.89ed161+ds-1 [316 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libunbound8 armhf 1.22.0-1+b1 [539 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libgnutls-dane0t64 armhf 3.8.9-2 [446 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libgnutls-openssl27t64 armhf 3.8.9-2 [446 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libidn2-dev armhf 2.3.7-2+b1 [119 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libp11-kit-dev armhf 0.25.5-3 [208 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libtasn1-6-dev armhf 4.20.0-2 [93.4 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf nettle-dev armhf 3.10-1+b1 [1313 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libgnutls28-dev armhf 3.8.9-2 [1337 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libkrb5-dev armhf 1.21.3-4 [15.9 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libldap-dev armhf 2.6.9+dfsg-1 [286 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libnghttp3-dev armhf 1.6.0-2 [81.8 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls-dev armhf 1.9.1-1 [21.3 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libngtcp2-dev armhf 1.9.1-1 [165 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.4.0-2 [2431 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libzstd-dev armhf 1.5.6+dfsg-2 [326 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libcurl4-gnutls-dev armhf 8.12.0+git20250209.89ed161+ds-1 [440 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.23-1+b1 [36.7 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libdeflate-dev armhf 1.23-1+b1 [44.8 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.21+ds-1 [408 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libhts-dev armhf 1.21+ds-1 [1657 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libsimde-dev all 0.8.2-2 [467 kB] Fetched 38.3 MB in 1s (60.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19534 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. 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Preparing to unpack .../88-libcurl4-gnutls-dev_8.12.0+git20250209.89ed161+ds-1_armhf.deb ... Unpacking libcurl4-gnutls-dev:armhf (8.12.0+git20250209.89ed161+ds-1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../89-libdeflate0_1.23-1+b1_armhf.deb ... Unpacking libdeflate0:armhf (1.23-1+b1) ... Selecting previously unselected package libdeflate-dev:armhf. Preparing to unpack .../90-libdeflate-dev_1.23-1+b1_armhf.deb ... Unpacking libdeflate-dev:armhf (1.23-1+b1) ... Selecting previously unselected package libhtscodecs2:armhf. Preparing to unpack .../91-libhtscodecs2_1.6.1-1_armhf.deb ... Unpacking libhtscodecs2:armhf (1.6.1-1) ... Selecting previously unselected package libhts3t64:armhf. Preparing to unpack .../92-libhts3t64_1.21+ds-1_armhf.deb ... Unpacking libhts3t64:armhf (1.21+ds-1) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../93-liblzma-dev_5.6.3-1+b1_armhf.deb ... Unpacking liblzma-dev:armhf (5.6.3-1+b1) ... Selecting previously unselected package libhts-dev:armhf. Preparing to unpack .../94-libhts-dev_1.21+ds-1_armhf.deb ... Unpacking libhts-dev:armhf (1.21+ds-1) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../95-libsimde-dev_0.8.2-2_all.deb ... Unpacking libsimde-dev (0.8.2-2) ... Setting up libhtscodecs2:armhf (1.6.1-1) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libsimde-dev (0.8.2-2) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-6) ... Setting up libzstd-dev:armhf (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up libdeflate0:armhf (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Setting up libcom-err2:armhf (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-4) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:armhf (1.22.0-1+b1) ... Setting up libpkgconf3:armhf (1.8.1-4) ... Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ... Setting up comerr-dev:armhf (2.1-1.47.2-1) ... Setting up libunistring5:armhf (1.3-1) ... Setting up libssl-dev:armhf (3.4.0-2) ... Setting up autopoint (0.23.1-1) ... Setting up d-shlibs (0.109) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:armhf (1.21.3-4) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.6.0-2) ... Setting up libnghttp3-dev:armhf (1.6.0-2) ... Setting up liblzma-dev:armhf (5.6.3-1+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:armhf (3.4.7-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libtasn1-6:armhf (4.20.0-2) ... Setting up libngtcp2-16:armhf (1.9.1-1) ... Setting up libkrb5-3:armhf (1.21.3-4) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libtasn1-6-dev:armhf (4.20.0-2) ... Setting up libdeflate-dev:armhf (1.23-1+b1) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:armhf (2.6.9+dfsg-1) ... Setting up libbrotli-dev:armhf (1.1.0-2+b6) ... Setting up libbz2-dev:armhf (1.0.8-6) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-3) ... Setting up nettle-dev:armhf (3.10-1+b1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:armhf (2.3.7-2+b1) ... Setting up libngtcp2-dev:armhf (1.9.1-1) ... Setting up pkgconf:armhf (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:armhf (2.6.9+dfsg-1) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up libgssapi-krb5-2:armhf (1.21.3-4) ... Setting up libssh2-1-dev:armhf (1.11.1-1) ... Setting up libidn2-dev:armhf (2.3.7-2+b1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libp11-kit-dev:armhf (0.25.5-3) ... Setting up libgnutls30t64:armhf (3.8.9-2) ... Setting up libgnutls-openssl27t64:armhf (3.8.9-2) ... Setting up libnghttp2-dev:armhf (1.64.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:armhf (3.8.9-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:armhf (1.21.3-4) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Setting up libkadm5clnt-mit12:armhf (1.21.3-4) ... Setting up libgnutls28-dev:armhf (3.8.9-2) ... Setting up libkdb5-10t64:armhf (1.21.3-4) ... Setting up libcurl3t64-gnutls:armhf (8.12.0+git20250209.89ed161+ds-1) ... Setting up debhelper (13.24.1) ... Setting up libngtcp2-crypto-gnutls-dev:armhf (1.9.1-1) ... Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5srv-mit12:armhf (1.21.3-4) ... Setting up libhts3t64:armhf (1.21+ds-1) ... Setting up krb5-multidev:armhf (1.21.3-4) ... Setting up libkrb5-dev:armhf (1.21.3-4) ... Setting up libcurl4-gnutls-dev:armhf (8.12.0+git20250209.89ed161+ds-1) ... Setting up libhts-dev:armhf (1.21+ds-1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/parasail-2.6.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parasail_2.6.2+dfsg-2_source.changes dpkg-buildpackage: info: source package parasail dpkg-buildpackage: info: source version 2.6.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:13: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:13: the top level configure.ac:109: warning: The macro 'AC_PROG_CC_C99' is obsolete. configure.ac:109: You should run autoupdate. ./lib/autoconf/c.m4:1662: AC_PROG_CC_C99 is expanded from... configure.ac:109: the top level configure.ac:109: installing 'build-aux/compile' configure.ac:78: installing 'build-aux/config.guess' configure.ac:78: installing 'build-aux/config.sub' configure.ac:70: installing 'build-aux/install-sh' configure.ac:70: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' blhc: ignore-line-regexp: C(C|XX) : \.+ .* dh_auto_configure -- --disable-neon \ --enable-shared \ --disable-static ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-neon --enable-shared --disable-static checking whether make supports nested variables... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking xargs -n works... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf configure: configure: C compiler configure: checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 14.2.0 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking for poll.h... yes checking for unistd.h... (cached) yes checking for windows.h... no checking for sys/mman.h... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict__ checking size of int... 4 checking for struct __stat64... no checking for gcc option to enable large file support... none needed checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for size_t... yes checking for OpenMP flag of C compiler... -fopenmp checking for __builtin_cpu_init... no checking for __builtin_cpu_supports... no checking for SSE2 support... no checking for SSE2 _mm_set1_epi64x... no checking for SSE2 _mm_set_epi64x... no checking for SSE4.1 support... no checking for SSE4.1 _mm_insert_epi64... no checking for SSE4.1 _mm_extract_epi64... no checking for AVX2 support... no checking for AVX2 _mm256_set1_epi64x... no checking for AVX2 _mm256_set_epi64x... no checking for AVX2 _mm256_insert_epi64... no checking for AVX2 _mm256_insert_epi32... no checking for AVX2 _mm256_insert_epi16... no checking for AVX2 _mm256_insert_epi8... no checking for AVX2 _mm256_extract_epi64... no checking for AVX2 _mm256_extract_epi32... no checking for AVX2 _mm256_extract_epi16... no checking for AVX2 _mm256_extract_epi8... no checking for AVX512F support... no checking for AVX512BW support... no checking for AVX512VBMI support... no checking for xgetbv... no checking for AltiVec support... no checking for _aligned_malloc... no checking for aligned_alloc... yes checking for filelength... no checking for memalign... yes checking for memset... yes checking for poll... yes checking for posix_memalign... yes checking for getopt... yes checking for SetUnhandledExceptionFilter... no checking for _fstat64... no checking for _stat64... no checking for int64_t literal suffix... unknown checking for GetSystemTimeAsFileTime... no checking for clock_get_time... no checking for library containing clock_gettime... none required checking for clock_gettime CLOCK_MONOTONIC... no checking for clock_gettime CLOCK_REALTIME... no checking for library containing sqrt... -lm checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for grep that handles long lines and -e... /usr/bin/grep checking whether C compiler supports visibility flag... -fvisibility=hidden configure: configure: C++ compiler configure: checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for C++ compiler vendor... gnu checking for C++ compiler version... 14.2.0 checking for OpenMP flag of C++ compiler... -fopenmp checking for variadic macros... yes configure: configure: Libtool setup configure: checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking our pkgconfig libname... parasail-1 checking our pkgconfig version... 2.6.2 checking our pkgconfig_libdir... ${libdir}/pkgconfig expanded our pkgconfig_libdir... /usr/lib/arm-linux-gnueabihf/pkgconfig checking our pkgconfig_libfile... parasail-1.pc checking our package / suffix... Pairwise Sequence Alignment Library / checking our pkgconfig description... Pairwise Sequence Alignment Library checking our pkgconfig requires... checking our pkgconfig ext libs... -lparasail checking our pkgconfig cppflags... checking our pkgconfig ldflags... noninstalled pkgconfig -L /build/reproducible-path/parasail-2.6.2+dfsg/src/.libs noninstalled pkgconfig -I /build/reproducible-path/parasail-2.6.2+dfsg/. checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing parasail-1.pc commands config.status: creating parasail-1.pc.in config.status: creating parasail-1.pc config.status: creating parasail-1-uninstalled.pc config.status: creating parasail-1-uninstalled.sh -=-=-=-=-=-=-=-=-=-= Configuration Complete =-=-=-=-=-=-=-=-=-=-=- Configuration summary : parasail version : .................... 2.6.2 Host CPU : ............................ arm Host Vendor : ......................... unknown Host OS : ............................. linux-gnueabihf Toolchain : CC : .................................. gcc (gnu, 14.2.0) CXX : ................................. g++ (gnu, 14.2.0) Flags : CFLAGS : .............................. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic CXXFLAGS : ............................ -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security CPPFLAGS : ............................ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS : ............................. -Wl,-z,relro -Wl,-z,now LIBS : ................................ Intrinsics : SSE2 : ................................ auto (no) SSE2_CFLAGS : ......................... not supported SSE4.1 : .............................. auto (no) SSE41_CFLAGS : ........................ not supported AVX2 : ................................ auto (no) AVX2_CFLAGS : ......................... not supported AVX512 : .............................. auto (no) AVX512F_CFLAGS : ...................... not supported AVX512BW_CFLAGS : ..................... not supported AVX512VBMI_CFLAGS : ................... not supported Altivec : ............................. auto (no) ALTIVEC_CFLAGS : ...................... not supported ARM NEON : ............................ no NEON_CFLAGS : ......................... EXTRA_NEON_CFLAGS : ................... Dependencies : OPENMP_CFLAGS : ....................... -fopenmp OPENMP_CXXFLAGS : ..................... -fopenmp CLOCK_LIBS : .......................... MATH_LIBS : ........................... -lm Z_CFLAGS : ............................ Z_LIBS : .............................. -lz Installation directories : Program directory : ................... /usr/bin Library directory : ................... /usr/lib/arm-linux-gnueabihf Include directory : ................... /usr/include Pkgconfig directory : ................. /usr/lib/arm-linux-gnueabihf/pkgconfig Compiling some other packages against parasail may require the addition of '/usr/lib/arm-linux-gnueabihf/pkgconfig' to the PKG_CONFIG_PATH environment variable. make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o apps/parasail_stats.o apps/parasail_stats.c g++ -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o apps/parasail_aligner-parasail_aligner.o `test -f 'apps/parasail_aligner.cpp' || echo './'`apps/parasail_aligner.cpp gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/getMemorySize.o contrib/getMemorySize.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/cigar.c -fPIC -DPIC -o src/.libs/libparasail_la-cigar.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cpuid.lo `test -f 'src/cpuid.c' || echo './'`src/cpuid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. 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--mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-striped_unwind.lo `test -f 'src/striped_unwind.c' || echo './'`src/striped_unwind.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/striped_unwind.c -fPIC -DPIC -o src/.libs/libparasail_la-striped_unwind.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-traceback.lo `test -f 'src/traceback.c' || echo './'`src/traceback.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/traceback.c -fPIC -DPIC -o src/.libs/libparasail_la-traceback.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC 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src/.libs/libparasail_novec_la-sw.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall 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-I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_trace.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace.lo `test -f 'src/sg_trace.c' || echo './'`src/sg_trace.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_trace.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace.lo `test -f 'src/sw_trace.c' || echo './'`src/sw_trace.c libtool: compile: gcc 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'./'`src/nw_trace_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_trace_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o 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-I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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src/.libs/libparasail_novec_table_la-sg_scan.o src/.libs/libparasail_novec_table_la-sw_scan.o src/.libs/libparasail_novec_table_la-nw_banded.o src/.libs/libparasail_novec_table_la-nw_stats.o src/.libs/libparasail_novec_table_la-sg_stats.o src/.libs/libparasail_novec_table_la-sw_stats.o src/.libs/libparasail_novec_table_la-nw_stats_scan.o src/.libs/libparasail_novec_table_la-sg_stats_scan.o src/.libs/libparasail_novec_table_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_table.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_table.la" && ln -s "../libparasail_novec_table.la" "libparasail_novec_table.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo libtool: link: ar cr .libs/libparasail_novec_rowcol.a src/.libs/libparasail_novec_rowcol_la-nw.o src/.libs/libparasail_novec_rowcol_la-sg.o src/.libs/libparasail_novec_rowcol_la-sw.o src/.libs/libparasail_novec_rowcol_la-nw_scan.o src/.libs/libparasail_novec_rowcol_la-sg_scan.o src/.libs/libparasail_novec_rowcol_la-sw_scan.o src/.libs/libparasail_novec_rowcol_la-nw_banded.o src/.libs/libparasail_novec_rowcol_la-nw_stats.o src/.libs/libparasail_novec_rowcol_la-sg_stats.o src/.libs/libparasail_novec_rowcol_la-sw_stats.o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_rowcol.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_rowcol.la" && ln -s "../libparasail_novec_rowcol.la" "libparasail_novec_rowcol.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/libsais.la contrib/sais-lite-lcp/sais.lo libtool: link: ar cr tests/.libs/libsais.a contrib/sais-lite-lcp/.libs/sais.o libtool: link: ranlib tests/.libs/libsais.a libtool: link: ( cd "tests/.libs" && rm -f "libsais.la" && ln -s "../libsais.la" "libsais.la" 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"libparasail.so.8") libtool: link: (cd ".libs" && rm -f "libparasail.so" && ln -s "libparasail.so.8.1.2" "libparasail.so") libtool: link: ( cd ".libs" && rm -f "libparasail.la" && ln -s "../libparasail.la" "libparasail.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o apps/parasail_stats apps/parasail_stats.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_stats apps/parasail_stats.o ./.libs/libparasail.so -lm -lz libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o ./.libs/libparasail.so -lm -lz tests/.libs/libsais.a -fopenmp make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_auto_test make -j3 test "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make tests/traceback tests/test_align tests/test_basic tests/test_gcups tests/test_io tests/test_isa tests/test_matrix tests/test_pssm tests/test_query tests/test_sw_dispatch tests/test_verify tests/test_verify_tables tests/test_verify_rowcols tests/test_verify_traces tests/test_verify_cigars tests/test_12 tests/test_64 tests/test_p29 tests/test_p59 tests/libsais.la make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: 'tests/libsais.la' is up to date. gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/traceback.o tests/traceback.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_align.o tests/test_align.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_basic.o tests/test_basic.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_gcups.o tests/test_gcups.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_io.o tests/test_io.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_isa.o tests/test_isa.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_matrix.o tests/test_matrix.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_pssm.o tests/test_pssm.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_query-test_query.o `test -f 'tests/test_query.c' || echo './'`tests/test_query.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_sw_dispatch.o tests/test_sw_dispatch.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify-test_verify.o `test -f 'tests/test_verify.c' || echo './'`tests/test_verify.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_tables-test_verify_tables.o `test -f 'tests/test_verify_tables.c' || echo './'`tests/test_verify_tables.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_rowcols-test_verify_rowcols.o `test -f 'tests/test_verify_rowcols.c' || echo './'`tests/test_verify_rowcols.c tests/test_verify.c: In function 'main': tests/test_verify.c:310:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 310 | int do_neon = 1; | ^~~~~~~ tests/test_verify.c:309:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 309 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify.c:308:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 308 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify.c:307:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 307 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify.c:306:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 306 | int do_sse2 = 1; | ^~~~~~~ tests/test_verify_tables.c: In function 'main': tests/test_verify_tables.c:328:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 328 | int do_neon = 1; | ^~~~~~~ tests/test_verify_tables.c:327:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 327 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_tables.c:326:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 326 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_tables.c:325:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 325 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_tables.c:324:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 324 | int do_sse2 = 1; | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_cigars-test_verify_cigars.o `test -f 'tests/test_verify_cigars.c' || echo './'`tests/test_verify_cigars.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_12.o tests/test_12.c tests/test_verify_traces.c: In function 'main': tests/test_verify_traces.c:239:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 239 | int do_neon = 1; | ^~~~~~~ tests/test_verify_traces.c:238:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 238 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_traces.c:237:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 237 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_traces.c:236:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 236 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_traces.c:235:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 235 | int do_sse2 = 1; | ^~~~~~~ tests/test_verify_cigars.c: In function 'main': tests/test_verify_cigars.c:311:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 311 | int do_neon = 1; | ^~~~~~~ tests/test_verify_cigars.c:310:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 310 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_cigars.c:309:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 309 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_cigars.c:308:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 308 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_cigars.c:307:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 307 | int do_sse2 = 1; | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_64.o tests/test_64.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p59.o tests/test_p59.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/traceback tests/traceback.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_align tests/test_align.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_basic tests/test_basic.o libparasail.la In file included from tests/test_p59.c:33: tests/test_p59.h: In function 'main': tests/test_p59.h:513:1: warning: string length '51025' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] 513 | "GAAAGTGACAGGGAGAATGGAACCA"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ tests/test_p59.h:1026:1: warning: string length '51024' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] 1026 | "AAAGTGACAGGGAGAATGGAACCA"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ tests/test_p59.c:39:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] 39 | printf("s1_len=%d limit=%ld\n", s1_len, s1Limit); | ~~^ ~~~~~~~ | | | | long int int64_t {aka long long int} | %lld tests/test_p59.c:40:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] 40 | printf("s2_len=%d limit=%ld\n", s2_len, s2Limit); | ~~^ ~~~~~~~ | | | | long int int64_t {aka long long int} | %lld libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_gcups tests/test_gcups.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_basic tests/test_basic.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_io tests/test_io.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_isa tests/test_isa.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_gcups tests/test_gcups.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_io tests/test_io.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_matrix tests/test_matrix.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_isa tests/test_isa.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_pssm tests/test_pssm.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_matrix tests/test_matrix.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_query tests/test_query-test_query.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_pssm tests/test_pssm.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_query tests/test_query-test_query.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify tests/test_verify-test_verify.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_sw_dispatch tests/test_sw_dispatch.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify tests/test_verify-test_verify.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_12 tests/test_12.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_traces tests/test_verify_traces-test_verify_traces.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_12 tests/test_12.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_64 tests/test_64.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p29 tests/test_p29.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p59 tests/test_p59.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_64 tests/test_64.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p29 tests/test_p29.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p59 tests/test_p59.o ./.libs/libparasail.so -lm -lz make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make check-TESTS make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[3]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' PASS: tests/test_basic PASS: tests/test_isa PASS: tests/test_verify.test ============================================================================ Testsuite summary for Pairwise Sequence Alignment Library 2.6.2 ============================================================================ # TOTAL: 3 # PASS: 3 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/parasail-2.6.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libparasail.so.8.1.2 /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8.1.2 libtool: install: (cd /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.2 libparasail.so.8 || { rm -f libparasail.so.8 && ln -s libparasail.so.8.1.2 libparasail.so.8; }; }) libtool: install: (cd /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.2 libparasail.so || { rm -f libparasail.so && ln -s libparasail.so.8.1.2 libparasail.so; }; }) libtool: install: /usr/bin/install -c .libs/libparasail.lai /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin' libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c apps/.libs/parasail_aligner /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin/parasail_aligner libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c apps/.libs/parasail_stats /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin/parasail_stats /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 parasail.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/blosum100.h parasail/matrices/blosum30.h parasail/matrices/blosum35.h parasail/matrices/blosum40.h parasail/matrices/blosum45.h parasail/matrices/blosum50.h parasail/matrices/blosum55.h parasail/matrices/blosum60.h parasail/matrices/blosum62.h parasail/matrices/blosum65.h parasail/matrices/blosum70.h parasail/matrices/blosum75.h parasail/matrices/blosum80.h parasail/matrices/blosum85.h parasail/matrices/blosum90.h parasail/matrices/blosum_map.h parasail/matrices/blosumn.h parasail/matrices/dnafull.h parasail/matrices/nuc44.h parasail/matrices/pam10.h parasail/matrices/pam100.h parasail/matrices/pam110.h parasail/matrices/pam120.h parasail/matrices/pam130.h parasail/matrices/pam140.h parasail/matrices/pam150.h parasail/matrices/pam160.h parasail/matrices/pam170.h parasail/matrices/pam180.h parasail/matrices/pam190.h parasail/matrices/pam20.h parasail/matrices/pam200.h parasail/matrices/pam210.h parasail/matrices/pam220.h parasail/matrices/pam230.h parasail/matrices/pam240.h parasail/matrices/pam250.h parasail/matrices/pam260.h parasail/matrices/pam270.h parasail/matrices/pam280.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail' /usr/bin/install -c -m 644 parasail/cpuid.h parasail/io.h parasail/function_lookup.h parasail/matrix_lookup.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/pam290.h parasail/matrices/pam30.h parasail/matrices/pam300.h parasail/matrices/pam310.h parasail/matrices/pam320.h parasail/matrices/pam330.h parasail/matrices/pam340.h parasail/matrices/pam350.h parasail/matrices/pam360.h parasail/matrices/pam370.h parasail/matrices/pam380.h parasail/matrices/pam390.h parasail/matrices/pam40.h parasail/matrices/pam400.h parasail/matrices/pam410.h parasail/matrices/pam420.h parasail/matrices/pam430.h parasail/matrices/pam440.h parasail/matrices/pam450.h parasail/matrices/pam460.h parasail/matrices/pam470.h parasail/matrices/pam480.h parasail/matrices/pam490.h parasail/matrices/pam50.h parasail/matrices/pam500.h parasail/matrices/pam60.h parasail/matrices/pam70.h parasail/matrices/pam80.h parasail/matrices/pam90.h parasail/matrices/pam_map.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 parasail-1.pc '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_install cp `find .libs -name "libparasail*.a" | head -n1` \ debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.a d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" \ usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libparasail-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libparasail8/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.a debian/libparasail-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so debian/libparasail-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8 debian/libparasail8/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8.1.2 debian/libparasail8/usr/lib/arm-linux-gnueabihf PKGDEV=libparasail-dev PKGSHL=libparasail8 install -d -m 755 debian/libparasail-dev/usr mv debian/tmp/usr/include debian/libparasail-dev/usr install -d -m 755 debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/pkgconfig rm debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/libparasail.a dh_install -p libparasail-dev .libs/*.a usr/lib/arm-linux-gnueabihf find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_fixperms find debian -name "*.c" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libparasail-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libparasail-dev' in '../libparasail-dev_2.6.2+dfsg-2_armhf.deb'. dpkg-deb: building package 'libparasail8-dbgsym' in '../libparasail8-dbgsym_2.6.2+dfsg-2_armhf.deb'. dpkg-deb: building package 'parasail-dbgsym' in '../parasail-dbgsym_2.6.2+dfsg-2_armhf.deb'. dpkg-deb: building package 'parasail' in '../parasail_2.6.2+dfsg-2_armhf.deb'. dpkg-deb: building package 'libparasail8' in '../libparasail8_2.6.2+dfsg-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../parasail_2.6.2+dfsg-2_armhf.buildinfo dpkg-genchanges --build=binary -O../parasail_2.6.2+dfsg-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3630 and its subdirectories I: Current time: Mon Feb 17 16:12:38 -12 2025 I: pbuilder-time-stamp: 1739851958 Tue Feb 18 04:12:56 UTC 2025 I: 1st build successful. Starting 2nd build on remote node wbq0-armhf-rb.debian.net. Tue Feb 18 04:12:56 UTC 2025 I: Preparing to do remote build '2' on wbq0-armhf-rb.debian.net. Tue Feb 18 04:30:28 UTC 2025 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. Tue Feb 18 04:30:30 UTC 2025 I: parasail_2.6.2+dfsg-2_armhf.changes: Format: 1.8 Date: Fri, 16 Aug 2024 09:03:57 +0200 Source: parasail Binary: libparasail-dev libparasail8 libparasail8-dbgsym parasail parasail-dbgsym Architecture: armhf Version: 2.6.2+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libparasail-dev - Development heaaders and static libraries for parasail libparasail8 - Lib with various pairwise sequence alignment algorithms parasail - Aligner based on libparasail Closes: 1075361 Changes: parasail (2.6.2+dfsg-2) unstable; urgency=medium . * gcc-14.patch: new: fix incompatible pointer types. (Closes: #1075361) * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: dd84511fb1994496dc67529e1d2c62d38cabff3a 180656 libparasail-dev_2.6.2+dfsg-2_armhf.deb adc2747a7536d4a1e45d678a806755a971bb8215 1033884 libparasail8-dbgsym_2.6.2+dfsg-2_armhf.deb 76e3f1bf3fca5b8ef56eea6dd2a0a51179d084e2 362764 libparasail8_2.6.2+dfsg-2_armhf.deb 1408629f616cb69236fe11d5a327e6330eb60649 302988 parasail-dbgsym_2.6.2+dfsg-2_armhf.deb bfec087c6c41ac07fee055c00382b691d567ab91 8107 parasail_2.6.2+dfsg-2_armhf.buildinfo ada5b7808c4b8f8385543105357a8489e8a9be7c 58808 parasail_2.6.2+dfsg-2_armhf.deb Checksums-Sha256: 0ef33ffaf295723f140c48dc90a96f1b2939d4d23e099e5ab788c26b83fb2f5b 180656 libparasail-dev_2.6.2+dfsg-2_armhf.deb 2b4cf069d99818808500cb7e82298ed13a01c0693fd3d711198101fe1c1b576b 1033884 libparasail8-dbgsym_2.6.2+dfsg-2_armhf.deb d5d19ed88f446899c54dbd354ff44c04710b6402a75ee25d2f57802509bb89da 362764 libparasail8_2.6.2+dfsg-2_armhf.deb fa5e18f5c5619145977e797f2003994556db629772571a12bac7978ac7b8c67a 302988 parasail-dbgsym_2.6.2+dfsg-2_armhf.deb fc7bd95922f87c31ccda8a4ae32d14d0202e36fd9be36d3af656dd6b974fbb6c 8107 parasail_2.6.2+dfsg-2_armhf.buildinfo 578e5ea7225b61e87517350183c54e4e48fc1789055cd1cd57302e1debac260a 58808 parasail_2.6.2+dfsg-2_armhf.deb Files: 217f89ed8cd4e82c3b1f45c4a45202b0 180656 libdevel optional libparasail-dev_2.6.2+dfsg-2_armhf.deb f4ff52f19db1f3487f33ea41e31ea7d7 1033884 debug optional libparasail8-dbgsym_2.6.2+dfsg-2_armhf.deb 3c15b1f81b2595c784d0e3d50b084f42 362764 libs optional libparasail8_2.6.2+dfsg-2_armhf.deb 1fc86779bb5200a1fcb022597b01a386 302988 debug optional parasail-dbgsym_2.6.2+dfsg-2_armhf.deb cacbf8d302bed371543275a41a566b71 8107 science optional parasail_2.6.2+dfsg-2_armhf.buildinfo 77a008925bedd2c2e4482d81e37bd513 58808 science optional parasail_2.6.2+dfsg-2_armhf.deb Tue Feb 18 04:30:31 UTC 2025 I: diffoscope 288 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_20-8296.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Ci3f0jEI/parasail_2.6.2+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Ci3f0jEI/parasail_2.6.2+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Ci3f0jEI/parasail_2.6.2+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Ci3f0jEI/b1/parasail_2.6.2+dfsg-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.Ci3f0jEI/b2/parasail_2.6.2+dfsg-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 212ms CPU time consumed: 214ms Tue Feb 18 04:30:33 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Tue Feb 18 04:30:33 UTC 2025 I: parasail from trixie built successfully and reproducibly on armhf. Tue Feb 18 04:30:34 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Feb 18 04:30:34 UTC 2025 I: Submitting 12K b1/parasail_2.6.2+dfsg-2_armhf.buildinfo.asc Tue Feb 18 04:30:35 UTC 2025 I: Submitting 12K b2/parasail_2.6.2+dfsg-2_armhf.buildinfo.asc Tue Feb 18 04:30:37 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Feb 18 04:30:37 UTC 2025 I: Done submitting .buildinfo files. Tue Feb 18 04:30:37 UTC 2025 I: Removing signed parasail_2.6.2+dfsg-2_armhf.buildinfo.asc files: removed './b1/parasail_2.6.2+dfsg-2_armhf.buildinfo.asc' removed './b2/parasail_2.6.2+dfsg-2_armhf.buildinfo.asc'