Sun Feb 9 19:10:30 UTC 2025 I: starting to build physamp/trixie/armhf on jenkins on '2025-02-09 19:10' Sun Feb 9 19:10:30 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_31/13300/console.log Sun Feb 9 19:10:30 UTC 2025 I: Downloading source for trixie/physamp=1.1.0-5 --2025-02-09 19:10:30-- http://deb.debian.org/debian/pool/main/p/physamp/physamp_1.1.0-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2001 (2.0K) [text/prs.lines.tag] Saving to: ‘physamp_1.1.0-5.dsc’ 0K . 100% 317M=0s 2025-02-09 19:10:30 (317 MB/s) - ‘physamp_1.1.0-5.dsc’ saved [2001/2001] Sun Feb 9 19:10:30 UTC 2025 I: physamp_1.1.0-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: physamp Binary: physamp Architecture: any Version: 1.1.0-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Julien Dutheil Homepage: https://jydu.github.io/physamp/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/physamp Vcs-Git: https://salsa.debian.org/med-team/physamp.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev Package-List: physamp deb science optional arch=any Checksums-Sha1: 3ff8524b2bcf0be31ff60857253cdabce2677b90 241845 physamp_1.1.0.orig.tar.gz 9e2d2e5a6f4f5fba98c5faa5da7b6690b948456f 3924 physamp_1.1.0-5.debian.tar.xz Checksums-Sha256: 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8 241845 physamp_1.1.0.orig.tar.gz 72f3d5405dce25cd5e95eeb62495d26c9f9d373c2252abb0e689e62607cfa630 3924 physamp_1.1.0-5.debian.tar.xz Files: 70c3d25a3ab2c937495c502a4dbddcdd 241845 physamp_1.1.0.orig.tar.gz 148c4f13409444bd89a47093b4659167 3924 physamp_1.1.0-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYBu6kACgkQPCZ2P2xn 5uKLvQ//QFnxHc29lid3rkaM1hrEslQY2ecaKc/a107DYYwNACx3kzXU9V2h+92F mOL0ov9LxIDHPqaJ8L32AAgUPRX3UgGGrXO3xGLWTo6YvmQE9SmiZSQijNpB2u4q bD0O+YEQg0v/3YvDDlb1t1dse8wBmtuJN8j+4QlnEmCWwua+JMHdnYXGvDLpwx+4 1Deu6VkjaPWqwcqjotj7X4sCw7FrooICbXuz0oRUXm6zOOtWp2HbY8OBHGShmxx8 Cq9TIKMK8eX4Py+wJDMRlG8UE7UHrsIUQDhQis2G58lMmGuQpLqnpnoXHe4hFeJG diiFN1R4+iz/8uh+v9EhmJS2Txav/uy4zhW2OO35EkURg+PBpKpAic08oGKh+hAV WQTWh1GO0NG6JBNOhqCp+Agdi6sMCzAfj0OR8OkdpxLTDC4KdtL6OjJjeE8ekAbP 72ffz63TQ4IWWKPXALarrrcSALdhljoqAsYJ+lJojuZa/JHzakSHtV27xYxDS4ym LSnBr87UDwaSajwnhjXyfk6xV22AOTlHekLn5UQHuaLMHbIS8EJxCWD22OpT7kMa RBfr6RO3c4KtivXPOrP39/GuaKvOWz6u4AVNAM79LjM0EJ6RetYh0OO0UqX1TtXR yHpRXK0TTYEoCtDYT51nJGKiAjR3iquOY6jgpRheCBw4SYFL954= =00XP -----END PGP SIGNATURE----- Sun Feb 9 19:10:30 UTC 2025 I: Checking whether the package is not for us Sun Feb 9 19:10:30 UTC 2025 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Sun Feb 9 19:10:30 UTC 2025 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Sun Feb 9 19:13:43 UTC 2025 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 9 07:10:37 -12 2025 I: pbuilder-time-stamp: 1739128237 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [physamp_1.1.0-5.dsc] I: copying [./physamp_1.1.0.orig.tar.gz] I: copying [./physamp_1.1.0-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./physamp_1.1.0-5.dsc: unsupported subcommand dpkg-source: info: extracting physamp in physamp-1.1.0 dpkg-source: info: unpacking physamp_1.1.0.orig.tar.gz dpkg-source: info: unpacking physamp_1.1.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27738/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='09f9fae6f70a46b1b7f56456e50d061d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27738' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eccikuxW/pbuilderrc_6XO7 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eccikuxW/b1 --logfile b1/build.log physamp_1.1.0-5.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-31-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27738/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19565 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev; however: Package libbpp-phyl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl12t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 76 newly installed, 0 to remove and 0 not upgraded. Need to get 43.1 MB of archives. After unpacking 190 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-7 [56.3 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-7 [866 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-2 [84.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libtext-charwidth-perl armhf 0.04-11+b4 [9128 B] Get: 14 http://deb.debian.org/debian trixie/main armhf libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 15 http://deb.debian.org/debian trixie/main armhf ucf all 3.0049 [42.5 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf automake all 1:1.17-3 [862 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf autopoint all 0.23.1-1 [770 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.31.5-1 [2267 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-4 [30.3 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-4 [75.8 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 30 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-4 [285 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-4 [116 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8+b1 [18.6 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8+b1 [50.6 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libldap2 armhf 2.6.9+dfsg-1 [167 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.11.1-1+b1 [304 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.31.5-1 [5911 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-3 [539 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 57 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf debhelper all 13.24.1 [920 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libbpp-core4t64 armhf 2.4.1-13+b1 [533 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libbpp-core-dev armhf 2.4.1-13+b1 [957 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libbpp-seq12t64 armhf 2.4.1-13 [454 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libbpp-phyl12t64 armhf 2.4.1-11+b1 [1472 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libbpp-seq-dev armhf 2.4.1-13 [747 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libbpp-phyl-dev armhf 2.4.1-11+b1 [3096 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libtext-unidecode-perl all 1.30-3 [101 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libxml-libxml-perl armhf 2.0207+dfsg+really+2.0134-5+b1 [298 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf tex-common all 6.18 [32.5 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf texinfo-lib armhf 7.1.1-1+b1 [209 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf texinfo all 7.1.1-1 [1753 kB] Fetched 43.1 MB in 1s (36.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19565 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_armhf.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_armhf.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Setting up libffi8:armhf (3.4.6-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:armhf (4.19.0-3+b3) ... Setting up cmake-data (3.31.5-1) ... Setting up librhash1:armhf (1.4.5-1) ... Setting up libkrb5-3:armhf (1.21.3-4) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:armhf (2.6.9+dfsg-1) ... Setting up libbpp-seq12t64:armhf (2.4.1-13) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up libbpp-seq-dev:armhf (2.4.1-13) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libbpp-phyl12t64:armhf (2.4.1-11+b1) ... Setting up libidn2-0:armhf (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-phyl-dev:armhf (2.4.1-11+b1) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up libgssapi-krb5-2:armhf (1.21.3-4) ... Setting up ucf (3.0049) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:armhf (3.7.4-1.1) ... Setting up libgnutls30t64:armhf (3.8.8-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcurl4t64:armhf (8.11.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up texinfo (7.1.1-1) ... Setting up cmake (3.31.5-1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/physamp-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../physamp_1.1.0-5_source.changes dpkg-buildpackage: info: source package physamp dpkg-buildpackage: info: source version 1.1.0-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:6 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- Found makeinfo as '/usr/bin/makeinfo': 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (1.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/physamp /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/physamp/CMakeFiles/bppalnoptim.dir/DependInfo.cmake "--color=" make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/physamp /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/physamp/CMakeFiles/bppphysamp.dir/DependInfo.cmake "--color=" make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/docs /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/docs /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/docs/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' [ 12%] Building CXX object physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -MF CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o.d -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp [ 25%] Building CXX object physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -MF CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o.d -o CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp [ 37%] Generating info page cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/docs && /usr/bin/makeinfo --no-split -o /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/docs/physamp.info /build/reproducible-path/physamp-1.1.0/docs/physamp.texi [ 50%] Compressing info page cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/docs && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/docs/physamp.info > /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/docs/physamp.info.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' [ 50%] Built target info make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/man /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/man /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' [ 62%] Compressing manpage bppalnoptim.1 cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppalnoptim.1 > /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/man/bppalnoptim.1.gz [ 75%] Compressing manpage bppphysamp.1 cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppphysamp.1 > /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/man/bppphysamp.1.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' [ 75%] Built target man /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp: In function 'int main(int, char**)': /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp:444:13: warning: catching polymorphic type 'class bpp::SequenceNotFoundException' by value [-Wcatch-value=] 444 | } catch(SequenceNotFoundException) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /usr/include/Bpp/Numeric/VectorTools.h:54, from /usr/include/Bpp/Numeric/DataTable.h:43, from /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:34: /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Index; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:25: /usr/include/c++/14/bits/stl_algobase.h: In function '_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred]': /usr/include/c++/14/bits/stl_algobase.h:2165:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2165 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2165:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from 'int main(int, char**)' at /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:151:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from 'int main(int, char**)' at /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:151:7: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function '_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = Test]', inlined from 'int main(int, char**)' at /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:197:16: /usr/include/c++/14/bits/stl_algo.h:832:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 832 | return std::__remove_if(__first, __last, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 833 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = Test]', inlined from 'int main(int, char**)' at /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:230:16: /usr/include/c++/14/bits/stl_algo.h:832:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 832 | return std::__remove_if(__first, __last, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 833 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Linking CXX executable bppphysamp cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppphysamp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppphysamp.dir/link.d CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -o bppphysamp /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' [ 87%] Built target bppphysamp [100%] Linking CXX executable bppalnoptim cd /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnoptim.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppalnoptim.dir/link.d CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -o bppalnoptim /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' [100%] Built target bppalnoptim make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/physamp/ cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/physamp-1.1.0/debian/physamp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/bin/bppalnoptim -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/bin/bppphysamp -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/info/physamp.info.gz -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppalnoptim.1.gz -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppphysamp.1.gz make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-arm-linux-gnueabihf' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'physamp-dbgsym' in '../physamp-dbgsym_1.1.0-5_armhf.deb'. dpkg-deb: building package 'physamp' in '../physamp_1.1.0-5_armhf.deb'. dpkg-genbuildinfo --build=binary -O../physamp_1.1.0-5_armhf.buildinfo dpkg-genchanges --build=binary -O../physamp_1.1.0-5_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27738 and its subdirectories I: Current time: Sun Feb 9 07:13:29 -12 2025 I: pbuilder-time-stamp: 1739128409 Sun Feb 9 19:13:45 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ff4a-armhf-rb.debian.net. Sun Feb 9 19:13:45 UTC 2025 I: Preparing to do remote build '2' on ff4a-armhf-rb.debian.net. Sun Feb 9 19:16:11 UTC 2025 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net. Sun Feb 9 19:16:13 UTC 2025 I: physamp_1.1.0-5_armhf.changes: Format: 1.8 Date: Mon, 25 Mar 2024 18:59:54 +0100 Source: physamp Binary: physamp physamp-dbgsym Architecture: armhf Version: 1.1.0-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: physamp - sample sequence alignment corresponding to phylogeny Changes: physamp (1.1.0-5) unstable; urgency=medium . * Team upload. * d/patches/unforce-cxxflags.patch: merge with upstream's flags, especially -std=c++11; forward our patch to upstream. * r/rules: enable full hardening * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: e9248564505a1997e5c2695350cb888816a1cf21 1292692 physamp-dbgsym_1.1.0-5_armhf.deb c55c52565a8169facb4af7fefa46d5a8875202be 6252 physamp_1.1.0-5_armhf.buildinfo ffceed5e0573b54727c67f96bddb696950a3b30f 176528 physamp_1.1.0-5_armhf.deb Checksums-Sha256: e3c58c5f5d64533c9dde52b5389e7a564638fabc58d8262e7a82370773e2ee4e 1292692 physamp-dbgsym_1.1.0-5_armhf.deb 953c84ac9b534ec86e267153d22896f61262686f98336ea76f86d9c42f60d4a3 6252 physamp_1.1.0-5_armhf.buildinfo 53ab51070acc4014d4ab6e02f102fe918c82cd517d39026473f4accdfa62e3d8 176528 physamp_1.1.0-5_armhf.deb Files: a8e08f4800e91fcb4a6e1752b6249717 1292692 debug optional physamp-dbgsym_1.1.0-5_armhf.deb 992d7bd80ef1314878c2c43618eb1a74 6252 science optional physamp_1.1.0-5_armhf.buildinfo c5a132380e9266b59115de52f4b277c3 176528 science optional physamp_1.1.0-5_armhf.deb Sun Feb 9 19:16:14 UTC 2025 I: diffoscope 288 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_31-13300.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eccikuxW/physamp_1.1.0-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eccikuxW/physamp_1.1.0-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eccikuxW/physamp_1.1.0-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eccikuxW/b1/physamp_1.1.0-5_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.eccikuxW/b2/physamp_1.1.0-5_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 221ms CPU time consumed: 222ms Sun Feb 9 19:16:15 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Sun Feb 9 19:16:15 UTC 2025 I: physamp from trixie built successfully and reproducibly on armhf. Sun Feb 9 19:16:16 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Feb 9 19:16:16 UTC 2025 I: Submitting 8.0K b1/physamp_1.1.0-5_armhf.buildinfo.asc Sun Feb 9 19:16:17 UTC 2025 I: Submitting 8.0K b2/physamp_1.1.0-5_armhf.buildinfo.asc Sun Feb 9 19:16:18 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Feb 9 19:16:18 UTC 2025 I: Done submitting .buildinfo files. Sun Feb 9 19:16:18 UTC 2025 I: Removing signed physamp_1.1.0-5_armhf.buildinfo.asc files: removed './b1/physamp_1.1.0-5_armhf.buildinfo.asc' removed './b2/physamp_1.1.0-5_armhf.buildinfo.asc'