Sat Dec 28 07:48:43 UTC 2024 I: starting to build python-pyani/trixie/armhf on jenkins on '2024-12-28 07:48' Sat Dec 28 07:48:43 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_15/12392/console.log Sat Dec 28 07:48:43 UTC 2024 I: Downloading source for trixie/python-pyani=0.2.12-3 --2024-12-28 07:48:43-- http://deb.debian.org/debian/pool/main/p/python-pyani/python-pyani_0.2.12-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2404 (2.3K) [text/prs.lines.tag] Saving to: ‘python-pyani_0.2.12-3.dsc’ 0K .. 100% 343M=0s 2024-12-28 07:48:43 (343 MB/s) - ‘python-pyani_0.2.12-3.dsc’ saved [2404/2404] Sat Dec 28 07:48:44 UTC 2024 I: python-pyani_0.2.12-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyani Binary: python3-pyani Architecture: any Version: 0.2.12-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/widdowquinn/pyani Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pyani Vcs-Git: https://salsa.debian.org/med-team/python-pyani.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython , python3-matplotlib , python3-pandas , python3-scipy , python3-seaborn , mummer , ncbi-blast+ , python3-pytest Package-List: python3-pyani deb python optional arch=any Checksums-Sha1: 5a3411c6f6c3fbc237492c0d756f19b1a6ea4589 49038533 python-pyani_0.2.12.orig.tar.gz 60d43d56d1f100769c150f7b8c87e11e6c92add9 11404 python-pyani_0.2.12-3.debian.tar.xz Checksums-Sha256: 31bac50843d3af54cf273a4388f4f87bffb0688082e4e3179ea1640aa208626d 49038533 python-pyani_0.2.12.orig.tar.gz 811e72aaf7f67bc5f2c6d5538f527ad610ffab339278526ff33cae6826100ea6 11404 python-pyani_0.2.12-3.debian.tar.xz Files: be120c6027f0fb7e14bbefeff7cb9abb 49038533 python-pyani_0.2.12.orig.tar.gz d629542deb83329b306d5d71bdcf7805 11404 python-pyani_0.2.12-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVhBpURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHF/w//YPO8mJUlMjl5j9etCPFv1LFe+v7Z1dZU cWw5oq3j380r9kwJPM5PLuWjXWYVeew2ky46KYi65hjjOUHc3IEo/nfBOjfBAR5G 07ozcQSxJ53ymG6s691QYKz6eL6HtMuSZFqJdRHS/x8/fI9pymQpnLzP6SWNK0xe tKV/6khTAeyxzwMdSRHMGuN9mRPJ3LPhkYhWoPpZ/P+qbE+wOBFENGorpyF04qaN fJ6QdhNzrAr6gkOPo0sqRA8fS5n37364pf15leBzGXs91QATsIEJC3WEymf8g4LV ntUeaas816ex0cfFEU2sOFf2m7IIPJl1ExbPkHF2lvk1USudHwpPeBP3cSHYKMqi PSx11nRB7ksy9eGIbFRnVnXcrqayKctjiZCmFxqCNEPa5Mm4h0PgtKPVZ5EZfw4V NxS/Sm96ECSeZxkvMWDVMPAeiHJE8R+xzZqVSqetOode0On20dzoelw19OmdWWnP OfzeRL50mM62w8pFnTHgxtGHoS/gv8bclRf67ZhPHPziBa6idgSg3P1a4Ax/Lrpa mnnMZCaoWk+nvwkdu2BU0orv5DUMaYtJ4yT+5IbOzmtnfa8+Gt7Lknn3ryYhDXXD 2JRKzITGjlcNWpOd3BGfSfbjbMAJXuhP+MtLNeoMhybg9grQbSKuLP1R2uvTVCH7 e30pLfbRf04= =DsHD -----END PGP SIGNATURE----- Sat Dec 28 07:48:44 UTC 2024 I: Checking whether the package is not for us Sat Dec 28 07:48:44 UTC 2024 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net. Sat Dec 28 07:48:44 UTC 2024 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net. Sat Dec 28 08:16:45 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 27 19:49:02 -12 2024 I: pbuilder-time-stamp: 1735372142 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyani_0.2.12-3.dsc] I: copying [./python-pyani_0.2.12.orig.tar.gz] I: copying [./python-pyani_0.2.12-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 24 20:24:53 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.12-3.dsc: no acceptable signature found dpkg-source: info: extracting python-pyani in python-pyani-0.2.12 dpkg-source: info: unpacking python-pyani_0.2.12.orig.tar.gz dpkg-source: info: unpacking python-pyani_0.2.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pytest.patch dpkg-source: info: applying dataframe_sort.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18438/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='bd984bb82cbf4efd95f38e2923e1eafc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18438' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.N0oYbWIo/pbuilderrc_L5ni --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.N0oYbWIo/b1 --logfile b1/build.log python-pyani_0.2.12-3.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64b 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/18438/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libnghttp2-14{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsigsegv2{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1t64{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} mummer{a} ncbi-blast+{a} ncbi-data{a} netbase{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 191 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After unpacking 608 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-6 [69.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-6 [146 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libsigsegv2 armhf 2.14-1+b2 [33.6 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf gawk armhf 1:5.2.1-2+b2 [630 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.8-3 [802 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.8-3 [1794 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.8-1 [26.9 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-4 [256 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2~rc1-2 [22.9 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 16 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1824 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.8-3 [677 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.8-1 [9792 B] Get: 24 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.8-1 [27.9 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libpython3.13-minimal armhf 3.13.1-2 [844 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf python3.13-minimal armhf 3.13.1-2 [1838 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf sgml-base all 1.31 [15.4 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-3 [195 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-6 [1091 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-3 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [934 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.44-3 [263 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libfontenc1 armhf 1:1.1.8-1+b1 [20.8 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf xfonts-utils armhf 1:7.7+7 [84.2 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 54 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1+b1 [318 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1+b1 [371 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.10-2 [337 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b3 [25.0 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libxft2 armhf 2.3.6-1+b3 [46.5 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libxss1 armhf 1:1.2.3-1+b2 [16.4 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libtk8.6 armhf 8.6.15-1 [697 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7 [481 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf blt armhf 2.5.3+dfsg-7 [6024 B] Get: 68 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 74 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-3 [1488 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 88 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 75.6.0-1 [222 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 75.6.0-1 [720 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20241217 [113 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf fonts-lyx all 2.4.2.1-1 [190 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-4 [111 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.44.0-3 [164 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.17.0-2+b1 [114 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.17.0-2+b1 [105 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.2-2 [443 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.4-1 [140 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.16-1 [24.6 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-8 [263 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.82.4-1 [1327 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 10.1.0-1 [418 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libimagequant0 armhf 2.18.0-1+b2 [30.5 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3+b1 [145 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 8.1.3-3 [30.4 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-4 [1828 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b2 [25.6 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf liblcms2-2 armhf 2.16-2 [131 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf liblmdb0 armhf 0.9.31-1+b2 [38.1 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libmbedcrypto16 armhf 3.6.2-3 [320 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libmbedx509-7 armhf 3.6.2-3 [142 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libmbedtls21 armhf 3.6.2-3 [220 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libopenjp2-7 armhf 2.5.0-2+b4 [179 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libpython3.12t64 armhf 3.12.8-3 [1849 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libpython3.12-dev armhf 3.12.8-3 [3812 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.12.8-1 [10.1 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libpython3.13-stdlib armhf 3.13.1-2 [1846 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libpython3.13 armhf 3.13.1-2 [1870 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libpython3.13-dev armhf 3.13.1-2 [3801 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libpython3-all-dev armhf 3.12.8-1 [1068 B] Get: 132 http://deb.debian.org/debian trixie/main armhf libqhull-r8.0 armhf 2020.2-6+b2 [220 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libraqm0 armhf 0.10.2-1 [11.6 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.4.0-0.1+b1 [111 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.4.0-0.1+b1 [266 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf libwebpdemux2 armhf 1.4.0-0.1+b1 [110 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf libwebpmux3 armhf 1.4.0-0.1+b1 [120 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf libxslt1.1 armhf 1.1.35-1.1+b1 [212 kB] Get: 141 http://deb.debian.org/debian trixie/main armhf mummer armhf 3.23+dfsg-8 [627 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf ncbi-blast+ armhf 2.16.0+ds-6+b1 [13.4 MB] Get: 144 http://deb.debian.org/debian trixie/main armhf python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf python3.13 armhf 3.13.1-2 [740 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.12.8-1 [1048 B] Get: 147 http://deb.debian.org/debian trixie/main armhf python3.12-dev armhf 3.12.8-3 [506 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf python3-dev armhf 3.12.8-1 [26.1 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf python3.13-dev armhf 3.13.1-2 [505 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf python3-all-dev armhf 3.12.8-1 [1068 B] Get: 151 http://deb.debian.org/debian trixie/main armhf python3-attr all 24.2.0-1 [68.4 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.26.4+ds-12 [3676 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf python3.12-tk armhf 3.12.8-3 [109 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf python3.13-tk armhf 3.13.1-2 [99.7 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf python3-tk armhf 3.13.1-1 [9464 B] Get: 157 http://deb.debian.org/debian trixie/main armhf python3-pil.imagetk armhf 10.4.0-1+b1 [79.3 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf python3-pil armhf 10.4.0-1+b1 [478 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf python3-cairo armhf 1.26.1-2+b1 [120 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf python3-freetype all 2.5.1-1 [89.3 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf python3-rlpycairo all 0.3.0-3 [9904 B] Get: 162 http://deb.debian.org/debian trixie/main armhf python3-reportlab all 4.2.5-1 [1117 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf xml-core all 0.19 [20.1 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf w3c-sgml-lib all 1.3-3 [273 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf python3-biopython armhf 1.84+dfsg-4+b1 [1625 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf python3-brotli armhf 1.1.0-2+b6 [302 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf python3-contourpy armhf 1.3.1-1 [217 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf python3-cycler all 0.12.1-1 [9496 B] Get: 169 http://deb.debian.org/debian trixie/main armhf python3-dateutil all 2.9.0-3 [79.3 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 171 http://deb.debian.org/debian trixie/main armhf python3-tz all 2024.2-1 [31.0 kB] Get: 172 http://deb.debian.org/debian trixie/main armhf python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 173 http://deb.debian.org/debian trixie/main armhf python3-fs all 2.4.16-5.1 [95.2 kB] Get: 174 http://deb.debian.org/debian trixie/main armhf python3-lxml armhf 5.3.0-1+b1 [1468 kB] Get: 175 http://deb.debian.org/debian trixie/main armhf python3-lz4 armhf 4.4.0+dfsg-1 [23.9 kB] Get: 176 http://deb.debian.org/debian trixie/main armhf python3-scipy armhf 1.14.1-3 [17.8 MB] Get: 177 http://deb.debian.org/debian trixie/main armhf python3-mpmath all 1.3.0-1 [419 kB] Get: 178 http://deb.debian.org/debian trixie/main armhf python3-sympy all 1.13.3-1 [4147 kB] Get: 179 http://deb.debian.org/debian trixie/main armhf python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 180 http://deb.debian.org/debian trixie/main armhf unicode-data all 15.1.0-1 [8547 kB] Get: 181 http://deb.debian.org/debian trixie/main armhf python3-fonttools armhf 4.55.0-3 [1529 kB] Get: 182 http://deb.debian.org/debian trixie/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 183 http://deb.debian.org/debian trixie/main armhf python3-kiwisolver armhf 1.4.7-2+b1 [64.9 kB] Get: 184 http://deb.debian.org/debian trixie/main armhf python3-pyparsing all 3.1.2-1 [146 kB] Get: 185 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 186 http://deb.debian.org/debian trixie/main armhf python3-matplotlib armhf 3.8.3-3+b1 [5579 kB] Get: 187 http://deb.debian.org/debian trixie/main armhf python3-pandas-lib armhf 2.2.3+dfsg-5+b1 [6440 kB] Get: 188 http://deb.debian.org/debian trixie/main armhf python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 189 http://deb.debian.org/debian trixie/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 190 http://deb.debian.org/debian trixie/main armhf python3-pytest all 8.3.3-1 [249 kB] Get: 191 http://deb.debian.org/debian trixie/main armhf python3-seaborn all 0.13.2-4 [215 kB] Fetched 152 MB in 6s (26.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../libreadline8t64_8.2-6_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-6) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../libsigsegv2_2.14-1+b2_armhf.deb ... Unpacking libsigsegv2:armhf (2.14-1+b2) ... Setting up readline-common (8.2-6) ... Setting up libreadline8t64:armhf (8.2-6) ... Setting up libsigsegv2:armhf (2.14-1+b2) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19722 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2+b2_armhf.deb ... Unpacking gawk (1:5.2.1-2+b2) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.8-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.8-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_armhf.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:armhf (3.12.8-3) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20231 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_armhf.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_armhf.deb ... Unpacking libcom-err2:armhf (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... 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Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up gawk (1:5.2.1-2+b2) ... Setting up libxcb-render0:armhf (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libuv1t64:armhf (1.48.0-7) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:armhf (2020.2-6+b2) ... Setting up libxcb-shm0:armhf (1.17.0-2+b1) ... Setting up libcom-err2:armhf (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:armhf (2.1-6.1+b2) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 28 07:51:40 UTC 2024. Universal Time is now: Sat Dec 28 07:51:40 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libpython3.13-minimal:armhf (3.13.1-2) ... Setting up libfontenc1:armhf (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.82.4-1) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libexpat1-dev:armhf (2.6.4-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:armhf (1.0.16-1) ... Setting up libimagequant0:armhf (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.44-3) ... Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-3) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libgfortran5:armhf (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:armhf (1.4.0-0.1+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:armhf (4.5.1+git230720-5) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up mummer (3.23+dfsg-8) ... Setting up libopenjp2-7:armhf (2.5.0-2+b4) ... Setting up python3.13-minimal (3.13.1-2) ... Setting up libx11-6:armhf (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libmbedcrypto16:armhf (3.6.2-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up libwebpmux3:armhf (1.4.0-0.1+b1) ... Setting up libpython3.13-stdlib:armhf (3.13.1-2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpython3.13:armhf (3.13.1-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.22.5-3) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b3) ... Setting up libtool (2.4.7-8) ... Setting up python3.13 (3.13.1-2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:armhf (1.4.0-0.1+b1) ... Setting up libxext6:armhf (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:armhf (3.6.2-3) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up libpython3.13-dev:armhf (3.13.1-2) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libjs-sphinxdoc (8.1.3-3) ... Setting up libmbedtls21:armhf (3.6.2-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:armhf (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:armhf (10.1.0-1) ... Setting up libxss1:armhf (1:1.2.3-1+b2) ... Setting up libfontconfig1:armhf (2.15.0-1.1+b1) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b2) ... Setting up libxft2:armhf (2.3.6-1+b3) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up python3.13-dev (3.13.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:armhf (8.6.15-1) ... Setting up python3.12-tk (3.12.8-3) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:armhf (1.18.2-2) ... Setting up python3.13-tk (3.13.1-2) ... Setting up libraqm0:armhf (0.10.2-1) ... Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libpython3.12-stdlib:armhf (3.12.8-3) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3.12t64:armhf (3.12.8-3) ... Setting up libpython3-stdlib:armhf (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up libpython3.12-dev:armhf (3.12.8-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.2-1) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up python3-pil:armhf (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3.12-dev (3.12.8-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:armhf (5.3.0-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up libpython3-dev:armhf (3.12.8-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-tk:armhf (3.13.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:armhf (10.4.0-1+b1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up libpython3-all-dev:armhf (3.12.8-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.8-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-all-dev (3.12.8-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-fs (2.4.16-5.1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-contourpy (1.3.1-1) ... Setting up dh-python (6.20241217) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-pandas-lib:armhf (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up python3-seaborn (0.13.2-4) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyani-0.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyani_0.2.12-3_source.changes dpkg-buildpackage: info: source package python-pyani dpkg-buildpackage: info: source version 0.2.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pyani-0.2.12' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2025-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running clean removing '/build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2025-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running clean removing '/build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt make[1]: Leaving directory '/build/reproducible-path/python-pyani-0.2.12' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2025-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2025-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2025-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running build running build_py creating /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_files.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/anim.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_config.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/run_multiprocessing.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/run_sge.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/__init__.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/anib.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_graphics.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/tetra.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_jobs.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_tools.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani running egg_info creating pyani.egg-info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt writing manifest file 'pyani.egg-info/SOURCES.txt' reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.13 copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.13 copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.13 changing mode of build/scripts-3.13/average_nucleotide_identity.py from 644 to 755 changing mode of build/scripts-3.13/genbank_get_genomes_by_taxon.py from 644 to 755 changing mode of build/scripts-3.13/delta_filter_wrapper.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2025-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running build running build_py creating /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/pyani_files.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/anim.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/pyani_config.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/run_multiprocessing.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/run_sge.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/__init__.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/anib.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/pyani_graphics.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/tetra.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/pyani_jobs.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani copying pyani/pyani_tools.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani running egg_info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.12 copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.12 copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.12 copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.12 changing mode of build/scripts-3.12/average_nucleotide_identity.py from 644 to 755 changing mode of build/scripts-3.12/genbank_get_genomes_by_taxon.py from 644 to 755 changing mode of build/scripts-3.12/delta_filter_wrapper.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyani-0.2.12 plugins: typeguard-4.4.1 collected 56 items tests/test_anib.py sss.....sss...ss [ 28%] tests/test_anim.py ...... [ 39%] tests/test_concordance.py .s.. [ 46%] tests/test_dependencies.py ......s. [ 60%] tests/test_graphics.py ...... [ 71%] tests/test_jobs.py ......... [ 87%] tests/test_multiprocessing.py ... [ 92%] tests/test_parsing.py . [ 94%] tests/test_tetra.py ... [100%] =============================== warnings summary =============================== pyani/pyani_graphics.py:70 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:70: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_SPBND_BURD) pyani/pyani_graphics.py:71 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:71: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_HADAMARD_BURD) pyani/pyani_graphics.py:72 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:72: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_BURD) .pybuild/cpython3_3.13_pyani/build/tests/test_anib.py::TestParsing::test_blastdir_processing .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy results.alignment_lengths[org][org] = length .pybuild/cpython3_3.13_pyani/build/tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy results.alignment_lengths[org][org] = length .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = 1.0 .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = float(val) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = 100.0 .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy correlations[org2][org1] = correlations[org1][org2] -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 46 passed, 10 skipped, 31 warnings in 521.91s (0:08:41) ============ I: pybuild base:311: cd /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyani-0.2.12 plugins: typeguard-4.4.1 collected 56 items tests/test_anib.py sss.....sss...ss [ 28%] tests/test_anim.py ...... [ 39%] tests/test_concordance.py .s.. [ 46%] tests/test_dependencies.py ......s. [ 60%] tests/test_graphics.py ...... [ 71%] tests/test_jobs.py ......... [ 87%] tests/test_multiprocessing.py ... [ 92%] tests/test_parsing.py . [ 94%] tests/test_tetra.py ... [100%] =============================== warnings summary =============================== pyani/pyani_graphics.py:70 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_graphics.py:70: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_SPBND_BURD) pyani/pyani_graphics.py:71 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_graphics.py:71: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_HADAMARD_BURD) pyani/pyani_graphics.py:72 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_graphics.py:72: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_BURD) .pybuild/cpython3_3.12_pyani/build/tests/test_anib.py::TestParsing::test_blastdir_processing .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy results.alignment_lengths[org][org] = length .pybuild/cpython3_3.12_pyani/build/tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy results.alignment_lengths[org][org] = length .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = 1.0 .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = float(val) .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = 100.0 .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) .pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.12_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy correlations[org2][org1] = correlations[org1][org2] -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 46 passed, 10 skipped, 31 warnings in 579.21s (0:09:39) ============ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pyani/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani /usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2025-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_files.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anim.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_config.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/run_multiprocessing.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/run_sge.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__init__.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anib.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_files.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/anib.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_graphics.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_config.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/tetra.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_tools.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_jobs.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/anim.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_jobs.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_tools.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_files.py to pyani_files.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/anim.py to anim.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_config.py to pyani_config.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/run_sge.py to run_sge.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/anib.py to anib.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/tetra.py to tetra.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-313.pyc running install_egg_info Copying pyani.egg-info to /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani-0.2.12.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/genbank_get_genomes_by_taxon.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/average_nucleotide_identity.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/delta_filter_wrapper.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755 changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755 changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani /usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2025-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_files.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/anim.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_config.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/run_multiprocessing.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/run_sge.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__init__.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/anib.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_graphics.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/pyani_jobs.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/anim.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/tetra.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/pyani_tools.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/pyani_graphics.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/pyani_files.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/anib.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/__pycache__/pyani_config.cpython-312.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/tetra.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_jobs.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_tools.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/pyani_files.py to pyani_files.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/anim.py to anim.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/pyani_config.py to pyani_config.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/run_sge.py to run_sge.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/anib.py to anib.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/tetra.py to tetra.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-312.pyc running install_egg_info Copying pyani.egg-info to /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.12/dist-packages/pyani-0.2.12.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/genbank_get_genomes_by_taxon.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.12/average_nucleotide_identity.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.12/delta_filter_wrapper.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755 changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755 changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pyani-0.2.12' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/python-pyani-0.2.12' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyani' in '../python3-pyani_0.2.12-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../python-pyani_0.2.12-3_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pyani_0.2.12-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18438 and its subdirectories I: Current time: Fri Dec 27 20:16:39 -12 2024 I: pbuilder-time-stamp: 1735373799 Sat Dec 28 08:16:47 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32z-armhf-rb.debian.net. Sat Dec 28 08:16:47 UTC 2024 I: Preparing to do remote build '2' on virt32z-armhf-rb.debian.net. Sat Dec 28 08:37:53 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. Sat Dec 28 08:37:55 UTC 2024 I: python-pyani_0.2.12-3_armhf.changes: Format: 1.8 Date: Fri, 24 Nov 2023 22:32:48 +0530 Source: python-pyani Binary: python3-pyani Architecture: armhf Version: 0.2.12-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Ananthu C V Description: python3-pyani - Python3 module for average nucleotide identity analyses Closes: 1044066 Changes: python-pyani (0.2.12-3) unstable; urgency=medium . [ Ananthu C V ] * Team upload * add patch to fix dataframe sorting syntax (Closes: #1044066) . [ Andreas Tille ] * Standards-Version: 4.6.2 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: badea382a950bae15810e0336ffc1ba6e25a717c 9734 python-pyani_0.2.12-3_armhf.buildinfo 672c657162a9d8adb5bad886ee37c81aeadf0349 48288 python3-pyani_0.2.12-3_armhf.deb Checksums-Sha256: fae7dd96ee7e9c64dc4e0de59846e3714a43b431a3ce26f3df33e56d57618756 9734 python-pyani_0.2.12-3_armhf.buildinfo 36562b263846ea6d2b647ad718eb897a930b2fcb18c91bf8aef0780df95656d5 48288 python3-pyani_0.2.12-3_armhf.deb Files: 754523783ebbd76b061aebb27f15d940 9734 science optional python-pyani_0.2.12-3_armhf.buildinfo d612c5eafcc91749b6faae805ee4ffac 48288 python optional python3-pyani_0.2.12-3_armhf.deb Sat Dec 28 08:37:57 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_15-12392.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.N0oYbWIo/python-pyani_0.2.12-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.N0oYbWIo/python-pyani_0.2.12-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.N0oYbWIo/python-pyani_0.2.12-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.N0oYbWIo/b1/python-pyani_0.2.12-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.N0oYbWIo/b2/python-pyani_0.2.12-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.327s) 0.327s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.014s) 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 635ms CPU time consumed: 633ms Sat Dec 28 08:37:57 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sat Dec 28 08:37:57 UTC 2024 I: python-pyani from trixie built successfully and reproducibly on armhf. Sat Dec 28 08:37:58 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Dec 28 08:37:58 UTC 2024 I: Submitting 12K b1/python-pyani_0.2.12-3_armhf.buildinfo.asc Sat Dec 28 08:37:59 UTC 2024 I: Submitting 12K b2/python-pyani_0.2.12-3_armhf.buildinfo.asc Sat Dec 28 08:38:00 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Dec 28 08:38:00 UTC 2024 I: Done submitting .buildinfo files. Sat Dec 28 08:38:00 UTC 2024 I: Removing signed python-pyani_0.2.12-3_armhf.buildinfo.asc files: removed './b1/python-pyani_0.2.12-3_armhf.buildinfo.asc' removed './b2/python-pyani_0.2.12-3_armhf.buildinfo.asc'