Fri Jan 10 03:06:27 UTC 2025 I: starting to build python-pymummer/trixie/armhf on jenkins on '2025-01-10 03:05' Fri Jan 10 03:06:27 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_32/23497/console.log Fri Jan 10 03:06:27 UTC 2025 I: Downloading source for trixie/python-pymummer=0.11.0-4 --2025-01-10 03:06:27-- http://deb.debian.org/debian/pool/main/p/python-pymummer/python-pymummer_0.11.0-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2206 (2.2K) [text/prs.lines.tag] Saving to: ‘python-pymummer_0.11.0-4.dsc’ 0K .. 100% 258M=0s 2025-01-10 03:06:27 (258 MB/s) - ‘python-pymummer_0.11.0-4.dsc’ saved [2206/2206] Fri Jan 10 03:06:27 UTC 2025 I: python-pymummer_0.11.0-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pymummer Binary: python3-pymummer Architecture: all Version: 0.11.0-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: https://github.com/sanger-pathogens/pymummer Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pymummer Vcs-Git: https://salsa.debian.org/med-team/python-pymummer.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, fastaq, mummer, python3-pytest Package-List: python3-pymummer deb python optional arch=all Checksums-Sha1: 232bb111d99949c3a4fcf75f70a82750a87ec8b5 29334 python-pymummer_0.11.0.orig.tar.gz 2da6196e2b58a33fb08f34f592c4eed90a4acc8a 2920 python-pymummer_0.11.0-4.debian.tar.xz Checksums-Sha256: 960b7e29603f6126e8df89ded62e15399c10d9e62b501336971ee272923967ac 29334 python-pymummer_0.11.0.orig.tar.gz 9b74881446fec8d4e5b2664a703e422568dc0271bda3cd7bc36df08a8daa1035 2920 python-pymummer_0.11.0-4.debian.tar.xz Files: 6e651d5d54ff8d161e7448baa5d9fd9d 29334 python-pymummer_0.11.0.orig.tar.gz 30fdd3df0cb76298fdb99ab3c92e40f8 2920 python-pymummer_0.11.0-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmVvN7cWHGVtb2xsaWVy QGVtbHdrczk5OS5ldQAKCRB5PPZ+jw0R2ktKD/9YTPKWGB1j/HYpjWi4RqLb0JXQ LcKnaJxYIgcZAIQQM2lhqXwnZTulIXJfJoOslSUDeNPmSQka4PPby9pIk5lwfpsN rd0YHU6kq2BseWX/yHtpGWyDCU65OvFr7GvqFd3MAOWTXG1Qxh/AHwGC+WnbRpI8 lf3+Vy8V5fZKIgQWp2MVQZ9bWlVPb4mBGyHVcxYjXGjuAj2mvBTnxIHpKkej6vow RkVCP1nsJtlCJAwjpShdSPCj2BnCTJ/5/JpsM5e3S1dJzaS9JadVnH12OwsEhLcf 6vs5/nqgrW3d2jn0hhzxpRZyj6CzPEgopVcJ622v8tqouS8l+Cj7EEmi8O0MEeI/ 7S9bLObFmsSdSm6gPyAn1w0ckwe+wiDNkcwsVL1rWZfE/xKWjP+b0WnZlCxzr5Oe fqz2wlZBRNLiQZZ6cgEIGIXrk6d5s24i9rER8n0yiP5qAwgg3gYpCRtgu3oJ/pDn tMvMWrkGa/2VTF9SkBLJyVQyPCvBWbIfsr1GyybT+5+Sxo2cwTWN7Q+Uu61MvL29 /YlMm9HzOUP8oyPr17cIO8vCZDJhC2ZiiYExWL5N6w48N5PPEODTWMLCaXqBZJno xRYqi53WL1EarKy2mSO3i/qmizDpN0IY77DEHSGTGYfW8RmRhVyNdSUZshM1W5NU OdUUDxmTwa+pynBWWQ== =dHH+ -----END PGP SIGNATURE----- Fri Jan 10 03:06:27 UTC 2025 I: Checking whether the package is not for us Fri Jan 10 03:06:27 UTC 2025 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Fri Jan 10 03:06:27 UTC 2025 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Fri Jan 10 03:10:21 UTC 2025 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 9 15:06:33 -12 2025 I: pbuilder-time-stamp: 1736478393 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pymummer_0.11.0-4.dsc] I: copying [./python-pymummer_0.11.0.orig.tar.gz] I: copying [./python-pymummer_0.11.0-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pymummer_0.11.0-4.dsc: unsupported subcommand dpkg-source: info: extracting python-pymummer in python-pymummer-0.11.0 dpkg-source: info: unpacking python-pymummer_0.11.0.orig.tar.gz dpkg-source: info: unpacking python-pymummer_0.11.0-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6476/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='ba56b2a255cf44fe98e4eb41d0397b18' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6476' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.C6bZp0X3/pbuilderrc_jDNX --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.C6bZp0X3/b1 --logfile b1/build.log python-pymummer_0.11.0-4.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/6476/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, fastaq, mummer, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19567 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on fastaq; however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} file{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} mummer{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 38.8 MB of archives. After unpacking 142 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-6 [69.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-6 [146 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libsigsegv2 armhf 2.14-1+b2 [33.6 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf gawk armhf 1:5.2.1-2+b2 [630 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.8-3 [802 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.8-3 [1794 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.8-1 [26.9 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-4 [256 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 17 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1824 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.8-3 [677 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.8-1 [9792 B] Get: 25 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.8-1 [27.9 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libpython3.13-minimal armhf 3.13.1-2 [844 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf python3.13-minimal armhf 3.13.1-2 [1838 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-3 [195 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-13 [84.7 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-3 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.23 [90.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-3 [1488 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf debhelper all 13.23 [919 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 64 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 75.6.0-1 [222 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 75.6.0-1 [720 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20241217 [113 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.19+dfsg-1 [163 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.11.1-1 [311 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.5-2+b1 [82.3 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf samtools armhf 1.20-3 [620 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf fastaq all 3.17.0-9 [47.8 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libpython3.13-stdlib armhf 3.13.1-2 [1846 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf mummer armhf 3.23+dfsg-8 [627 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf python3.13 armhf 3.13.1-2 [740 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.12.8-1 [1048 B] Get: 96 http://deb.debian.org/debian trixie/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 97 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf python3-pytest all 8.3.4-1 [250 kB] Fetched 38.8 MB in 6s (6351 kB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19567 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../libreadline8t64_8.2-6_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-6) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../libsigsegv2_2.14-1+b2_armhf.deb ... Unpacking libsigsegv2:armhf (2.14-1+b2) ... Setting up readline-common (8.2-6) ... Setting up libreadline8t64:armhf (8.2-6) ... Setting up libsigsegv2:armhf (2.14-1+b2) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19609 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2+b2_armhf.deb ... Unpacking gawk (1:5.2.1-2+b2) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.8-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.8-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_armhf.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:armhf (3.12.8-3) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20118 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_armhf.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libffi8:armhf. Preparing to unpack .../04-libffi8_3.4.6-1_armhf.deb ... Unpacking libffi8:armhf (3.4.6-1) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../05-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../06-libcom-err2_1.47.2-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.2-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../07-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../08-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../09-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../14-libpython3.12-stdlib_3.12.8-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../15-python3.12_3.12.8-3_armhf.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../16-libpython3-stdlib_3.12.8-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21154 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.8-1_armhf.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libpython3.13-minimal:armhf. Preparing to unpack .../01-libpython3.13-minimal_3.13.1-2_armhf.deb ... Unpacking libpython3.13-minimal:armhf (3.13.1-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../02-python3.13-minimal_3.13.1-2_armhf.deb ... Unpacking python3.13-minimal (3.13.1-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-3_armhf.deb ... Unpacking gettext-base (0.22.5-3) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.2-13_armhf.deb ... Unpacking bsdextrautils (2.40.2-13) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../11-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-5_armhf.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.22.5-3_all.deb ... Unpacking autopoint (0.22.5-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../24-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libunistring5:armhf. Preparing to unpack .../26-libunistring5_1.3-1_armhf.deb ... Unpacking libunistring5:armhf (1.3-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../27-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-3_armhf.deb ... Unpacking gettext (0.22.5-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../33-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../34-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../35-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../36-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../37-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../38-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../39-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../40-python3-pkg-resources_75.6.0-1_all.deb ... Unpacking python3-pkg-resources (75.6.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../41-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../42-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../43-python3-setuptools_75.6.0-1_all.deb ... Unpacking python3-setuptools (75.6.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../44-dh-python_6.20241217_all.deb ... Unpacking dh-python (6.20241217) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../45-libbrotli1_1.1.0-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b6) ... Selecting previously unselected package libidn2-0:armhf. Preparing to unpack .../46-libidn2-0_2.3.7-2+b1_armhf.deb ... Unpacking libidn2-0:armhf (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit0:armhf. Preparing to unpack .../47-libp11-kit0_0.25.5-3_armhf.deb ... Unpacking libp11-kit0:armhf (0.25.5-3) ... Selecting previously unselected package libtasn1-6:armhf. Preparing to unpack .../48-libtasn1-6_4.19.0-3+b3_armhf.deb ... Unpacking libtasn1-6:armhf (4.19.0-3+b3) ... Selecting previously unselected package libgnutls30t64:armhf. Preparing to unpack .../49-libgnutls30t64_3.8.8-2_armhf.deb ... Unpacking libgnutls30t64:armhf (3.8.8-2) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../50-libsasl2-modules-db_2.1.28+dfsg1-8_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../51-libsasl2-2_2.1.28+dfsg1-8_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../52-libldap-2.5-0_2.5.19+dfsg-1_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.19+dfsg-1) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../53-libnghttp2-14_1.64.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:armhf. Preparing to unpack .../54-libnghttp3-9_1.6.0-2_armhf.deb ... Unpacking libnghttp3-9:armhf (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:armhf. Preparing to unpack .../55-libngtcp2-16_1.9.1-1_armhf.deb ... Unpacking libngtcp2-16:armhf (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:armhf. Preparing to unpack .../56-libngtcp2-crypto-gnutls8_1.9.1-1_armhf.deb ... Unpacking libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Selecting previously unselected package libpsl5t64:armhf. Preparing to unpack .../57-libpsl5t64_0.21.2-1.1+b1_armhf.deb ... Unpacking libpsl5t64:armhf (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../58-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:armhf. Preparing to unpack .../59-libssh2-1t64_1.11.1-1_armhf.deb ... Unpacking libssh2-1t64:armhf (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:armhf. Preparing to unpack .../60-libcurl3t64-gnutls_8.11.1-1_armhf.deb ... Unpacking libcurl3t64-gnutls:armhf (8.11.1-1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../61-libdeflate0_1.22-1_armhf.deb ... Unpacking libdeflate0:armhf (1.22-1) ... Selecting previously unselected package libhtscodecs2:armhf. Preparing to unpack .../62-libhtscodecs2_1.6.1-1_armhf.deb ... Unpacking libhtscodecs2:armhf (1.6.1-1) ... Selecting previously unselected package libhts3t64:armhf. Preparing to unpack .../63-libhts3t64_1.20+ds-2_armhf.deb ... Unpacking libhts3t64:armhf (1.20+ds-2) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../64-libncurses6_6.5-2+b1_armhf.deb ... Unpacking libncurses6:armhf (6.5-2+b1) ... Selecting previously unselected package samtools. Preparing to unpack .../65-samtools_1.20-3_armhf.deb ... Unpacking samtools (1.20-3) ... Selecting previously unselected package fastaq. Preparing to unpack .../66-fastaq_3.17.0-9_all.deb ... Unpacking fastaq (3.17.0-9) ... Selecting previously unselected package libpython3.13-stdlib:armhf. Preparing to unpack .../67-libpython3.13-stdlib_3.13.1-2_armhf.deb ... Unpacking libpython3.13-stdlib:armhf (3.13.1-2) ... Selecting previously unselected package mummer. Preparing to unpack .../68-mummer_3.23+dfsg-8_armhf.deb ... Unpacking mummer (3.23+dfsg-8) ... Selecting previously unselected package python3.13. Preparing to unpack .../69-python3.13_3.13.1-2_armhf.deb ... Unpacking python3.13 (3.13.1-2) ... Selecting previously unselected package python3-all. Preparing to unpack .../70-python3-all_3.12.8-1_armhf.deb ... Unpacking python3-all (3.12.8-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../71-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../72-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../73-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../74-python3-pytest_8.3.4-1_all.deb ... Unpacking python3-pytest (8.3.4-1) ... Setting up libhtscodecs2:armhf (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-13) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up gawk (1:5.2.1-2+b2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:armhf (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jan 10 03:08:51 UTC 2025. Universal Time is now: Fri Jan 10 03:08:51 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:armhf (3.13.1-2) ... Setting up autotools-dev (20220109.1) ... Setting up libncurses6:armhf (6.5-2+b1) ... Setting up libunistring5:armhf (1.3-1) ... Setting up autopoint (0.22.5-3) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.6.0-2) ... Setting up libffi8:armhf (3.4.6-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up mummer (3.23+dfsg-8) ... Setting up libtasn1-6:armhf (4.19.0-3+b3) ... Setting up python3.13-minimal (3.13.1-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:armhf (1.9.1-1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libpython3.13-stdlib:armhf (3.13.1-2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-3) ... Setting up libtool (2.4.7-8) ... Setting up python3.13 (3.13.1-2) ... Setting up libidn2-0:armhf (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libgnutls30t64:armhf (3.8.8-2) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libldap-2.5-0:armhf (2.5.19+dfsg-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Setting up libpython3.12-stdlib:armhf (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up libcurl3t64-gnutls:armhf (8.11.1-1) ... Setting up debhelper (13.23) ... Setting up libhts3t64:armhf (1.20+ds-2) ... Setting up libpython3-stdlib:armhf (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up samtools (1.20-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up fastaq (3.17.0-9) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up dh-python (6.20241217) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pymummer-0.11.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pymummer_0.11.0-4_source.changes dpkg-buildpackage: info: source package python-pymummer dpkg-buildpackage: info: source version 0.11.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean LC_ALL=C.UTF-8 dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running clean removing '/build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running clean removing '/build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary LC_ALL=C.UTF-8 dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running build running build_py creating /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer copying pymummer/nucmer.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer copying pymummer/syscall.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer copying pymummer/snp_file.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer copying pymummer/coords_file.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer copying pymummer/alignment.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer copying pymummer/variant.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer copying pymummer/__init__.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer copying pymummer/snp.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running build running build_py creating /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/nucmer.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/syscall.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/snp_file.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/coords_file.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/alignment.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/variant.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/__init__.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/snp.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer; cp -r /build/reproducible-path/python-pymummer-0.11.0/pymummer/tests /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/ mkdir: cannot create directory ‘/build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer’: File exists I: pybuild base:311: cd /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pymummer-0.11.0 plugins: typeguard-4.4.1 collected 38 items pymummer/tests/alignment_test.py .................. [ 47%] pymummer/tests/coords_file_test.py ... [ 55%] pymummer/tests/nucmer_test.py ....... [ 73%] pymummer/tests/snp_file_test.py .. [ 78%] pymummer/tests/snp_test.py .. [ 84%] pymummer/tests/syscall_test.py .. [ 89%] pymummer/tests/variant_test.py .... [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} __version__ = Distribution().from_name('pyfastaq').version pymummer/__init__.py:1 /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 38 passed, 2 warnings in 0.76s ======================== I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer; cp -r /build/reproducible-path/python-pymummer-0.11.0/pymummer/tests /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/ mkdir: cannot create directory ‘/build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer’: File exists I: pybuild base:311: cd /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pymummer-0.11.0 plugins: typeguard-4.4.1 collected 38 items pymummer/tests/alignment_test.py .................. [ 47%] pymummer/tests/coords_file_test.py ... [ 55%] pymummer/tests/nucmer_test.py ....... [ 73%] pymummer/tests/snp_file_test.py .. [ 78%] pymummer/tests/snp_test.py .. [ 84%] pymummer/tests/syscall_test.py .. [ 89%] pymummer/tests/variant_test.py .... [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'} __version__ = Distribution().from_name('pyfastaq').version pymummer/__init__.py:1 /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 38 passed, 2 warnings in 0.70s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pymummer/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/nucmer.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__pycache__/coords_file.cpython-313.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__pycache__/nucmer.cpython-313.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__pycache__/snp.cpython-313.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__pycache__/syscall.cpython-313.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__pycache__/snp_file.cpython-313.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__pycache__/variant.cpython-313.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/syscall.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/snp_file.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/coords_file.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/alignment.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/__pycache__/syscall_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/__pycache__/snp_file_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/__pycache__/coords_file_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/__pycache__/alignment_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/__pycache__/snp_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/__pycache__/variant_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/__pycache__/nucmer_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/syscall_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/nucmer_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/variant_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/alignment_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/snp_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/coords_file_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/nucmer_test_ref.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/nucmer_test_write_script_no_snps.sh -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_no_header.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_with_header.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/nucmer_test_qry.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/nucmer_test_write_script_with_snps.sh -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/nucmer_test_out.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/snp_file_test_no_header.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/snp_file_test_get_all_variants.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/snp_file_test_with_header.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/nucmer_test_out.coords.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/tests/snp_file_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/variant.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/__init__.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.13_pymummer/build/pymummer/snp.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/nucmer.py to nucmer.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/syscall.py to syscall.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/snp_file.py to snp_file.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/coords_file.py to coords_file.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/syscall_test.py to syscall_test.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/nucmer_test.py to nucmer_test.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/variant_test.py to variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/alignment_test.py to alignment_test.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/snp_test.py to snp_test.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/coords_file_test.py to coords_file_test.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/tests/snp_file_test.py to snp_file_test.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/variant.py to variant.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer/snp.py to snp.cpython-313.pyc running install_egg_info running egg_info creating pymummer.egg-info writing pymummer.egg-info/PKG-INFO writing dependency_links to pymummer.egg-info/dependency_links.txt writing requirements to pymummer.egg-info/requires.txt writing top-level names to pymummer.egg-info/top_level.txt writing manifest file 'pymummer.egg-info/SOURCES.txt' reading manifest file 'pymummer.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pymummer.egg-info/SOURCES.txt' Copying pymummer.egg-info to /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.13/dist-packages/pymummer-0.11.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/nucmer.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/syscall.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/nucmer.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/snp.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/alignment.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/snp_file.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/variant.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/coords_file.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/syscall.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/snp_file.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/coords_file.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/alignment.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/nucmer_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/variant_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/snp_file_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/syscall_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/alignment_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/coords_file_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/snp_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/syscall_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/nucmer_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/variant_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/alignment_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/snp_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/coords_file_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_ref.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_write_script_no_snps.sh -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_no_header.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_with_header.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_qry.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_write_script_with_snps.sh -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_out.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/snp_file_test_no_header.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/snp_file_test_get_all_variants.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/snp_file_test_with_header.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_out.coords.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/snp_file_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/variant.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__init__.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/snp.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/nucmer.py to nucmer.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/syscall.py to syscall.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/snp_file.py to snp_file.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/coords_file.py to coords_file.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/syscall_test.py to syscall_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/nucmer_test.py to nucmer_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/variant_test.py to variant_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/alignment_test.py to alignment_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/snp_test.py to snp_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/coords_file_test.py to coords_file_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/snp_file_test.py to snp_file_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/variant.py to variant.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/snp.py to snp.cpython-312.pyc running install_egg_info running egg_info writing pymummer.egg-info/PKG-INFO writing dependency_links to pymummer.egg-info/dependency_links.txt writing requirements to pymummer.egg-info/requires.txt writing top-level names to pymummer.egg-info/top_level.txt reading manifest file 'pymummer.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pymummer.egg-info/SOURCES.txt' Copying pymummer.egg-info to /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer-0.11.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymummer' in '../python3-pymummer_0.11.0-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pymummer_0.11.0-4_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pymummer_0.11.0-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6476 and its subdirectories I: Current time: Thu Jan 9 15:10:16 -12 2025 I: pbuilder-time-stamp: 1736478616 Fri Jan 10 03:10:23 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Fri Jan 10 03:10:23 UTC 2025 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Fri Jan 10 03:13:14 UTC 2025 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Fri Jan 10 03:13:17 UTC 2025 I: python-pymummer_0.11.0-4_armhf.changes: Format: 1.8 Date: Mon, 04 Dec 2023 20:52:14 +0700 Source: python-pymummer Binary: python3-pymummer Architecture: all Version: 0.11.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: python3-pymummer - Python 3 interface to MUMmer Closes: 1046452 Changes: python-pymummer (0.11.0-4) unstable; urgency=medium . * Team upload. * Packaging update * Standards-Version: 4.6.2 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * d/rules: Remove override_dh_auto_clean and let dh-sequence-python3 clean .egg-info/ (Closes: #1046452) * d/rules: Replace override_dh_auto_test with PYBUILD variables * d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild * d/tests: Removed, run upstream tests with autopkgtest-pkg-pybuild Checksums-Sha1: 62bd18749af4ff4a1eb2e20d508b0ac88126498a 6799 python-pymummer_0.11.0-4_armhf.buildinfo 8ee58df5ac1605ab24df1d79b15b43bf1bb7d6c7 18036 python3-pymummer_0.11.0-4_all.deb Checksums-Sha256: 3340ba43e4a392f77ca8660e345beaaebca66e52ef73984f10a5aed3d456c437 6799 python-pymummer_0.11.0-4_armhf.buildinfo 70ca9c5332a5d2ebca8988aa00f1de12905df5d1a7a80fe79558645d3f3bac0d 18036 python3-pymummer_0.11.0-4_all.deb Files: 31ff2a49842e67ea8bf93517b24f9e0c 6799 python optional python-pymummer_0.11.0-4_armhf.buildinfo 317179e0de2463e8019c00b9c32b73c0 18036 python optional python3-pymummer_0.11.0-4_all.deb Fri Jan 10 03:13:18 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_32-23497.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.C6bZp0X3/python-pymummer_0.11.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.C6bZp0X3/python-pymummer_0.11.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.C6bZp0X3/python-pymummer_0.11.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.C6bZp0X3/b1/python-pymummer_0.11.0-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.C6bZp0X3/b2/python-pymummer_0.11.0-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.326s) 0.326s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.014s) 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 614ms CPU time consumed: 615ms Fri Jan 10 03:13:19 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Fri Jan 10 03:13:19 UTC 2025 I: python-pymummer from trixie built successfully and reproducibly on armhf. Fri Jan 10 03:13:20 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Jan 10 03:13:20 UTC 2025 I: Submitting 8.0K b1/python-pymummer_0.11.0-4_armhf.buildinfo.asc Fri Jan 10 03:13:21 UTC 2025 I: Submitting 8.0K b2/python-pymummer_0.11.0-4_armhf.buildinfo.asc Fri Jan 10 03:13:21 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jan 10 03:13:21 UTC 2025 I: Done submitting .buildinfo files. Fri Jan 10 03:13:21 UTC 2025 I: Removing signed python-pymummer_0.11.0-4_armhf.buildinfo.asc files: removed './b1/python-pymummer_0.11.0-4_armhf.buildinfo.asc' removed './b2/python-pymummer_0.11.0-4_armhf.buildinfo.asc'