Tue Feb 18 18:36:24 UTC 2025 I: starting to build savvy/trixie/armhf on jenkins on '2025-02-18 18:36' Tue Feb 18 18:36:24 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_4/13436/console.log Tue Feb 18 18:36:24 UTC 2025 I: Downloading source for trixie/savvy=2.1.0-3 --2025-02-18 18:36:24-- http://deb.debian.org/debian/pool/main/s/savvy/savvy_2.1.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2180 (2.1K) [text/prs.lines.tag] Saving to: ‘savvy_2.1.0-3.dsc’ 0K .. 100% 298M=0s 2025-02-18 18:36:25 (298 MB/s) - ‘savvy_2.1.0-3.dsc’ saved [2180/2180] Tue Feb 18 18:36:25 UTC 2025 I: savvy_2.1.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: savvy Binary: savvy-util, libsavvy-dev Architecture: any all Version: 2.1.0-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/statgen/savvy Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/savvy Vcs-Git: https://salsa.debian.org/med-team/savvy.git Build-Depends: debhelper-compat (= 13), cmake, libshrinkwrap-dev, libzstd-dev, zlib1g-dev Package-List: libsavvy-dev deb libdevel optional arch=all savvy-util deb science optional arch=any Checksums-Sha1: 8e53229d9f4af6044309c299e0d32bd431e6a38b 246051 savvy_2.1.0.orig.tar.gz c0b4440490911a5c7a044f39d97e89e174e35ff5 3188 savvy_2.1.0-3.debian.tar.xz Checksums-Sha256: 83ebd88c097799b3bbf771dc8ebf6892797ca7a1f49c2d1665d52cfc1bf9e1de 246051 savvy_2.1.0.orig.tar.gz c763954ad48321ef6daf20cdc61f736cb0f7e158e5d6ac3fdc14e916094f9963 3188 savvy_2.1.0-3.debian.tar.xz Files: f313bdd6a1958ee1fce6815fa803a112 246051 savvy_2.1.0.orig.tar.gz cd60db708ea37ab789b4f0617d0ebc04 3188 savvy_2.1.0-3.debian.tar.xz Dgit: bf75e14d264295cdeb0606841a2026b3787849d4 debian archive/debian/2.1.0-3 https://git.dgit.debian.org/savvy -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaydzwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrFKA/7BFbG4tp3Z1fd0pIs3BYrqIp0EMdl y8C1dZ8MPpKVzFGSLj/NMAo4qF6/wdrH/y9OzTMX+X0Cp89kb/B9jWoTrF4xPX7m qaSJmw7hn1jr54uW2A4czzYlk1OAAvn8qwtxlsA105mAs42QSuGEzkKuAG1jryr/ DPEivRpwkrPMLYD7vt4Xfco2d/lfI9oUESCLyGqRQNXit4QHi1YaCxQHyzQ2DNlz vmzCgVlB5yDppKsRZAM1ZGNTOMm79ElYc167Iu1NrAGuWcy4zTNgs/vmFZN7ICCe ceXjID685OPKPaesFUzAsfWPquUM/WEEGOR5bQl7UBO48wDVdMmCoMT60fP06fdb Q29Sxm7Z1DaXNuYtYcKY+TJPpGxA9lIXNZva8DKSbRzFFjEYNnGIJdfg9pft3x7g CEg9I7oAnKdNEBKtJ+DwxIlt072EDWMDMdaQ8RS0ff9aVUKOfXqMOjpIRb61nvPZ kHKQlFUcDsJ+hpUjiFUsbZtADS4lVBDydv6JlodYXYNn1yTQo3U00nGdpw+LFij1 Y43Ud1W/S8bkHaiRjXfBT5/n/6uIz9OUQYDgwEvFFQYnXsCwkNt82JntaQruLT6f JUhHGCAsxbfeqj8fahAs9kGdpDufMRoLvavktRwS/laua+WMa0meAKOizZqSp8Ge iR6BW79z/aLw9es= =4xQP -----END PGP SIGNATURE----- Tue Feb 18 18:36:25 UTC 2025 I: Checking whether the package is not for us Tue Feb 18 18:36:25 UTC 2025 I: Starting 1st build on remote node virt64z-armhf-rb.debian.net. Tue Feb 18 18:36:25 UTC 2025 I: Preparing to do remote build '1' on virt64z-armhf-rb.debian.net. Tue Feb 18 18:39:33 UTC 2025 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 18 06:36:31 -12 2025 I: pbuilder-time-stamp: 1739903791 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [savvy_2.1.0-3.dsc] I: copying [./savvy_2.1.0.orig.tar.gz] I: copying [./savvy_2.1.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./savvy_2.1.0-3.dsc: unsupported subcommand dpkg-source: info: extracting savvy in savvy-2.1.0 dpkg-source: info: unpacking savvy_2.1.0.orig.tar.gz dpkg-source: info: unpacking savvy_2.1.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_zstd.patch dpkg-source: info: applying remove-arch-check.patch dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28714/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='dafd730be004464b8ce5ec943c8a7f38' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28714' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.otQjNSBn/pbuilderrc_5XUX --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.otQjNSBn/b1 --logfile b1/build.log savvy_2.1.0-3.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64z 6.1.0-31-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/28714/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libshrinkwrap-dev, libzstd-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19534 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libshrinkwrap-dev; however: Package libshrinkwrap-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libshrinkwrap-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 34.6 MB of archives. After unpacking 127 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-7 [56.3 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-7 [866 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-3 [84.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-4 [30.3 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-4 [75.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 27 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-4 [285 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-4 [116 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8+b1 [18.6 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8+b1 [50.6 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libldap2 armhf 2.6.9+dfsg-1 [167 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.7-1 [20.3 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.20.0-2 [44.4 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.9-2 [1382 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.12.0+git20250209.89ed161+ds-1 [308 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.50.0-2 [140 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.31.5-2 [5911 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-3 [539 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf debhelper all 13.24.1 [920 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libshrinkwrap-dev all 1.2.0-2 [12.3 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libzstd-dev armhf 1.5.6+dfsg-2 [326 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Fetched 34.6 MB in 4s (9056 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19534 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_armhf.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_armhf.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-3_armhf.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_armhf.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/savvy-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../savvy_2.1.0-3_source.changes dpkg-buildpackage: info: source package savvy dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/savvy-2.1.0 -B/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/sav.dir/build.make CMakeFiles/sav.dir/depend make[3]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/savvy-2.1.0 /build/reproducible-path/savvy-2.1.0 /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf/CMakeFiles/sav.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/sav.dir/build.make CMakeFiles/sav.dir/build make[3]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' [ 25%] Building CXX object CMakeFiles/sav.dir/src/sav/concat.cpp.o [ 25%] Building CXX object CMakeFiles/sav.dir/src/sav/export.cpp.o [ 25%] Building CXX object CMakeFiles/sav.dir/src/sav/main.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/concat.cpp.o -MF CMakeFiles/sav.dir/src/sav/concat.cpp.o.d -o CMakeFiles/sav.dir/src/sav/concat.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/main.cpp.o -MF CMakeFiles/sav.dir/src/sav/main.cpp.o.d -o CMakeFiles/sav.dir/src/sav/main.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/main.cpp /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/export.cpp.o -MF CMakeFiles/sav.dir/src/sav/export.cpp.o.d -o CMakeFiles/sav.dir/src/sav/export.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp:9: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:15: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 33%] Building CXX object CMakeFiles/sav.dir/src/sav/head.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/head.cpp.o -MF CMakeFiles/sav.dir/src/sav/head.cpp.o.d -o CMakeFiles/sav.dir/src/sav/head.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp:8: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/14/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/sav/utility.hpp:10, from /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp:8: /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 452 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:10: /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 452 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:11, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:11, from /build/reproducible-path/savvy-2.1.0/include/savvy/sav_reader.hpp:12, from /build/reproducible-path/savvy-2.1.0/include/sav/sort.hpp:10, from /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:9: /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 [ 41%] Building CXX object CMakeFiles/sav.dir/src/sav/import.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/import.cpp.o -MF CMakeFiles/sav.dir/src/sav/import.cpp.o.d -o CMakeFiles/sav.dir/src/sav/import.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/import.cpp [ 50%] Building CXX object CMakeFiles/sav.dir/src/sav/index.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/index.cpp.o -MF CMakeFiles/sav.dir/src/sav/index.cpp.o.d -o CMakeFiles/sav.dir/src/sav/index.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp [ 58%] Building CXX object CMakeFiles/sav.dir/src/sav/merge.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/merge.cpp.o -MF CMakeFiles/sav.dir/src/sav/merge.cpp.o.d -o CMakeFiles/sav.dir/src/sav/merge.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/merge.cpp [ 66%] Building CXX object CMakeFiles/sav.dir/src/sav/rehead.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/rehead.cpp.o -MF CMakeFiles/sav.dir/src/sav/rehead.cpp.o.d -o CMakeFiles/sav.dir/src/sav/rehead.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:9: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp:9: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/14/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10: /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 452 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)::&, const pair&)>]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:332:18: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)::&, const pair&)>]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:332:18: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/sav/utility.hpp:10, from /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp:8: /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 452 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/sav/utility.hpp:10, from /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:8: /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 452 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/sav.dir/src/sav/sort.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/sort.cpp.o -MF CMakeFiles/sav.dir/src/sav/sort.cpp.o.d -o CMakeFiles/sav.dir/src/sav/sort.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/sort.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/sort.cpp:8: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 83%] Building CXX object CMakeFiles/sav.dir/src/sav/stat.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/stat.cpp.o -MF CMakeFiles/sav.dir/src/sav/stat.cpp.o.d -o CMakeFiles/sav.dir/src/sav/stat.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp:11: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/14/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:11, from /build/reproducible-path/savvy-2.1.0/include/savvy/sav_reader.hpp:12, from /build/reproducible-path/savvy-2.1.0/include/sav/sort.hpp:10, from /build/reproducible-path/savvy-2.1.0/src/sav/sort.cpp:7: /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 452 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/sav.dir/src/sav/utility.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/utility.cpp.o -MF CMakeFiles/sav.dir/src/sav/utility.cpp.o.d -o CMakeFiles/sav.dir/src/sav/utility.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/utility.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:11, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/sav/utility.hpp:10, from /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp:8: /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/14/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10: /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 452 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)::&, const pair&)>]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:332:18: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’ at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)::&, const pair&)>]’ at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:332:18: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’, inlined from ‘int stat_merge_main(int, char**)’ at /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp:646:28: /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable sav /usr/bin/cmake -E cmake_link_script CMakeFiles/sav.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic -Wl,--dependency-file=CMakeFiles/sav.dir/link.d CMakeFiles/sav.dir/src/sav/main.cpp.o CMakeFiles/sav.dir/src/sav/concat.cpp.o CMakeFiles/sav.dir/src/sav/export.cpp.o CMakeFiles/sav.dir/src/sav/head.cpp.o CMakeFiles/sav.dir/src/sav/import.cpp.o CMakeFiles/sav.dir/src/sav/index.cpp.o CMakeFiles/sav.dir/src/sav/merge.cpp.o CMakeFiles/sav.dir/src/sav/rehead.cpp.o CMakeFiles/sav.dir/src/sav/sort.cpp.o CMakeFiles/sav.dir/src/sav/stat.cpp.o CMakeFiles/sav.dir/src/sav/utility.cpp.o -o sav -lzstd -lz make[3]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' [100%] Built target sav make[2]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/savvy-2.1.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/savvy-2.1.0 -B/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav1.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/endianness.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/m3vcf_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_group_iterator.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/writer.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sparse_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/s1r.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/savvy.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/armadillo_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/typed_value.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sample_subset.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/ublas_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/logging.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/compressed_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_iterator.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/vcf_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/eigen3_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/csi.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/varint.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/dictionary.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/utility.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/region.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/portable_endian.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/file.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/data_format.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/pbwt.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/site_info.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/allele_status.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/bin/sav -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-targets.cmake -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-config.cmake -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-config-version.cmake make[1]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/savvy-util/usr/bin/sav contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'savvy-util' in '../savvy-util_2.1.0-3_armhf.deb'. dpkg-deb: building package 'savvy-util-dbgsym' in '../savvy-util-dbgsym_2.1.0-3_armhf.deb'. dpkg-deb: building package 'libsavvy-dev' in '../libsavvy-dev_2.1.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../savvy_2.1.0-3_armhf.buildinfo dpkg-genchanges --build=binary -O../savvy_2.1.0-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28714 and its subdirectories I: Current time: Tue Feb 18 06:39:07 -12 2025 I: pbuilder-time-stamp: 1739903947 Tue Feb 18 18:39:36 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ff4a-armhf-rb.debian.net. Tue Feb 18 18:39:36 UTC 2025 I: Preparing to do remote build '2' on ff4a-armhf-rb.debian.net. Tue Feb 18 18:44:32 UTC 2025 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net. Tue Feb 18 18:44:34 UTC 2025 I: savvy_2.1.0-3_armhf.changes: Format: 1.8 Date: Tue, 06 Aug 2024 20:55:26 +0200 Source: savvy Binary: libsavvy-dev savvy-util savvy-util-dbgsym Architecture: all armhf Version: 2.1.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libsavvy-dev - C++ interface for the SAV file format savvy-util - conversion tool for SAV file format Closes: 1075487 Changes: savvy (2.1.0-3) unstable; urgency=medium . * gcc-14.patch: new: fix an improper assignment in an assert. (Closes: #1075487) * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 15c05d9570636223af98dcd574c0f05652bc6229 73804 libsavvy-dev_2.1.0-3_all.deb d1dacbc3ce80b077d819ca4a511dd0200b3a3207 7940580 savvy-util-dbgsym_2.1.0-3_armhf.deb de9f9c3a3b551409c650f114847c39e99297ad99 207928 savvy-util_2.1.0-3_armhf.deb 3dfdebcc32bda8f44650da751b3299eceab14974 6095 savvy_2.1.0-3_armhf.buildinfo Checksums-Sha256: 4617fea178ddc658dca301c7cfc4ab2d3a22d369fad419d863b579bea1ffe762 73804 libsavvy-dev_2.1.0-3_all.deb 2680abe6403a11bcfae226358a559b2478ae4c7bc2f2014bfa02360b5293586d 7940580 savvy-util-dbgsym_2.1.0-3_armhf.deb 8e7bd521be8b3cb14a06196231f9c50949a5669722ab4254488a498866c99dcb 207928 savvy-util_2.1.0-3_armhf.deb a21bf4b938f79dcbfd97bc321761065e97da9d067d03cd2a63bf74ff011792d3 6095 savvy_2.1.0-3_armhf.buildinfo Files: 0e4adb71c440c106c133461053bc5ae6 73804 libdevel optional libsavvy-dev_2.1.0-3_all.deb de779e2afec93cf03967c878c3d17c25 7940580 debug optional savvy-util-dbgsym_2.1.0-3_armhf.deb e0dea30797cbeec78a916dc746fedda6 207928 science optional savvy-util_2.1.0-3_armhf.deb 87937f58d2b0314fc8075e3c92caf9b4 6095 science optional savvy_2.1.0-3_armhf.buildinfo Tue Feb 18 18:44:35 UTC 2025 I: diffoscope 288 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_4-13436.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.otQjNSBn/savvy_2.1.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.otQjNSBn/savvy_2.1.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.otQjNSBn/savvy_2.1.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.otQjNSBn/b1/savvy_2.1.0-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.otQjNSBn/b2/savvy_2.1.0-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 329ms CPU time consumed: 314ms Tue Feb 18 18:44:36 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Tue Feb 18 18:44:36 UTC 2025 I: savvy from trixie built successfully and reproducibly on armhf. Tue Feb 18 18:44:37 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Feb 18 18:44:37 UTC 2025 I: Submitting 8.0K b1/savvy_2.1.0-3_armhf.buildinfo.asc Tue Feb 18 18:44:38 UTC 2025 I: Submitting 8.0K b2/savvy_2.1.0-3_armhf.buildinfo.asc Tue Feb 18 18:44:38 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Feb 18 18:44:38 UTC 2025 I: Done submitting .buildinfo files. Tue Feb 18 18:44:38 UTC 2025 I: Removing signed savvy_2.1.0-3_armhf.buildinfo.asc files: removed './b1/savvy_2.1.0-3_armhf.buildinfo.asc' removed './b2/savvy_2.1.0-3_armhf.buildinfo.asc'