Mon Feb 3 16:42:35 UTC 2025 I: starting to build seer/trixie/armhf on jenkins on '2025-02-03 16:42' Mon Feb 3 16:42:35 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_17/13961/console.log Mon Feb 3 16:42:35 UTC 2025 I: Downloading source for trixie/seer=1.1.4-8 --2025-02-03 16:42:35-- http://deb.debian.org/debian/pool/main/s/seer/seer_1.1.4-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2033 (2.0K) [text/prs.lines.tag] Saving to: ‘seer_1.1.4-8.dsc’ 0K . 100% 286M=0s 2025-02-03 16:42:35 (286 MB/s) - ‘seer_1.1.4-8.dsc’ saved [2033/2033] Mon Feb 3 16:42:35 UTC 2025 I: seer_1.1.4-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seer Binary: seer Architecture: any Version: 1.1.4-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/johnlees/seer Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/seer Vcs-Git: https://salsa.debian.org/med-team/seer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev Package-List: seer deb science optional arch=any Checksums-Sha1: 01aa93df82b6e563f5e06ae47592ae0d98dce2da 972155 seer_1.1.4.orig.tar.gz 5aa0a353c526b23aa829e7334114d8dc53db98b6 9428 seer_1.1.4-8.debian.tar.xz Checksums-Sha256: 96e55b9fe2cde089ff05bbcd55088832e90f44a968a81a8dca9f9cffa6faa9c1 972155 seer_1.1.4.orig.tar.gz da8005864a8263d365688589347dde52f8b3b1b8f14815ea2b217d4a517878a7 9428 seer_1.1.4-8.debian.tar.xz Files: e4b331eaf17819aabc545b032148d8c2 972155 seer_1.1.4.orig.tar.gz cdc4d5c7115c74ca5cac6707ab79c095 9428 seer_1.1.4-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmajW6IACgkQYAMWptwn dHY7Sw/+LMOjwUDySwXEGK96jxofSYObOdZ6az9neFTRNYP2ewPbVjRUE8MLtbz9 1K5wQfi8yTKaEAcgsw2srI409p5HjBmkzkf+MYyfaMdeXltyukPKwVfyuV4jcpDz xXQHd8QFOlldv9NWjIrGR/iTdBhVsDwDTaHArQzOw784lnoFRG4UtHMeKniij1Vv d+c+CKsW9khqk0ZJTJIgfsMxgCfrPIwWOZl+UZBlBaJt5C3k4q9ybZur/6pRbhY9 yTdu130Wb+SE51awz+Xzjrd9HEdwvs0PaPVWcicu7XpS+4MoIKiQ77+PG9z2Y03m nJx+1/V21qsWvfy7hJstIvNFiURdWgbylp4GSp9Dd1jitq8U9XpF1VeakFP0ljL+ aNFhLtdbMxo+C/yDn5jAseLVUYTvCKFuY3k3txs1avDUPuI4Cf6D7dn6pdgXTcuo JBTehdE1CGW0Tnra/m4MxxIuWeMFfDBul4+hMK+mFd2Zfze8ogTNPACw1d2d12ud obUK2vi+RzXH8Jn59PhuT2H3ZCQckZXUr7BJKhBB/k0X9JoBjAmtQMkm8n0fxo80 3Ch4hCMEVrxiMspu6LPyici44JwMMP+rdzyfibWb0YkZH5Jv51LC9PCrbrmMhlLN eh4GwwmIoPovbvEwnhWigZBnXfYX6Hw+qj47+DHTVZKk8YtbD+U= =wA1R -----END PGP SIGNATURE----- Mon Feb 3 16:42:35 UTC 2025 I: Checking whether the package is not for us Mon Feb 3 16:42:35 UTC 2025 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Mon Feb 3 16:42:35 UTC 2025 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Mon Feb 3 16:50:11 UTC 2025 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 3 04:42:42 -12 2025 I: pbuilder-time-stamp: 1738600962 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seer_1.1.4-8.dsc] I: copying [./seer_1.1.4.orig.tar.gz] I: copying [./seer_1.1.4-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seer_1.1.4-8.dsc: unsupported subcommand dpkg-source: info: extracting seer in seer-1.1.4 dpkg-source: info: unpacking seer_1.1.4.orig.tar.gz dpkg-source: info: unpacking seer_1.1.4-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_lib_location.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc11.patch dpkg-source: info: applying typos.patch dpkg-source: info: applying cpp14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5806/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='d11256cfaa304258a86ae7a84a215aae' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5806' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VrmqopeF/pbuilderrc_CQTf --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VrmqopeF/b1 --logfile b1/build.log seer_1.1.4-8.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 6.1.0-30-armmp-lpae #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/5806/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libarmadillo-dev; however: Package libarmadillo-dev is not installed. pbuilder-satisfydepends-dummy depends on libdlib-dev; however: Package libdlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libgzstream-dev; however: Package libgzstream-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarmadillo-dev{a} libarmadillo14{a} libarpack2-dev{a} libarpack2t64{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdlib-data{a} libdlib-dev{a} libdlib19.2{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgzstream-dev{a} libgzstream0{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhwloc15{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-dev{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libopencv-core-dev{a} libopencv-core406t64{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} libpython3-dev{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuperlu-dev{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libvulkan1{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxml2{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} pybind11-dev{a} readline-common{a} sensible-utils{a} tzdata{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libeigen3-dev libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libpng-tools libsasl2-modules libtasn1-doc lynx mesa-vulkan-drivers publicsuffix wget 0 packages upgraded, 182 newly installed, 0 to remove and 0 not upgraded. Need to get 183 MB of archives. After unpacking 680 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-6 [257 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-6 [69.4 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-2 [84.6 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf autopoint all 0.23.1-1 [770 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf comerr-dev armhf 2.1-1.47.2-1 [55.1 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 28 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf debhelper all 13.24.1 [920 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf hdf5-helpers armhf 1.14.5+repack-3 [26.6 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-4 [30.3 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-4 [75.8 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 41 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-4 [285 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-4 [116 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libgssrpc4t64 armhf 1.21.3-4 [52.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libkadm5clnt-mit12 armhf 1.21.3-4 [37.5 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libkdb5-10t64 armhf 1.21.3-4 [37.3 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libkadm5srv-mit12 armhf 1.21.3-4 [47.4 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf krb5-multidev armhf 1.21.3-4 [126 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libaec0 armhf 1.1.3-1+b1 [21.9 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libsz2 armhf 1.1.3-1+b1 [8036 B] Get: 50 http://deb.debian.org/debian trixie/main armhf libaec-dev armhf 1.1.3-1+b1 [19.3 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-4 [111 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-12 [263 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-4 [1828 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libarpack2t64 armhf 3.9.1-4 [85.1 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libarmadillo14 armhf 1:14.2.1+dfsg-1 [99.7 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libblas-dev armhf 3.12.0-4 [121 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf liblapack-dev armhf 3.12.0-4 [1930 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libarpack2-dev armhf 3.9.1-4 [103 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8+b1 [18.6 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8+b1 [50.6 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libldap2 armhf 2.6.9+dfsg-1 [167 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.11.1-1+b1 [304 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libhdf5-310 armhf 1.14.5+repack-3 [1272 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libhdf5-fortran-310 armhf 1.14.5+repack-3 [102 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [67.3 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libhdf5-hl-fortran-310 armhf 1.14.5+repack-3 [38.3 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libhdf5-cpp-310 armhf 1.14.5+repack-3 [125 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libhdf5-hl-cpp-310 armhf 1.14.5+repack-3 [24.1 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3+b1 [145 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-3+b1 [263 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libjpeg-dev armhf 1:2.1.5-3+b1 [72.2 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libidn2-dev armhf 2.3.7-2+b1 [119 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libkrb5-dev armhf 1.21.3-4 [15.9 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libldap-dev armhf 2.6.9+dfsg-1 [286 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libunbound8 armhf 1.22.0-1+b1 [539 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libgnutls-dane0t64 armhf 3.8.8-2 [440 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libgnutls-openssl27t64 armhf 3.8.8-2 [440 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libp11-kit-dev armhf 0.25.5-3 [208 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libtasn1-6-dev armhf 4.19.0-3+b3 [93.2 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf nettle-dev armhf 3.10-1+b1 [1313 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libgnutls28-dev armhf 3.8.8-2 [1328 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.4.0-2 [2431 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libzstd-dev armhf 1.5.6+dfsg-2 [326 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libcurl4-openssl-dev armhf 8.11.1-1+b1 [425 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libhdf5-dev armhf 1.14.5+repack-3 [3091 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libsuperlu7 armhf 7.0.0+dfsg1-2 [142 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libsuperlu-dev armhf 7.0.0+dfsg1-2 [21.9 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libarmadillo-dev armhf 1:14.2.1+dfsg-1 [414 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-4 [10.6 MB] Get: 112 http://deb.debian.org/debian trixie/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 113 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83.0 armhf 1.83.0-4 [327 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83-dev armhf 1.83.0-4 [370 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libboost-program-options-dev armhf 1.83.0.2+b2 [3604 B] Get: 116 http://deb.debian.org/debian trixie/main armhf libdlib-data all 19.24.6+dfsg-1 [63.4 MB] Get: 117 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.44-3 [263 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libdlib19.2 armhf 19.24.6+dfsg-1 [3754 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libglvnd0 armhf 1.7.0-1+b2 [51.8 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.10-2 [337 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libdrm-common all 2.4.123-1 [8084 B] Get: 126 http://deb.debian.org/debian trixie/main armhf libdrm2 armhf 2.4.123-1 [34.1 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libglapi-mesa armhf 24.2.8-1 [44.6 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libx11-xcb1 armhf 2:1.8.10-2 [241 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libxcb-dri2-0 armhf 1.17.0-2+b1 [106 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libxcb-dri3-0 armhf 1.17.0-2+b1 [107 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libxcb-glx0 armhf 1.17.0-2+b1 [120 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libxcb-present0 armhf 1.17.0-2+b1 [105 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf libxcb-randr0 armhf 1.17.0-2+b1 [116 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.17.0-2+b1 [105 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf libxcb-sync1 armhf 1.17.0-2+b1 [108 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libxcb-xfixes0 armhf 1.17.0-2+b1 [109 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b3 [45.2 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf libxfixes3 armhf 1:6.0.0-2+b4 [18.6 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf libxshmfence1 armhf 1.3-1+b3 [8748 B] Get: 141 http://deb.debian.org/debian trixie/main armhf libxxf86vm1 armhf 1:1.1.4-1+b4 [18.2 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf libdrm-amdgpu1 armhf 2.4.123-1 [20.4 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf libdrm-radeon1 armhf 2.4.123-1 [19.6 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20250104-1 [78.0 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.13.3-1 [7252 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf libllvm19 armhf 1:19.1.6-1+b1 [23.8 MB] Get: 147 http://deb.debian.org/debian trixie/main armhf libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf libsensors5 armhf 1:3.6.0-10+b1 [32.3 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf mesa-libgallium armhf 24.2.8-1 [7097 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf libvulkan1 armhf 1.4.304.0-1 [113 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf libwayland-server0 armhf 1.23.1-1 [27.7 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf libgbm1 armhf 24.2.8-1 [39.0 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf libgl1-mesa-dri armhf 24.2.8-1 [41.0 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf libglx-mesa0 armhf 24.2.8-1 [132 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf libglx0 armhf 1.7.0-1+b2 [32.6 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf libtbbmalloc2 armhf 2022.0.0-1 [43.1 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf libhwloc15 armhf 2.11.2-1 [134 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf libtbbbind-2-5 armhf 2022.0.0-1 [13.3 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf libtbb12 armhf 2022.0.0-1 [77.2 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf libopencv-core406t64 armhf 4.6.0+dfsg-14+b4 [871 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf libtbb-dev armhf 2022.0.0-1 [199 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf libopencv-core-dev armhf 4.6.0+dfsg-14+b4 [1680 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf libpng-dev armhf 1.6.44-3 [349 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf libsqlite3-dev armhf 3.46.1-1 [1003 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf x11proto-dev all 2024.1-1 [603 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf libxau-dev armhf 1:1.0.11-1 [23.0 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf libxdmcp-dev armhf 1:1.1.5-1 [42.9 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf libxcb1-dev armhf 1.17.0-2+b1 [180 kB] Get: 171 http://deb.debian.org/debian trixie/main armhf libx11-dev armhf 2:1.8.10-2 [825 kB] Get: 172 http://deb.debian.org/debian trixie/main armhf libpython3.13-minimal armhf 3.13.1-3+b1 [845 kB] Get: 173 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-6 [146 kB] Get: 174 http://deb.debian.org/debian trixie/main armhf libpython3.13-stdlib armhf 3.13.1-3+b1 [1850 kB] Get: 175 http://deb.debian.org/debian trixie/main armhf libpython3.13 armhf 3.13.1-3+b1 [1868 kB] Get: 176 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.4-1 [140 kB] Get: 177 http://deb.debian.org/debian trixie/main armhf libpython3.13-dev armhf 3.13.1-3+b1 [3787 kB] Get: 178 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.13.1-2 [10.2 kB] Get: 179 http://deb.debian.org/debian trixie/main armhf pybind11-dev all 2.13.6-1 [204 kB] Get: 180 http://deb.debian.org/debian trixie/main armhf libdlib-dev armhf 19.24.6+dfsg-1 [2194 kB] Get: 181 http://deb.debian.org/debian trixie/main armhf libgzstream0 armhf 1.5+git20171107.9a20658-3 [6496 B] Get: 182 http://deb.debian.org/debian trixie/main armhf libgzstream-dev armhf 1.5+git20171107.9a20658-3 [6896 B] Fetched 183 MB in 7s (24.6 MB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../002-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_armhf.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-2_armhf.deb ... Unpacking bsdextrautils (2.40.4-2) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../011-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package media-types. Preparing to unpack .../013-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-5_armhf.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. 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Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../027-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libunistring5:armhf. Preparing to unpack .../029-libunistring5_1.3-1_armhf.deb ... Unpacking libunistring5:armhf (1.3-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../030-libicu72_72.1-6_armhf.deb ... Unpacking libicu72:armhf (72.1-6) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../031-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.23.1-1_armhf.deb ... Unpacking gettext (0.23.1-1) ... 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Selecting previously unselected package libglapi-mesa:armhf. Preparing to unpack .../127-libglapi-mesa_24.2.8-1_armhf.deb ... Unpacking libglapi-mesa:armhf (24.2.8-1) ... Selecting previously unselected package libx11-xcb1:armhf. Preparing to unpack .../128-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... Selecting previously unselected package libxcb-dri2-0:armhf. Preparing to unpack .../129-libxcb-dri2-0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-dri2-0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxcb-dri3-0:armhf. Preparing to unpack .../130-libxcb-dri3-0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-dri3-0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxcb-glx0:armhf. Preparing to unpack .../131-libxcb-glx0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-glx0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxcb-present0:armhf. Preparing to unpack .../132-libxcb-present0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-present0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxcb-randr0:armhf. Preparing to unpack .../133-libxcb-randr0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-randr0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../134-libxcb-shm0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxcb-sync1:armhf. Preparing to unpack .../135-libxcb-sync1_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-sync1:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxcb-xfixes0:armhf. Preparing to unpack .../136-libxcb-xfixes0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-xfixes0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../137-libxext6_2%3a1.3.4-1+b3_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b3) ... Selecting previously unselected package libxfixes3:armhf. Preparing to unpack .../138-libxfixes3_1%3a6.0.0-2+b4_armhf.deb ... Unpacking libxfixes3:armhf (1:6.0.0-2+b4) ... Selecting previously unselected package libxshmfence1:armhf. Preparing to unpack .../139-libxshmfence1_1.3-1+b3_armhf.deb ... Unpacking libxshmfence1:armhf (1.3-1+b3) ... Selecting previously unselected package libxxf86vm1:armhf. Preparing to unpack .../140-libxxf86vm1_1%3a1.1.4-1+b4_armhf.deb ... Unpacking libxxf86vm1:armhf (1:1.1.4-1+b4) ... Selecting previously unselected package libdrm-amdgpu1:armhf. Preparing to unpack .../141-libdrm-amdgpu1_2.4.123-1_armhf.deb ... Unpacking libdrm-amdgpu1:armhf (2.4.123-1) ... Selecting previously unselected package libdrm-radeon1:armhf. Preparing to unpack .../142-libdrm-radeon1_2.4.123-1_armhf.deb ... Unpacking libdrm-radeon1:armhf (2.4.123-1) ... Selecting previously unselected package libedit2:armhf. Preparing to unpack .../143-libedit2_3.1-20250104-1_armhf.deb ... Unpacking libedit2:armhf (3.1-20250104-1) ... Selecting previously unselected package libz3-4:armhf. Preparing to unpack .../144-libz3-4_4.13.3-1_armhf.deb ... Unpacking libz3-4:armhf (4.13.3-1) ... Selecting previously unselected package libllvm19:armhf. Preparing to unpack .../145-libllvm19_1%3a19.1.6-1+b1_armhf.deb ... Unpacking libllvm19:armhf (1:19.1.6-1+b1) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../146-libsensors-config_1%3a3.6.0-10_all.deb ... Unpacking libsensors-config (1:3.6.0-10) ... Selecting previously unselected package libsensors5:armhf. Preparing to unpack .../147-libsensors5_1%3a3.6.0-10+b1_armhf.deb ... Unpacking libsensors5:armhf (1:3.6.0-10+b1) ... Selecting previously unselected package mesa-libgallium:armhf. Preparing to unpack .../148-mesa-libgallium_24.2.8-1_armhf.deb ... Unpacking mesa-libgallium:armhf (24.2.8-1) ... Selecting previously unselected package libvulkan1:armhf. Preparing to unpack .../149-libvulkan1_1.4.304.0-1_armhf.deb ... Unpacking libvulkan1:armhf (1.4.304.0-1) ... Selecting previously unselected package libwayland-server0:armhf. Preparing to unpack .../150-libwayland-server0_1.23.1-1_armhf.deb ... Unpacking libwayland-server0:armhf (1.23.1-1) ... Selecting previously unselected package libgbm1:armhf. Preparing to unpack .../151-libgbm1_24.2.8-1_armhf.deb ... Unpacking libgbm1:armhf (24.2.8-1) ... Selecting previously unselected package libgl1-mesa-dri:armhf. Preparing to unpack .../152-libgl1-mesa-dri_24.2.8-1_armhf.deb ... Unpacking libgl1-mesa-dri:armhf (24.2.8-1) ... Selecting previously unselected package libglx-mesa0:armhf. Preparing to unpack .../153-libglx-mesa0_24.2.8-1_armhf.deb ... Unpacking libglx-mesa0:armhf (24.2.8-1) ... Selecting previously unselected package libglx0:armhf. Preparing to unpack .../154-libglx0_1.7.0-1+b2_armhf.deb ... Unpacking libglx0:armhf (1.7.0-1+b2) ... Selecting previously unselected package libtbbmalloc2:armhf. Preparing to unpack .../155-libtbbmalloc2_2022.0.0-1_armhf.deb ... Unpacking libtbbmalloc2:armhf (2022.0.0-1) ... Selecting previously unselected package libhwloc15:armhf. Preparing to unpack .../156-libhwloc15_2.11.2-1_armhf.deb ... Unpacking libhwloc15:armhf (2.11.2-1) ... Selecting previously unselected package libtbbbind-2-5:armhf. Preparing to unpack .../157-libtbbbind-2-5_2022.0.0-1_armhf.deb ... Unpacking libtbbbind-2-5:armhf (2022.0.0-1) ... Selecting previously unselected package libtbb12:armhf. Preparing to unpack .../158-libtbb12_2022.0.0-1_armhf.deb ... Unpacking libtbb12:armhf (2022.0.0-1) ... Selecting previously unselected package libopencv-core406t64:armhf. Preparing to unpack .../159-libopencv-core406t64_4.6.0+dfsg-14+b4_armhf.deb ... Unpacking libopencv-core406t64:armhf (4.6.0+dfsg-14+b4) ... Selecting previously unselected package libtbb-dev:armhf. Preparing to unpack .../160-libtbb-dev_2022.0.0-1_armhf.deb ... Unpacking libtbb-dev:armhf (2022.0.0-1) ... Selecting previously unselected package libopencv-core-dev:armhf. Preparing to unpack .../161-libopencv-core-dev_4.6.0+dfsg-14+b4_armhf.deb ... Unpacking libopencv-core-dev:armhf (4.6.0+dfsg-14+b4) ... Selecting previously unselected package libpng-dev:armhf. Preparing to unpack .../162-libpng-dev_1.6.44-3_armhf.deb ... Unpacking libpng-dev:armhf (1.6.44-3) ... Selecting previously unselected package libsqlite3-dev:armhf. Preparing to unpack .../163-libsqlite3-dev_3.46.1-1_armhf.deb ... Unpacking libsqlite3-dev:armhf (3.46.1-1) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../164-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1.1) ... Selecting previously unselected package x11proto-dev. Preparing to unpack .../165-x11proto-dev_2024.1-1_all.deb ... Unpacking x11proto-dev (2024.1-1) ... Selecting previously unselected package libxau-dev:armhf. Preparing to unpack .../166-libxau-dev_1%3a1.0.11-1_armhf.deb ... Unpacking libxau-dev:armhf (1:1.0.11-1) ... Selecting previously unselected package libxdmcp-dev:armhf. Preparing to unpack .../167-libxdmcp-dev_1%3a1.1.5-1_armhf.deb ... Unpacking libxdmcp-dev:armhf (1:1.1.5-1) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../168-xtrans-dev_1.4.0-1_all.deb ... Unpacking xtrans-dev (1.4.0-1) ... Selecting previously unselected package libxcb1-dev:armhf. Preparing to unpack .../169-libxcb1-dev_1.17.0-2+b1_armhf.deb ... Unpacking libxcb1-dev:armhf (1.17.0-2+b1) ... Selecting previously unselected package libx11-dev:armhf. Preparing to unpack .../170-libx11-dev_2%3a1.8.10-2_armhf.deb ... Unpacking libx11-dev:armhf (2:1.8.10-2) ... Selecting previously unselected package libpython3.13-minimal:armhf. Preparing to unpack .../171-libpython3.13-minimal_3.13.1-3+b1_armhf.deb ... Unpacking libpython3.13-minimal:armhf (3.13.1-3+b1) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../172-libreadline8t64_8.2-6_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:armhf. Preparing to unpack .../173-libpython3.13-stdlib_3.13.1-3+b1_armhf.deb ... Unpacking libpython3.13-stdlib:armhf (3.13.1-3+b1) ... Selecting previously unselected package libpython3.13:armhf. Preparing to unpack .../174-libpython3.13_3.13.1-3+b1_armhf.deb ... Unpacking libpython3.13:armhf (3.13.1-3+b1) ... Selecting previously unselected package libexpat1-dev:armhf. Preparing to unpack .../175-libexpat1-dev_2.6.4-1_armhf.deb ... Unpacking libexpat1-dev:armhf (2.6.4-1) ... Selecting previously unselected package libpython3.13-dev:armhf. Preparing to unpack .../176-libpython3.13-dev_3.13.1-3+b1_armhf.deb ... Unpacking libpython3.13-dev:armhf (3.13.1-3+b1) ... Selecting previously unselected package libpython3-dev:armhf. Preparing to unpack .../177-libpython3-dev_3.13.1-2_armhf.deb ... Unpacking libpython3-dev:armhf (3.13.1-2) ... Selecting previously unselected package pybind11-dev. Preparing to unpack .../178-pybind11-dev_2.13.6-1_all.deb ... Unpacking pybind11-dev (2.13.6-1) ... Selecting previously unselected package libdlib-dev:armhf. Preparing to unpack .../179-libdlib-dev_19.24.6+dfsg-1_armhf.deb ... Unpacking libdlib-dev:armhf (19.24.6+dfsg-1) ... Selecting previously unselected package libgzstream0:armhf. Preparing to unpack .../180-libgzstream0_1.5+git20171107.9a20658-3_armhf.deb ... Unpacking libgzstream0:armhf (1.5+git20171107.9a20658-3) ... Selecting previously unselected package libgzstream-dev:armhf. Preparing to unpack .../181-libgzstream-dev_1.5+git20171107.9a20658-3_armhf.deb ... Unpacking libgzstream-dev:armhf (1.5+git20171107.9a20658-3) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libtbbmalloc2:armhf (2022.0.0-1) ... Setting up libboost-program-options1.83.0:armhf (1.83.0-4) ... Setting up libxau6:armhf (1:1.0.11-1) ... Setting up libxdmcp6:armhf (1:1.1.5-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libboost1.83-dev:armhf (1.83.0-4) ... Setting up libxcb1:armhf (1.17.0-2+b1) ... Setting up libicu72:armhf (72.1-6) ... Setting up libxcb-xfixes0:armhf (1.17.0-2+b1) ... Setting up libzstd-dev:armhf (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-2) ... Setting up hdf5-helpers (1.14.5+repack-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:armhf (1.7.0-1+b2) ... Setting up libxcb-glx0:armhf (1.17.0-2+b1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libedit2:armhf (3.1-20250104-1) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libboost-program-options1.83-dev:armhf (1.83.0-4) ... Setting up libsensors-config (1:3.6.0-10) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Setting up libxcb-shm0:armhf (1.17.0-2+b1) ... Setting up libcom-err2:armhf (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:armhf (1.1.3-1+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-4) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Feb 3 16:44:33 UTC 2025. Universal Time is now: Mon Feb 3 16:44:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:armhf (1.17.0-2+b1) ... Setting up libpython3.13-minimal:armhf (3.13.1-3+b1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.13.3-1) ... Setting up libblas3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libunbound8:armhf (1.22.0-1+b1) ... Setting up libpkgconf3:armhf (1.8.1-4) ... Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:armhf (2.6.4-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3+b1) ... Setting up libsqlite3-dev:armhf (3.46.1-1) ... Setting up libboost-program-options-dev:armhf (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-3+b1) ... Setting up libxcb-sync1:armhf (1.17.0-2+b1) ... Setting up comerr-dev:armhf (2.1-1.47.2-1) ... Setting up libunistring5:armhf (1.3-1) ... Setting up libssl-dev:armhf (3.4.0-2) ... Setting up libpng16-16t64:armhf (1.6.44-3) ... Setting up libhwloc15:armhf (2.11.2-1) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:armhf (1:3.6.0-10+b1) ... Setting up libk5crypto3:armhf (1.21.3-4) ... Setting up libglapi-mesa:armhf (24.2.8-1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:armhf (14.2.0-12) ... Setting up libvulkan1:armhf (1.4.304.0-1) ... Setting up autoconf (2.72-3) ... Setting up libgzstream0:armhf (1.5+git20171107.9a20658-3) ... Setting up libxcb-dri2-0:armhf (1.17.0-2+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:armhf (3.4.6-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libxshmfence1:armhf (1.3-1+b3) ... Setting up libxcb-randr0:armhf (1.17.0-2+b1) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libtasn1-6:armhf (4.19.0-3+b3) ... Setting up libx11-6:armhf (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.21.3-4) ... Setting up libboost-dev:armhf (1.83.0.2+b2) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libtasn1-6-dev:armhf (4.19.0-3+b3) ... Setting up libdrm-common (2.4.123-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libdlib-data (19.24.6+dfsg-1) ... Setting up libldap2:armhf (2.6.9+dfsg-1) ... Setting up libbrotli-dev:armhf (1.1.0-2+b6) ... Setting up libblas-dev:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.1.3-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up libxcb-dri3-0:armhf (1.17.0-2+b1) ... Setting up libllvm19:armhf (1:19.1.6-1+b1) ... Setting up libwayland-server0:armhf (1.23.1-1) ... Setting up libx11-xcb1:armhf (2:1.8.10-2) ... Setting up liblapack3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.23.1-1) ... Setting up libarpack2t64:armhf (3.9.1-4) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-3) ... Setting up libxau-dev:armhf (1:1.0.11-1) ... Setting up nettle-dev:armhf (3.10-1+b1) ... Setting up libtool (2.5.4-2) ... Setting up libpng-dev:armhf (1.6.44-3) ... Setting up libaec-dev:armhf (1.1.3-1+b1) ... Setting up libjpeg-dev:armhf (1:2.1.5-3+b1) ... Setting up libxext6:armhf (2:1.3.4-1+b3) ... Setting up libidn2-0:armhf (2.3.7-2+b1) ... Setting up libsuperlu7:armhf (7.0.0+dfsg1-2) ... Setting up pkgconf:armhf (1.8.1-4) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b4) ... Setting up libtbbbind-2-5:armhf (2022.0.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libdlib19.2:armhf (19.24.6+dfsg-1) ... Setting up libgzstream-dev:armhf (1.5+git20171107.9a20658-3) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:armhf (1:1.1.5-1) ... Setting up libxfixes3:armhf (1:6.0.0-2+b4) ... Setting up libldap-dev:armhf (2.6.9+dfsg-1) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up liblapack-dev:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libgssapi-krb5-2:armhf (1.21.3-4) ... Setting up libssh2-1-dev:armhf (1.11.1-1) ... Setting up libidn2-dev:armhf (2.3.7-2+b1) ... Setting up libreadline8t64:armhf (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up libdrm2:armhf (2.4.123-1) ... Setting up groff-base (1.23.0-7) ... Setting up libarmadillo14 (1:14.2.1+dfsg-1) ... Setting up libsuperlu-dev:armhf (7.0.0+dfsg1-2) ... Setting up libpython3.13-stdlib:armhf (3.13.1-3+b1) ... Setting up libp11-kit-dev:armhf (0.25.5-3) ... Setting up libdrm-amdgpu1:armhf (2.4.123-1) ... Setting up libpython3.13:armhf (3.13.1-3+b1) ... Setting up libgnutls30t64:armhf (3.8.8-2) ... Setting up libgnutls-openssl27t64:armhf (3.8.8-2) ... Setting up libnghttp2-dev:armhf (1.64.0-1) ... Setting up libarpack2-dev:armhf (3.9.1-4) ... Setting up libxcb1-dev:armhf (1.17.0-2+b1) ... Setting up libdrm-radeon1:armhf (2.4.123-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up libx11-dev:armhf (2:1.8.10-2) ... Setting up libtbb12:armhf (2022.0.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:armhf (3.8.8-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:armhf (1.21.3-4) ... Setting up libpython3.13-dev:armhf (3.13.1-3+b1) ... Setting up libtbb-dev:armhf (2022.0.0-1) ... Setting up libkadm5clnt-mit12:armhf (1.21.3-4) ... Setting up libgnutls28-dev:armhf (3.8.8-2) ... Setting up mesa-libgallium:armhf (24.2.8-1) ... Setting up libpython3-dev:armhf (3.13.1-2) ... Setting up libcurl4t64:armhf (8.11.1-1+b1) ... Setting up libkdb5-10t64:armhf (1.21.3-4) ... Setting up libgbm1:armhf (24.2.8-1) ... Setting up libgl1-mesa-dri:armhf (24.2.8-1) ... Setting up debhelper (13.24.1) ... Setting up pybind11-dev (2.13.6-1) ... Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:armhf (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:armhf (1.21.3-4) ... Setting up libhdf5-fortran-310:armhf (1.14.5+repack-3) ... Setting up krb5-multidev:armhf (1.21.3-4) ... Setting up libhdf5-cpp-310:armhf (1.14.5+repack-3) ... Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... Setting up libglx-mesa0:armhf (24.2.8-1) ... Setting up libglx0:armhf (1.7.0-1+b2) ... Setting up libkrb5-dev:armhf (1.21.3-4) ... Setting up libcurl4-openssl-dev:armhf (8.11.1-1+b1) ... Setting up libopencv-core406t64:armhf (4.6.0+dfsg-14+b4) ... Setting up libhdf5-hl-cpp-310:armhf (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:armhf (1.14.5+repack-3) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libopencv-core-dev:armhf (4.6.0+dfsg-14+b4) ... Setting up libarmadillo-dev (1:14.2.1+dfsg-1) ... Setting up libdlib-dev:armhf (19.24.6+dfsg-1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seer-1.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seer_1.1.4-8_source.changes dpkg-buildpackage: info: source package seer dpkg-buildpackage: info: source version 1.1.4-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make clean make[2]: Entering directory '/build/reproducible-path/seer-1.1.4/src' rm -f *.o ~* seer kmds map_back combineKmers filter_seer make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd test && make clean make[2]: Entering directory '/build/reproducible-path/seer-1.1.4/test' rm -f *.o ~* tests_passed make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4/test' make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_auto_build -- LDFLAGS+=-L/usr/lib/arm-linux-gnueabihf/hdf5/serial make -j3 "INSTALL=install --strip-program=true" LDFLAGS\+=-L/usr/lib/arm-linux-gnueabihf/hdf5/serial make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o sample.o sample.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o significant_kmer.o significant_kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmer.o kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o covar.o covar.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCommon.o seerCommon.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerErr.o seerErr.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerIO.o seerIO.cpp seerCommon.cpp: In function 'arma::vec dlib_to_arma(const column_vector&)': seerCommon.cpp:174:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare] 174 | for (unsigned int i = 0; i < dlib_vec.nr(); ++i) | ~~^~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBasicFilter.o seerBasicFilter.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from seercommon.hpp:15, from seerCommon.cpp:9: /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = arma::arma_sort_index_packet; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = arma::arma_sort_index_packet; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = arma::arma_sort_index_helper_descend]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from 'bool arma::arma_sort_index_helper(Mat&, const Proxy&, uword) [with T1 = Col; bool sort_stable = false]' at /usr/include/armadillo_bits/op_sort_index_meat.hpp:96:16, inlined from 'static bool arma::op_sort_index::apply_noalias(arma::Mat&, const arma::Proxy&, arma::uword) [with T1 = arma::Col]' at /usr/include/armadillo_bits/op_sort_index_meat.hpp:123:42, inlined from 'static void arma::op_sort_index::apply(arma::Mat&, const arma::mtOp&) [with T1 = arma::Col]' at /usr/include/armadillo_bits/op_sort_index_meat.hpp:153:47, inlined from 'arma::Mat& arma::Mat::operator=(const arma::mtOp&) [with T1 = arma::Col; op_type = arma::op_sort_index; eT = unsigned int]' at /usr/include/armadillo_bits/Mat_meat.hpp:5345:17, inlined from 'arma::Col::Col(const arma::Base&) [with T1 = arma::mtOp, arma::op_sort_index>; eT = unsigned int]' at /usr/include/armadillo_bits/Col_meat.hpp:528:21, inlined from 'static bool arma::op_pinv::apply_sym(arma::Mat&, const arma::Mat&, typename arma::get_pod_type::result, arma::uword) [with eT = double]' at /usr/include/armadillo_bits/op_pinv_meat.hpp:203:14: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = arma::arma_sort_index_helper_descend]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from 'bool arma::arma_sort_index_helper(Mat&, const Proxy&, uword) [with T1 = Col; bool sort_stable = false]' at /usr/include/armadillo_bits/op_sort_index_meat.hpp:96:16, inlined from 'static bool arma::op_sort_index::apply_noalias(arma::Mat&, const arma::Proxy&, arma::uword) [with T1 = arma::Col]' at /usr/include/armadillo_bits/op_sort_index_meat.hpp:123:42, inlined from 'static void arma::op_sort_index::apply(arma::Mat&, const arma::mtOp&) [with T1 = arma::Col]' at /usr/include/armadillo_bits/op_sort_index_meat.hpp:153:47, inlined from 'arma::Mat& arma::Mat::operator=(const arma::mtOp&) [with T1 = arma::Col; op_type = arma::op_sort_index; eT = unsigned int]' at /usr/include/armadillo_bits/Mat_meat.hpp:5345:17, inlined from 'arma::Col::Col(const arma::Base&) [with T1 = arma::mtOp, arma::op_sort_index>; eT = unsigned int]' at /usr/include/armadillo_bits/Col_meat.hpp:528:21, inlined from 'static bool arma::op_pinv::apply_sym(arma::Mat&, const arma::Mat&, typename arma::get_pod_type::result, arma::uword) [with eT = double]' at /usr/include/armadillo_bits/op_pinv_meat.hpp:203:14: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerMain.o seerMain.cpp In file included from /usr/include/c++/14/bits/stl_algobase.h:71, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from seercommon.hpp:10, from seerIO.cpp:12: /usr/include/c++/14/bits/predefined_ops.h: In function 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Sample, Sample)]': /usr/include/c++/14/bits/predefined_ops.h:157:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 157 | operator()(_Iterator1 __it1, _Iterator2 __it2) | ^~~~~~~~ /usr/include/c++/14/bits/predefined_ops.h:157:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCmdLine.o seerCmdLine.cpp In file included from /usr/include/c++/14/algorithm:61, from seercommon.hpp:15: /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/14/bits/stl_algo.h:61: /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Sample; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1868:25, inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1884:27: /usr/include/c++/14/bits/stl_algo.h:1593:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1593 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1855:34, inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1889:38: /usr/include/c++/14/bits/stl_algo.h:88:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 88 | if (__comp(__a, __b)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:90:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 90 | if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:92:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 92 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:97:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 97 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:99:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 99 | else if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Sample, Sample)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from 'void readPheno(const std::string&, std::vector&, std::unordered_map, int>&)' at seerIO.cpp:41:13: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Sample, Sample)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from 'void readPheno(const std::string&, std::vector&, std::unordered_map, int>&)' at seerIO.cpp:41:13: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerStats.o seerStats.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerContinuousAssoc.o seerContinuousAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBinaryAssoc.o seerBinaryAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o logitFunction.o logitFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o linearFunction.o linearFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsMain.o kmdsMain.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsStruct.o kmdsStruct.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsCmdLine.o kmdsCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o fasta.o fasta.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapMain.o mapMain.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapCmdLine.o mapCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineInit.o combineInit.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineCmdLine.o combineCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineKmers.o combineKmers.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filter_seer.o filter_seer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filterCmdLine.o filterCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o seerMain.o seerCmdLine.o seerStats.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o seer g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o kmds In file included from /usr/include/c++/14/list:65, from filter_seer.hpp:11, from filter_seer.cpp:7: /usr/include/c++/14/bits/stl_list.h: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_insert(iterator, _Args&& ...) [with _Args = {const Significant_kmer&}; _Tp = Significant_kmer; _Alloc = std::allocator]': /usr/include/c++/14/bits/stl_list.h:2002:8: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 2002 | _M_insert(iterator __position, _Args&&... __args) | ^~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o map_back In member function 'void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Significant_kmer; _Alloc = std::allocator]', inlined from 'int main(int, char**)' at filter_seer.cpp:96:43: /usr/include/c++/14/bits/stl_list.h:1306:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 1306 | { this->_M_insert(end(), __x); } | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial combineInit.o combineCmdLine.o combineKmers.o -lgzstream -lz -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o combineKmers g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o filter_seer make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' if dh_auto_test ; then echo Test passed ; else echo '****************************** TEST FAILED. Please contact upstream *******************************' ; fi make -j3 test make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd test && make test make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/test' ./run_test.pl && touch tests_passed PASSED test 1, basic filters PASSED test 2, binary phenotype assocation PASSED test 3, print output PASSED test 4, continuous phenotype assocation PASSED test 5, assocation with population structure PASSED test 6, assocation with covariates PASSED test 7, filter output PASSED test 8, map k-mers make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/test' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' Test passed make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_auto_install -- PREFIX=/build/reproducible-path/seer-1.1.4/debian/seer/usr make -j3 install DESTDIR=/build/reproducible-path/seer-1.1.4/debian/seer AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/build/reproducible-path/seer-1.1.4/debian/seer/usr make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd src && make install make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' install -d /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin install seer kmds map_back combineKmers filter_seer /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' for pl in scripts/*.pl ; do \ plbase=`basename ${pl} .pl` ; \ sed "s+Usage: ./${plbase}.pl+Usage: ${plbase}+" ${pl} > /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin/${plbase} ; \ done # Fix broken usage hint: sed -i "s+Usage: ./hits_to_matrix.pl+Usage: reformat_output+" /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin/reformat_output make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_fixperms find debian -name Makefile -exec chmod -x \{\} \; find debian -name "*.fa" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/seer/usr/bin/seer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/seer/usr/bin/combineKmers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/seer/usr/bin/map_back contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/seer/usr/bin/filter_seer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/seer/usr/bin/kmds contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seer' in '../seer_1.1.4-8_armhf.deb'. dpkg-deb: building package 'seer-dbgsym' in '../seer-dbgsym_1.1.4-8_armhf.deb'. dpkg-genbuildinfo --build=binary -O../seer_1.1.4-8_armhf.buildinfo dpkg-genchanges --build=binary -O../seer_1.1.4-8_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5806 and its subdirectories I: Current time: Mon Feb 3 04:49:43 -12 2025 I: pbuilder-time-stamp: 1738601383 Mon Feb 3 16:50:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Mon Feb 3 16:50:13 UTC 2025 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Mon Feb 3 17:00:38 UTC 2025 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Mon Feb 3 17:00:41 UTC 2025 I: seer_1.1.4-8_armhf.changes: Format: 1.8 Date: Fri, 26 Jul 2024 09:57:43 +0200 Source: seer Binary: seer seer-dbgsym Architecture: armhf Version: 1.1.4-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: seer - genomic sequence element (kmer) enrichment analysis Closes: 1074123 Changes: seer (1.1.4-8) unstable; urgency=medium . * Team upload * Building with --std=c++14 to comply with newest dlib (Closes: #1074123) Checksums-Sha1: c4936da7639beed7b08044fb48e2db2a33dc7fd1 8921960 seer-dbgsym_1.1.4-8_armhf.deb 6b03d1588fb45cb9aad2892db271fb916e03435e 9763 seer_1.1.4-8_armhf.buildinfo 0916c664b4a32bbd15873847d6d45d5c3c03cef6 1143980 seer_1.1.4-8_armhf.deb Checksums-Sha256: e5f066c965ba9ed8d4acd93d89342c326f1f1ed6af21575e72c664029e1c76de 8921960 seer-dbgsym_1.1.4-8_armhf.deb c9b4dd7bb4c30590341169e02a26b55d74a5937d2ec5f0b8f849348cf50915a3 9763 seer_1.1.4-8_armhf.buildinfo d938ed1ba14b02b684318610939019d03dfcab87da1d91bfd0b1f0f7e605718f 1143980 seer_1.1.4-8_armhf.deb Files: 4b7bef5252db2acd07f882e210da0d4e 8921960 debug optional seer-dbgsym_1.1.4-8_armhf.deb 5d57beecc0472331d057e0785b03ee4a 9763 science optional seer_1.1.4-8_armhf.buildinfo 7aebe91c06f1bd13acb4bbc173a80fdb 1143980 science optional seer_1.1.4-8_armhf.deb Mon Feb 3 17:00:42 UTC 2025 I: diffoscope 287 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_17-13961.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VrmqopeF/seer_1.1.4-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VrmqopeF/seer_1.1.4-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VrmqopeF/seer_1.1.4-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VrmqopeF/b1/seer_1.1.4-8_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.VrmqopeF/b2/seer_1.1.4-8_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 268ms CPU time consumed: 268ms Mon Feb 3 17:00:42 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists. Mon Feb 3 17:00:42 UTC 2025 I: seer from trixie built successfully and reproducibly on armhf. Mon Feb 3 17:00:44 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Feb 3 17:00:44 UTC 2025 I: Submitting 12K b1/seer_1.1.4-8_armhf.buildinfo.asc Mon Feb 3 17:00:45 UTC 2025 I: Submitting 12K b2/seer_1.1.4-8_armhf.buildinfo.asc Mon Feb 3 17:00:46 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Feb 3 17:00:46 UTC 2025 I: Done submitting .buildinfo files. Mon Feb 3 17:00:46 UTC 2025 I: Removing signed seer_1.1.4-8_armhf.buildinfo.asc files: removed './b1/seer_1.1.4-8_armhf.buildinfo.asc' removed './b2/seer_1.1.4-8_armhf.buildinfo.asc'