Mon Oct 7 15:54:35 UTC 2024 I: starting to build seqan-raptor/trixie/armhf on jenkins on '2024-10-07 15:54' Mon Oct 7 15:54:35 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_29/12127/console.log Mon Oct 7 15:54:35 UTC 2024 I: Downloading source for trixie/seqan-raptor=3.0.1+ds-5 --2024-10-07 15:54:36-- http://deb.debian.org/debian/pool/main/s/seqan-raptor/seqan-raptor_3.0.1%2bds-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2642 (2.6K) [text/prs.lines.tag] Saving to: ‘seqan-raptor_3.0.1+ds-5.dsc’ 0K .. 100% 314M=0s 2024-10-07 15:54:36 (314 MB/s) - ‘seqan-raptor_3.0.1+ds-5.dsc’ saved [2642/2642] Mon Oct 7 15:54:36 UTC 2024 I: seqan-raptor_3.0.1+ds-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-raptor Binary: seqan-raptor, seqan-raptor-doc Architecture: any all Version: 3.0.1+ds-5 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/raptor Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/seqan-raptor Vcs-Git: https://salsa.debian.org/med-team/seqan-raptor.git Testsuite: autopkgtest Testsuite-Triggers: cmake, cwltool, g++, libgtest-dev, libseqan3-dev, libsimde-dev, libxxhash-dev, libyaml-cpp-dev, nodejs, patch, pkg-config, python3-setuptools Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen , cppreference-doc-en-html , texlive-font-utils , texlive-latex-base , texlive-latex-recommended , texlive-latex-extra , texlive-plain-generic , texlive-fonts-recommended , ghostscript Package-List: seqan-raptor deb science optional arch=any seqan-raptor-doc deb doc optional arch=all profile=!nodoc Checksums-Sha1: a298b4c8b0b5ab15c49315e97dee322b95069357 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz 7ef2860a79f904e93fc00eac3cc6857fb6854b91 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz Checksums-Sha256: 3fb5f987f3c0e678d5de41ab3f9f66eae37ba5993edb294caa9e8f2c6132a55d 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz f841e6322018fe1148e249c14bd6807ea1354c220c7d3be298785372d0a7c5c2 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz Files: 650d23e7c16c308dcc95dbc6d302df1f 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz f64b145c2eb3faeda15aab4b80c083bd 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmT4eQ8ACgkQPCZ2P2xn 5uJmwxAAlivqo6IGLyaO8L23pZwtsq6NL64C9CwA6nSYsjK0igFujGGjpClmFTP5 FB0p01w494ZZJ5WezVDvIvPP7ghV2r2+hyewuvL0RQJI7OOvF9c9mosI6Ta+szpw meT5tVXZ95LAxXQJg1MIY0Y7OJ6T5JJP2jZLS2+T/S7Ye6FiLTNWDTGhbXo5pyry usNTXNCo/mYs/Yr6tbZC+oPXSOFco09Uz6K6q+6wFLLeCZBfMGUMQG8qUMnQW1Gv 1ATXRWsvjOoeiRh8r/tq3dnWO7C3F86njvO4y6S6O1mTVFRsc0ep9uKcIoviG4So MsX1yKFlsYo0QUPPohtKWnC3ZzNZ6FPrVSMJ+4ItyLGahEgQbty/ePW08HqQjJak LMXtlF4wtuL2szIQr5uxGnDw6pheuByzmRwAVrsiVuIvT2NZZqyz4pzWSD04wfb0 /0mF5jqjW9+GBwutu7/WKYVN7WjPh4NSwDdHauVHDEQmYkVldsrNEWv7ALpwvmiB gu0vWFyumY3kEjto/kZ1YjCroqnO/8/lPzn9dYnS8UIhX0yQmLdnq374QLiH9QCm 9E3j73ucD19l38AI9QuRLpPZue7ziqZ233iSjRhguxkK75om5th9YIxGPUJlxtZO d9h5YKKa/2vEYLz37i8RARxfNaQ00TcPBEZ0qxgDYp4d1CxA89k= =Ijhw -----END PGP SIGNATURE----- Mon Oct 7 15:54:36 UTC 2024 I: Checking whether the package is not for us Mon Oct 7 15:54:36 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Mon Oct 7 15:54:36 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Mon Oct 7 16:05:22 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 7 03:54:43 -12 2024 I: pbuilder-time-stamp: 1728316483 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-raptor_3.0.1+ds-5.dsc] I: copying [./seqan-raptor_3.0.1+ds.orig.tar.xz] I: copying [./seqan-raptor_3.0.1+ds-5.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 6 13:05:19 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-5.dsc: no acceptable signature found dpkg-source: info: extracting seqan-raptor in seqan-raptor-3.0.1+ds dpkg-source: info: unpacking seqan-raptor_3.0.1+ds.orig.tar.xz dpkg-source: info: unpacking seqan-raptor_3.0.1+ds-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy dpkg-source: info: applying chopper_no_test dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying debian_xxhash dpkg-source: info: applying debian_cppreference dpkg-source: info: applying doxygen_update I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25652/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='46ae7406883c4e978addb2b7245c49f4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25652' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ae270kJF/pbuilderrc_SGVT --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ae270kJF/b1 --logfile b1/build.log seqan-raptor_3.0.1+ds-5.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25652/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen, cppreference-doc-en-html, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.3.0~rc.1); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libyaml-cpp-dev; however: Package libyaml-cpp-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on cppreference-doc-en-html; however: Package cppreference-doc-en-html is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cppreference-doc-en-html{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} googletest{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libcereal-dev{a} libclang-cpp16t64{a} libclang1-16t64{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libgtest-dev{a} libharfbuzz0b{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm16t64{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libnsl2{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libssh2-1t64{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libxxhash-dev{a} libyaml-cpp-dev{a} libyaml-cpp0.8{a} libz3-4{a} libzzip-0-13t64{a} lynx{a} lynx-common{a} m4{a} man-db{a} media-types{a} netbase{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates dbus default-jre dvisvgm fonts-droid-fallback krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lmodern mailcap ps2eps psmisc publicsuffix ruby shared-mime-info tex-gyre tipa tk x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 177 newly installed, 0 to remove and 0 not upgraded. Need to get 247 MB of archives. After unpacking 1046 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf poppler-data all 0.4.12-1 [1601 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.6-1 [800 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.6-1 [1812 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 13 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b2 [34.9 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.6-1 [1817 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.6-1 [669 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-6 [864 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-8 [88.8 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.30.4-1 [2223 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1 [305 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3 [163 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.63.0-1 [62.9 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-7 [199 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.10.1-1 [303 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-2 [70.0 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.4-3 [143 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-6 [134 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.30.4-1+b1 [5368 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf lynx-common all 2.9.2-1 [1193 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf lynx armhf 2.9.2-1 [570 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf cppreference-doc-en-html all 20170409-2 [3593 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 70 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20240808-1 [77.9 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libllvm16t64 armhf 1:16.0.6-27+b1 [20.6 MB] Get: 79 http://deb.debian.org/debian trixie/main armhf libclang-cpp16t64 armhf 1:16.0.6-27+b1 [9877 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libclang1-16t64 armhf 1:16.0.6-27+b1 [5543 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libfmt9 armhf 9.1.0+ds1-2 [105 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf doxygen armhf 1.9.8+ds-2+b1 [4461 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libfontenc1 armhf 1:1.1.8-1 [20.6 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf xfonts-utils armhf 1:7.7+7 [84.2 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 90 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf fonts-lmodern all 2.005-1 [4540 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libgs-common all 10.04.0~dfsg-1 [148 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libgs10-common all 10.04.0~dfsg-1 [474 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libavahi-common-data armhf 0.8-13+b2 [112 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libavahi-common3 armhf 0.8-13+b2 [40.2 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libdbus-1-3 armhf 1.14.10-4+b1 [181 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libavahi-client3 armhf 0.8-13+b2 [43.4 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libcups2t64 armhf 2.4.10-2 [216 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libidn12 armhf 1.42-2 [77.7 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libijs-0.35 armhf 0.35-15.1+b1 [13.4 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libjbig2dec0 armhf 0.20-1+b2 [56.1 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf liblcms2-2 armhf 2.14-2+b1 [126 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libopenjp2-7 armhf 2.5.0-2+b3 [170 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libpaper1 armhf 1.1.29+b1 [12.2 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.21-1 [36.3 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2 [140 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libice6 armhf 2:1.0.10-1+b1 [50.1 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libsm6 armhf 2:1.2.3-1+b1 [31.7 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libxt6t64 armhf 1:1.2.1-1.2 [159 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libgs10 armhf 10.04.0~dfsg-1 [2185 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf ghostscript armhf 10.04.0~dfsg-1 [50.1 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf googletest all 1.15.2-1 [514 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libapache-pom-java all 29-2 [5276 B] Get: 125 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.2-2 [443 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libcereal-dev armhf 1.3.2+dfsg-5 [221 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf libcommons-parent-java all 56-1 [10.8 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf libfontbox-java all 1:1.8.16-5 [211 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.82.1-1 [1325 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf libgtest-dev armhf 1.15.2-1 [246 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 9.0.0-1 [417 kB] Get: 141 http://deb.debian.org/debian trixie/main armhf libkpathsea6 armhf 2024.20240313.70630+ds-4 [147 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf libmpfi0 armhf 1.5.4+ds-3 [28.6 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf libpaper-utils armhf 1.1.29+b1 [8700 B] Get: 144 http://deb.debian.org/debian trixie/main armhf libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-3 [31.7 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf libpotrace0 armhf 1.16-2+b1 [22.6 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf libptexenc1 armhf 2024.20240313.70630+ds-4 [44.3 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf libseqan3-dev all 3.3.0+ds-2 [758 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf libsimde-dev all 0.8.2-1 [465 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf libsynctex2 armhf 2024.20240313.70630+ds-4 [49.2 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf libteckit0 armhf 2.5.12+ds1-1 [259 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf libtexlua53-5 armhf 2024.20240313.70630+ds-4 [82.7 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf libxmu6 armhf 2:1.1.3-3+b2 [50.9 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf libxpm4 armhf 1:3.5.17-1+b1 [50.0 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf libxaw7 armhf 2:1.0.14-1+b2 [165 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf libxi6 armhf 2:1.8.2-1 [73.6 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf libxxhash-dev armhf 0.8.2-2+b1 [90.3 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf libyaml-cpp0.8 armhf 0.8.0+dfsg-6+b1 [112 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf libyaml-cpp-dev armhf 0.8.0+dfsg-6+b1 [161 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf libzzip-0-13t64 armhf 0.13.72+dfsg.1-1.2+b1 [53.0 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-3 [29.1 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-3 [26.1 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf pkg-config armhf 1.8.1-3 [13.9 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf tex-common all 6.18 [32.5 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf preview-latex-style all 13.2-1 [350 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf texlive-binaries armhf 2024.20240313.70630+ds-4 [6043 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf texlive-base all 2024.20240829-2 [22.7 MB] Get: 171 http://deb.debian.org/debian trixie/main armhf texlive-font-utils all 2024.20240829-1 [6982 kB] Get: 172 http://deb.debian.org/debian trixie/main armhf texlive-fonts-recommended all 2024.20240829-2 [4990 kB] Get: 173 http://deb.debian.org/debian trixie/main armhf texlive-latex-base all 2024.20240829-2 [1273 kB] Get: 174 http://deb.debian.org/debian trixie/main armhf texlive-latex-recommended all 2024.20240829-2 [8845 kB] Get: 175 http://deb.debian.org/debian trixie/main armhf texlive-pictures all 2024.20240829-2 [17.0 MB] Get: 176 http://deb.debian.org/debian trixie/main armhf texlive-latex-extra all 2024.20240829-1 [20.9 MB] Get: 177 http://deb.debian.org/debian trixie/main armhf texlive-plain-generic all 2024.20240829-1 [28.6 MB] Fetched 247 MB in 3s (87.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package poppler-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.6-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.6-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.3-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_armhf.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:armhf (3.12.6-1) ... Setting up libexpat1:armhf (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20362 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-3_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_armhf.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... 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Setting up libpaper1:armhf (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up libxi6:armhf (2:1.8.2-1) ... Setting up libcurl4t64:armhf (8.10.1-1) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libseqan3-dev (3.3.0+ds-2) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libclang1-16t64 (1:16.0.6-27+b1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp16t64 (1:16.0.6-27+b1) ... Setting up libcairo2:armhf (1.18.2-2) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up doxygen (1.9.8+ds-2+b1) ... Setting up libxt6t64:armhf (1:1.2.1-1.2) ... Setting up libnsl2:armhf (1.3.0-3+b2) ... Setting up cmake (3.30.4-1+b1) ... Setting up libcups2t64:armhf (2.4.10-2) ... Setting up libxmu6:armhf (2:1.1.3-3+b2) ... Setting up libpython3.12-stdlib:armhf (3.12.6-1) ... Setting up preview-latex-style (13.2-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libxaw7:armhf (2:1.0.14-1+b2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up texlive-binaries (2024.20240313.70630+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2024.20240829-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libpython3-stdlib:armhf (3.12.6-1) ... Setting up libgs10-common (10.04.0~dfsg-1) ... Setting up texlive-plain-generic (2024.20240829-1) ... Setting up python3 (3.12.6-1) ... Setting up texlive-font-utils (2024.20240829-1) ... Setting up texlive-latex-base (2024.20240829-2) ... Setting up texlive-latex-recommended (2024.20240829-2) ... Setting up texlive-pictures (2024.20240829-2) ... Setting up texlive-fonts-recommended (2024.20240829-2) ... Setting up libgs10:armhf (10.04.0~dfsg-1) ... Setting up texlive-latex-extra (2024.20240829-1) ... Setting up ghostscript (10.04.0~dfsg-1) ... Processing triggers for libc-bin (2.40-2) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan-raptor-3.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-raptor_3.0.1+ds-5_source.changes dpkg-buildpackage: info: source package seqan-raptor dpkg-buildpackage: info: source version 3.0.1+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_clean dh_auto_clean --sourcedirectory=test/unit --builddirectory build_unit #dh_auto_clean --sourcedirectory=test/performance --builddirectory build_performance #dh_auto_clean --sourcedirectory=test/header --builddirectory build_header dh_auto_clean --sourcedirectory=test/snippet --builddirectory build_snippet make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_clean-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_clean --indep --builddir doc_build make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_configure -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF .. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning (dev) at build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Detected as running from a repository checkout… -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 CMake Warning (dev) at lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): build_system/raptor-config.cmake:227 (find_package) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: disabled -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3.1 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Finding program ccache -- Finding program ccache - Failed CMake Warning (dev) at /usr/share/cmake/seqan3/seqan3-config-version.cmake:87 (message): SeqAn3 does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): lib/chopper/CMakeLists.txt:60 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): lib/chopper/CMakeLists.txt:89 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Configuring done (14.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf dh_auto_configure --sourcedirectory=test/unit --builddirectory build_unit -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF cd build_unit && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/unit -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning (dev) at /build/reproducible-path/seqan-raptor-3.0.1+ds/build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/test/raptor-test.cmake:15 (find_package) CMakeLists.txt:12 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Detected as running from a repository checkout… -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 CMake Warning (dev) at /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/build_system/raptor-config.cmake:227 (find_package) /build/reproducible-path/seqan-raptor-3.0.1+ds/test/raptor-test.cmake:15 (find_package) CMakeLists.txt:12 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: disabled -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3.1 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /build/reproducible-path/seqan-raptor-3.0.1+ds/include CMake Warning (dev) at /build/reproducible-path/seqan-raptor-3.0.1+ds/build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/test/raptor-test.cmake:16 (include) CMakeLists.txt:12 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding program ccache -- Finding program ccache - Failed CMake Warning (dev) at /usr/share/cmake/seqan3/seqan3-config-version.cmake:87 (message): SeqAn3 does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/CMakeLists.txt:60 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/CMakeLists.txt:89 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Test dependency: Google Test 1.15.0 found. -- Configuring done (13.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit #dh_auto_configure --sourcedirectory=test/performance --builddirectory build_performance -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF #dh_auto_configure --sourcedirectory=test/header --builddirectory build_header -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF dh_auto_configure --sourcedirectory=test/snippet --builddirectory build_snippet -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF cd build_snippet && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/snippet -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning (dev) at /build/reproducible-path/seqan-raptor-3.0.1+ds/build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/test/raptor-test.cmake:15 (find_package) CMakeLists.txt:11 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Detected as running from a repository checkout… -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 CMake Warning (dev) at /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/build_system/raptor-config.cmake:227 (find_package) /build/reproducible-path/seqan-raptor-3.0.1+ds/test/raptor-test.cmake:15 (find_package) CMakeLists.txt:11 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: disabled -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3.1 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /build/reproducible-path/seqan-raptor-3.0.1+ds/include CMake Warning (dev) at /build/reproducible-path/seqan-raptor-3.0.1+ds/build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/test/raptor-test.cmake:16 (include) CMakeLists.txt:11 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding program ccache -- Finding program ccache - Failed CMake Warning (dev) at /usr/share/cmake/seqan3/seqan3-config-version.cmake:87 (message): SeqAn3 does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/CMakeLists.txt:60 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/CMakeLists.txt:89 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Test dependency: Google Test 1.15.0 found. -- Configuring done (14.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_configure --sourcedirectory=test/documentation --builddirectory doc_build -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON cd doc_build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON ../test/documentation -- Searching for doxygen. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen missing components: dot -- Could not find dot tool. Disabling dot support. -- Configuring doc. -- Add doc test. -- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED RAPTOR_NATIVE_BUILD RAPTOR_STRIP_BINARY RAPTOR_SUBMODULES_DIR build_search -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_build --arch cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds -B/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/_deps/raptor_chopper_project-build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' [ 3%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o [ 3%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o [ 3%] Built target xxhash_project cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' [ 5%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp [ 7%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp:15: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ 112 | class alphabet_tuple_base : | ^~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here 59 | class cigar : public alphabet_tuple_base | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ 59 | class alphabet_proxy : | ^~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ 672 | class alphabet_tuple_base::component_proxy : | ^~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ 357 | return component_proxy{val, l}; | ^ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here 177 | get<0>(*this) = 0; | ~~~~~~^~~~~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/validators.hpp:17, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp:14: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ 112 | class alphabet_tuple_base : | ^~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here 59 | class cigar : public alphabet_tuple_base | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ 59 | class alphabet_proxy : | ^~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ 672 | class alphabet_tuple_base::component_proxy : | ^~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ 357 | return component_proxy{val, l}; | ^ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here 177 | get<0>(*this) = 0; | ~~~~~~^~~~~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ make[4]: *** [src/prepare/CMakeFiles/raptor_prepare.dir/build.make:79: src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o] Error 1 make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:551: src/prepare/CMakeFiles/raptor_prepare.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 9%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/validators.hpp:17, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp:23: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ 112 | class alphabet_tuple_base : | ^~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here 59 | class cigar : public alphabet_tuple_base | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ 59 | class alphabet_proxy : | ^~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ 672 | class alphabet_tuple_base::component_proxy : | ^~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ 357 | return component_proxy{val, l}; | ^ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here 177 | get<0>(*this) = 0; | ~~~~~~^~~~~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_helper.hpp:21, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector.hpp:24, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp:16, from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/hierarchical_interleaved_bloom_filter.hpp:17, from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/index.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade/index_upgrader.hpp:16, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp:16: /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/uint128_t.hpp:19:56: error: unable to emulate ‘TI’ 19 | typedef unsigned int uint128_t __attribute__((mode(TI))); | ^ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/dna4_traits.hpp:15, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp:19: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ 112 | class alphabet_tuple_base : | ^~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here 59 | class cigar : public alphabet_tuple_base | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ 59 | class alphabet_proxy : | ^~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ 672 | class alphabet_tuple_base::component_proxy : | ^~~~~~~~~~~~~~~ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ 357 | return component_proxy{val, l}; | ^ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here 177 | get<0>(*this) = 0; | ~~~~~~^~~~~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ make[4]: *** [src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make:107: src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: *** [src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make:79: src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o] Error 1 make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:603: src/upgrade/CMakeFiles/raptor_upgrade.dir/all] Error 2 make[4]: *** [src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make:93: src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o] Error 1 make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:420: src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/all] Error 2 make[3]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' make[2]: *** [Makefile:139: all] Error 2 make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-arm-linux-gnueabihf' dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:30: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' make: *** [debian/rules:13: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25652 and its subdirectories Mon Oct 7 16:05:25 UTC 2024 W: No second build log, what happened?